lrit3b (LOC106600744)


Basic Information

Item Value
gene id lrit3b
gene name LOC106600744
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 38935354 ~ 38939611 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953845.1
AAGTGACTATCAAGCAGTATGTAACTTTTCAAGTGGTAAGTGTGTGGAAATGAAACTGAATAATATATAGTAACCAAACTAATACAGGACTATGCAAGAAAATACACATTTGCACGACAGAATAAAAACCATGACAAGTGTTGTGTATCAATTAAATATCACAAAACATAGCTATTTATTTAAAATACCATAAAATCTAACTACTGGAAATAAGGGTTTTTCCAATAATCAGCAATGGATTACATGTCAGGCCAACCAACTGGCATTGTTTTAGGTAGGGTACTTGACCTCTGATTTTGTGATTTAGCAGTATGCTATATAGTGAAGCACAGGATTAAGAAGAAGACCTAGTAACCTGCGTAATCCCAACTAATCTGCCTCTGCTTCTTTCCACTTGACGTTAATGTAGGAGAATTTGGGAGCGGCAAACTGGGAATGTCAGCTAAAGAGAGGAATGTGGAGCTAAACAGAGGTTTTGCTTACTCTGACCTTGCTTGGTGAATAATGTATCGACTTCTCTTGGTTCAGATGCTACATTGTTGTTTCCTGGTGGCCCATTCCTGCCCTACTCTGTGTACTTGTGTTTACCTAGGAGGGAGCAATGGGACAGGTCTCAGGTCTGTTTTGTGCAGCGAACCCCGCATGTCGGCCATCCCCCTCAATGCTCCAGCCGACACAGTCAAGTTTCGTCTGGAGAAAACCTCTATCTCCAGAGTGCCCAGGGCAGCCTTCTTCTACCTGTCTGAGCTCCAGTTCCTGTGGTTGACCTACAACTCCATCACCACCATCCACCCCAGCAGCTTCCTTAACTTGAAGGCGTTGCGTGAGCTGCGATTGGACGGGAaccttctctctgccttcccctgGGAGGGGCTTAGGGACATGCCGCGGCTGCGCACACTGGGTCTGCACAATAACCGCCTCTCCAGCCTCCCTGCCCACGCTGCCCTCTTTCTTCCCAACGTCACCTACCTAGATCTGTCCAGCAACAGACTGACCACTCTGCCCTCAGAGCTGTTGGACCTTTGGTTCCCTCCCCCTGCCCAACTAACAGGCCCAACACAGAGAAGAGTGCTAGGTGTCCATGACAACATGTGGCAGTGTGACTGCCAAATCTCTATGCTGCTGGCCCAGTCTAAGTACCAGGAGAGCCCTGTAGTTCTGATGGACCAGCTCCTGACCTGTAGCCGTAGCGGGGGAACCGCCGACCAGCTGGGGGCCCCCCTCACAGAGGCTGACTTGTCGCGGTGCCAGAGGCCCTCTGTCCAGCCTTCAGCCACCCGGGTTACCTCCCCGCTGGGCAGCAACGTGATGCTCCGCTGTGATGCCACAGGCTACCCCACGCCAGTGCTCACCTGGACCAAAGCAGCAGGAGCCTCCATATACAACACAGAGTGCTGTCAACAACCGTACAGCAAATCTGACCCTGAAAAACTACCCATTAACTTGGACAGCTTTATTCAGGAATCTCCGCGTGTGGGAATCCGATGGTCCATCATCAACCTAAATGGACTTTCGTACAAGGATGCAGGAGAATATCGGTGCCAGGCACGGAACATGGCAGGAACAGCAGAAGCCCCCATTAGACTtagggtggtgggggtggtgccCCCTTCCATAAAGAGCAAGACCCGCAAAGCCCCTTCTAGATCCTCAACCAGCAACAGAAAACCTCTCCCACAAAAGCCGAAACGGGCACAGAATATTACTTCAATCTCCACCTCAAAAAAGAAGACTCTTCTGAACCTCAAGTATGTTACACCCCCCACTCCAACGAACAAGACCCAGAGTATCAAAATGGCCCCGGTCCCCACCCCCCTGAAAAAAATGTAATCGTCCTCAAAAAAGTCAAACAGAAAACCTCAGATATCTGTCAATATTATACCCACCTCACCAGAAaacactaccactacatcatCTTCACCAGAAAACAACAAGGACCAGATGTAGTGGCCCTTTCATCTATTACTATAACAACCCTTCTTATTCTATGCCTTTCTGTTGGTCAATATTTTAAAGAGCTCATACATGACCCTTTAAAAACAGAGTGATCAGTGGCCAACAGAGGGCGTCCAGAGCCCAGAGACATGAATAGCAAACTATTACTCAAACTATTACTGTTACTCTGTTTAAGTGACAACAATTACCATTGAGGATCTGATGTATTCTTTTTccagatttgttttattttgttttactgTTTTTAGAGAGGTAACGCTTATCACCCTCTTATCTGTGTAAGATCTGTACTTGTGCTAAAGATTACGAGGACATATTCCTACAAGGACATATTCTTACTAGGAGCTCAGCTATAAAGGGTAATTCCGCCACTTCATATTCATTCTCTCCTCcaccataccagtgtctacatgaaaatggtgcATTTCTATGATCTCTGGTAAAGAGCAGAAAGGTCCTCAAATGCTTCTCAATGAAATAACAGTGCATGATGAAAGTAAAAGTAAGATATTTTTTTAATCATGGCTGAATTACCGACCGGGCATGAAGGCCACgtgcccccattgattttgttagccaCTCTCACACAGATATAATtctaacatggcataagtcatggcaaaatgtgtagaatttcaggaaattagctttaaaacaaaGGAAAAAAAATCTTTACTCCATGGCAAAATCTGTCGAATTGTAGGAAATGTGCTGTAACACTAACAATTTTCCTCTTCAtctcatggcaaaatgagtaggtAGCCTAAAGGCagatagcctagcagttaagagtgttTGGCCATGAACcagaaggcagttaacccccatcaacaactgctccctgggtGCCATGGACGTTAAATAAGGCAGCCCACTGCACCtctaattcagaggggttgggttaaatgcagaaagcacatttcggttgaatgcattcacttGTGCAATTGACTAGGTTTCCTAATTCCCTGAAATtagttatacatttgcaaaatgtgtCCAATTTGCCATAAACGTGCTTTAAAGTTGCACAATTTTCTCTGTGCctatggtaaaatgtgtagaattgcaggaaatttactTTAAAACTAAAATAAATTATTCGCGGTCAAGAAagggggccactaaaatg
>XM_036953846.1
tatatatatcatatatacatatatacatatatactgtatatatgatatatatatatatatatatttttactgtgGCTCCACTATTTAGTACATTTAAGTGACTATCAAGCAGTATGTAACTTTTCAAGTGATGCTACATTGTTGTTTCCTGGTGGCCCATTCCTGCCCTACTCTGTGTACTTGTGTTTACCTAGGAGGGAGCAATGGGACAGGTCTCAGGTCTGTTTTGTGCAGCGAACCCCGCATGTCGGCCATCCCCCTCAATGCTCCAGCCGACACAGTCAAGTTTCGTCTGGAGAAAACCTCTATCTCCAGAGTGCCCAGGGCAGCCTTCTTCTACCTGTCTGAGCTCCAGTTCCTGTGGTTGACCTACAACTCCATCACCACCATCCACCCCAGCAGCTTCCTTAACTTGAAGGCGTTGCGTGAGCTGCGATTGGACGGGAaccttctctctgccttcccctgGGAGGGGCTTAGGGACATGCCGCGGCTGCGCACACTGGGTCTGCACAATAACCGCCTCTCCAGCCTCCCTGCCCACGCTGCCCTCTTTCTTCCCAACGTCACCTACCTAGATCTGTCCAGCAACAGACTGACCACTCTGCCCTCAGAGCTGTTGGACCTTTGGTTCCCTCCCCCTGCCCAACTAACAGGCCCAACACAGAGAAGAGTGCTAGGTGTCCATGACAACATGTGGCAGTGTGACTGCCAAATCTCTATGCTGCTGGCCCAGTCTAAGTACCAGGAGAGCCCTGTAGTTCTGATGGACCAGCTCCTGACCTGTAGCCGTAGCGGGGGAACCGCCGACCAGCTGGGGGCCCCCCTCACAGAGGCTGACTTGTCGCGGTGCCAGAGGCCCTCTGTCCAGCCTTCAGCCACCCGGGTTACCTCCCCGCTGGGCAGCAACGTGATGCTCCGCTGTGATGCCACAGGCTACCCCACGCCAGTGCTCACCTGGACCAAAGCAGCAGGAGCCTCCATATACAACACAGAGTGCTGTCAACAACCGTACAGCAAATCTGACCCTGAAAAACTACCCATTAACTTGGACAGCTTTATTCAGGAATCTCCGCGTGTGGGAATCCGATGGTCCATCATCAACCTAAATGGACTTTCGTACAAGGATGCAGGAGAATATCGGTGCCAGGCACGGAACATGGCAGGAACAGCAGAAGCCCCCATTAGACTtagggtggtgggggtggtgccCCCTTCCATAAAGAGCAAGACCCGCAAAGCCCCTTCTAGATCCTCAACCAGCAACAGAAAACCTCTCCCACAAAAGCCGAAACGGGCACAGAATATTACTTCAATCTCCACCTCAAAAAAGAAGACTCTTCTGAACCTCAAGTATGTTACACCCCCCACTCCAACGAACAAGACCCAGAGTATCAAAATGGCCCCGGTCCCCACCCCCCTGAAAAAAATGTAATCGTCCTCAAAAAAGTCAAACAGAAAACCTCAGATATCTGTCAATATTATACCCACCTCACCAGAAaacactaccactacatcatCTTCACCAGAAAACAACAAGGACCAGATGTAGTGGCCCTTTCATCTATTACTATAACAACCCTTCTTATTCTATGCCTTTCTGTTGGTCAATATTTTAAAGAGCTCATACATGACCCTTTAAAAACAGAGTGATCAGTGGCCAACAGAGGGCGTCCAGAGCCCAGAGACATGAATAGCAAACTATTACTCAAACTATTACTGTTACTCTGTTTAAGTGACAACAATTACCATTGAGGATCTGATGTATTCTTTTTccagatttgttttattttgttttactgTTTTTAGAGAGGTAACGCTTATCACCCTCTTATCTGTGTAAGATCTGTACTTGTGCTAAAGATTACGAGGACATATTCCTACAAGGACATATTCTTACTAGGAGCTCAGCTATAAAGGGTAATTCCGCCACTTCATATTCATTCTCTCCTCcaccataccagtgtctacatgaaaatggtgcATTTCTATGATCTCTGGTAAAGAGCAGAAAGGTCCTCAAATGCTTCTCAATGAAATAACAGTGCATGATGAAAGTAAAAGTAAGATATTTTTTTAATCATGGCTGAATTACCGACCGGGCATGAAGGCCACgtgcccccattgattttgttagccaCTCTCACACAGATATAATtctaacatggcataagtcatggcaaaatgtgtagaatttcaggaaattagctttaaaacaaaGGAAAAAAAATCTTTACTCCATGGCAAAATCTGTCGAATTGTAGGAAATGTGCTGTAACACTAACAATTTTCCTCTTCAtctcatggcaaaatgagtaggtAGCCTAAAGGCagatagcctagcagttaagagtgttTGGCCATGAACcagaaggcagttaacccccatcaacaactgctccctgggtGCCATGGACGTTAAATAAGGCAGCCCACTGCACCtctaattcagaggggttgggttaaatgcagaaagcacatttcggttgaatgcattcacttGTGCAATTGACTAGGTTTCCTAATTCCCTGAAATtagttatacatttgcaaaatgtgtCCAATTTGCCATAAACGTGCTTTAAAGTTGCACAATTTTCTCTGTGCctatggtaaaatgtgtagaattgcaggaaatttactTTAAAACTAAAATAAATTATTCGCGGTCAAGAAagggggccactaaaatg
>TU1856875
GTCCTCAAAAAAGTCAAACAGAAAACCTCAGATATCTGTCAATATTATACCCACCTCACCAGAAaacactaccactacatcatCTTCACCAGAAAACAACAAGGACCAGATGTAGTGGCCCTTTCATCTATTACTATAACAACCCTTCTTATTCTATGCCTTTCTGTTGGTCAATATTTTAAAGAGCTCATACATGACCCTTTAAAAACAGAGTGATCAGTGGCCAACAGAGGGCGTCCAGAGCCCAGAGACATGAATAGCAAACTATTACTCAAACTATTACTGTTACTCTGTTTAAGTGACAACAATTACCATTGAGGATCTGATGTATTCTTTTTccagatttgttttattttgttttactgTTTTTAGAGAGGTAACGCTTATCACCCTCTTATCTGTGTAAGATCTGTACTTGTGCTAAAGATTACGAGGACATATTCCTACAAGGACATATTCTTACTAGGAGCTCAGCTATAAAGGGTAATTCCGCCACTTCATATTCATTCTCTCCTCcaccataccagtgtctacatgaaaatggtgcATTTCTATGATCTCTGGTAAAGAGCAGAAAGGTCCTCAAATGCTTCTCAATGAAATAACAGTGCATGATGAAAGTAAAAGTAAGATATTTTTTTAATCATGGCTGAATTACCGACCGGGCATGAAGGCCACgtgcccccattgattttgttagccaCTCTCACACAGATATAATtctaacatggcataagtcatggcaaaatgtgtagaatttcaggaaattagctttaaaacaaaGGAAAAAAAATCTTTACTCCATGGCAAAATCTGTCGAATTGTAGGAAATGTGCTGTAACACTAACAATTTTCCTCTTCAtctcatggcaaaatgagtaggtAGCCTAAAGGCagatagcctagcagttaagagtgttTGGCCATGAACcagaaggcagttaacccccatcaacaactgctccctgggtGCCATGGACGTTAAATAAGGCAGCCCACTGCACCtctaattcagaggggttgggttaaatgcagaaagcacatttcggttgaatgcattcacttGTGCAATTGACTAGGTTTCCTAATTCCCTGAAATtagttatacatttgcaaaatgtgtCCAATTTGCCATAAACGTGCTTTAAAGTTGCACAATTTTCTCTGTGCctatggtaaaatgtgtagaattgcaggaaatttactTTAAAACTAAAATAAATTATTCGCGGTCAAGAAagggggccactaaaatgttttgctgccGAGGTTTGCATGTAAAGGCTAGTAAACTTTGAAATGTGTGTGGACATTTCt

Function

NR:

description
PREDICTED: leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953845.1 False 3091 mRNA 0.45 6 38935415 38939516
XM_036953846.1 False 2693 mRNA 0.46 7 38935415 38939611
TU1856875 True 1317 lncRNA 0.38 1 38935354 38936670
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Neighbor

gene id symbol gene type direction distance location
LOC110497791 LOC106600514 coding downstream 8504 38911281 ~ 38926911 (-)
LOC110497790 gnpi coding downstream 36594 38892389 ~ 38898821 (-)
LOC110497787 LOC106600539 coding downstream 173255 38709218 ~ 38762160 (-)
LOC110497783 LOC106600563 coding downstream 261168 38654186 ~ 38674247 (-)
dapp1 dapp1 coding downstream 281382 38645382 ~ 38654033 (-)
ampm1 ampm1 coding upstream 46186 38985797 ~ 38988755 (-)
enpp4 enpp4 coding upstream 285079 39224690 ~ 39231092 (-)
cdc5l LOC106599718 coding upstream 302587 39242198 ~ 39263880 (-)
LOC110498575 LOC106599699 coding upstream 336632 39276243 ~ 39278434 (-)
LOC110497802 LOC105031663 coding upstream 339085 39278696 ~ 39285767 (-)
G1622775 NA non-coding downstream 3063 38931301 ~ 38932352 (-)
G1622772 NA non-coding downstream 7104 38927707 ~ 38928311 (-)
G1622771 NA non-coding downstream 7792 38927407 ~ 38927623 (-)
G1622764 NA non-coding downstream 24189 38910945 ~ 38911226 (-)
G1622763 NA non-coding downstream 24845 38910282 ~ 38910570 (-)
G1622784 NA non-coding upstream 64219 39003830 ~ 39005396 (-)
G1622892 NA non-coding upstream 232097 39171708 ~ 39171949 (-)
G1622914 LOC100380701 non-coding upstream 255876 39195487 ~ 39196095 (-)
G1622918 LOC106599729 non-coding upstream 265686 39205297 ~ 39207491 (-)
G1622936 NA non-coding upstream 281072 39220683 ~ 39220918 (-)
LOC110497753 spred1 other downstream 2166716 36654523 ~ 36840800 (-)
G1619119 NA other downstream 2530079 36401554 ~ 36405336 (-)
LOC110498336 LOC106611177 other downstream 3538632 35392412 ~ 35396783 (-)
G1615810 hectd1 other downstream 5455979 33478593 ~ 33479436 (-)
G1615793 NA other downstream 5522198 33412219 ~ 33413217 (-)
G1622757 LOC106600509 other upstream 17413 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 425646 39365257 ~ 39370631 (-)
G1623037 LOC106586451 other upstream 456457 39396068 ~ 39411784 (-)
G1623175 NA other upstream 735828 39675439 ~ 39681529 (-)
LOC110497838 trmt5 other upstream 1527733 40467344 ~ 40547622 (-)

Expression

lrit3b(LOC106600744) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.3.
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lrit3b(LOC106600744) Expression in each Bioproject

Bar chart with 17 bars.
lrit3b(LOC106600744) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network