cdc5l (LOC106599718)


Basic Information

Item Value
gene id cdc5l
gene name LOC106599718
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 39242198 ~ 39263880 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574172.2
TTCCGGTGTCCGCCATATTGCATTTCTGTCCATGTTGAAAACATAACGCGTTCGTGTATCGTAGTAAAAAAAATTGTCCAACTCTTCGTATTGTTTTATTTTGGGGGATCTTAGTTGTTTCTTTATAATTACTACCTGAAGGGTAGCAACACACAACAGCCAAGATGCCGCGTATAATGATCAAGGGGGGTGTATGGCGAAACACCGAGgATGAGATCCTGAAGGCAGCGGTGATGAAATATGGGAAGAATCAGTGGTCTCGTATTGCCTCCCTGCTGCACCGCAAGTCTGCCAAACAGTGCAAGGCCcgctgGTATGAGTGGTTGGATCCAAGCATTAAGAAAACTGAGTGgtccagagaggaagaggagaaactaCTCCATCTGGCCAAGCTGATGCCGACCCAGTGGAGGACCATTGCTCCTATCATAGGACGCACCGCTGCCCAGTGTCTGGAGCACTACGAGTTCCTGCTAGACAAAGCGGCCCAGAGGGACAATGAGGAGGATACAGCTGACGATCCAAGGAAACTGAAACCTGGTGAGATCGACCCCAACCCTGAAACCAAGCCCGCTAGGCCTGACCCTGTGGACATGGATGAAGATGAGCTGGAGATGCTTTCTGAGGCCAGAGCTCGTCTGGCCAACACTCAGGGGAAGAAAGCTAAGAGGAAAGCCAGAGAGAAACAGCTGGAGGAGGCCAGACGTCTGGCTGCTCTACAGAAGCGCAGGGAGTTGCGGGCCGCAGGCATCAATGcccagaagaagaggaagaagaagagaggagtggacTACAATGCTGAGATCCCTTTTGAGAAGAAGCCTTCTCAGGGTTTCTATGACACCAGCATGGAGCTCTACGAAGGTCTGGAACCAAACTTCAAACGCCTGCGACAACAACACCTGGATGGAGAGCTACGCAATGaaaaggaagagaaggagaggaagagggatagacagaagatcaagaagaagaaggagagtgatCTTCCATCAGCCATCCTGCAGACCAGCGGAGTAGCAGAGTTCACCAAGAAACGCAGCAAACTGGTGCTGCCTGCACCGCAGatctcTGATGCGGAGCTGGAGGAGGTGGTGAAGCTGGGTCAGGCCAGTGAAGTGGCTCGTCAGACCGCAGAGGAGTCTGGGATCACTAACTCCGCCTCCTCAGCCCTCCTATCAGAATACAGCCTCACCAACAGCGCTATGGCAACTGGGCTACGCACCCCCAAGACCCCTGCTGCACAGGACAAGATACTACAGgaggccCAGAACCTTATGGCTCTGACTAACGTAGACACTCCTCTGAAAGGAGGTCTGAACACTCCTCTTCACCAGAGTGACTTCTCAGGAGTCACACCCCAAAGACAGGCAGTACAGACACCTAATACTGTACTGACCACACCTTTCAGGACCCCCGGTCCAGGGTCAGAGGGCAGTATGACCCCCCAGGGAGGTTTAACCCCTAAAGGACCCGGTACTGTTACCCCTGGAGTAACCCCGGGACGCACCCCTCTACGAGACAAACTCAACATCAATACTGAGGAACAACTAGCGGATCCTGCCTACGCTAAACATCTGcaacgAGAGTCGAGGGAGCAGCTGAAGCTGGGTCTGATGTCGCTGCCAGTCCCGAAGAATGACTTTGAGATTGTTCTACCAGAAAATGCAGAGACTCAACTGGAGgaaatggagacagagacaggatacATAGAGGATGCCTCGGAGATAGAGCTACGCAGACAGgctgTTCGGGacgcagagagggagaaagagctgAAGCTGAGGCACACTGCTGTACAGAGGACTTTACCCAGACCATCAgagGTGAATGAGTCCATCCTGCGTCCAATGGGAACAGATCCTCTGTCAGAGCTGCAGCATGCTGAGGAGATGATCAAGAAGGAGATGATCACCATGCTGCACTTTGACTGTCTACACCACCCACCAGCCAACCAACAGCGCAGCAAACAACGAGGGCCTTCCTCCACCTCCAACAATGCAGAACACATCGCCCACCTGGACAGACACCCCTACCAGCCAATCAGCAATGAGGATTTGGCACAGGCCAGTGAGTTGCTGAGCCAGGAGATGGAGGTGGTGAGGGCAGGTATGGGTCACGGGGACCTGTCCATGGAGGCTTACAGCCAGGTGTGGGAGGAGTGTTACGGCCAGGTGCTGTACCTCTCTGCCCAGAGCCGCTACACCAGGGCCAACCTGGCCTCCAAGAAGGACAGAATAGACTCCCTGGAGAAGAAGCTGGAGATAAACCGAGGCCATATGACATGTGAGGCCCGTCGTGCTGCTCGTCTGGAGCGCCGTCTCAAGgtgttacTAGGAGGGTACCAGTCCCGTGCTGTAGGCCTACTGAAGCAGCATGGTGAACTGTGGGAGCAGGTTGAGCAGGCAGCTACAGAGCTCCACACCTTCACTGAGCTGAAGAAACAAGAAGACACAGCTATACCCCGCAGACAAGAGGCTCtaagggaggatgtggagagacagcaggagagagagaaggagctgcAACAGAGATATGGAGACCTGCTGCTGGAGAAAGACGCTCTGCTGTCTGCCAAATTCTAACATGCATACACCATACGTGCTTACTACACACAGCAAACACATAAGACCAACACATACTACGAAAACACATTGAGTAAATGCACACACGCTGCTGGAGGTGTCTGCTAAAGCACAGGATCATAGCCACCCTCGTCTCCCTCAGCAAAtctgtgagaaaaaaaaatattgtgctGATTTGCTTTTTATTTTCCAAAGTTAAAAAGACATGCAAGTGAATGAACCTATTGTAACTCCGCCTCTATGTTTTGATGTCATGGCCCAGTGCTGTGAGCATGCTAAGTAGTTACCTAGTGTCAGTTTGTCCTCTGACTAGTGATCAGTGGTTCATGTCTTGTCATTGGAATAAAAGAGATCAATAGAAATCTGA

Function

NR:

description
cell division cycle 5-like protein

GO:

id name namespace
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574172.2 True 2952 mRNA 0.52 19 39242198 39263880

Neighbor

gene id symbol gene type direction distance location
enpp4 enpp4 coding downstream 11106 39224690 ~ 39231092 (-)
ampm1 ampm1 coding downstream 253443 38985797 ~ 38988755 (-)
lrit3b LOC106600744 coding downstream 302587 38935354 ~ 38939611 (-)
LOC110497791 LOC106600514 coding downstream 315287 38911281 ~ 38926911 (-)
LOC110497790 gnpi coding downstream 343377 38892389 ~ 38898821 (-)
LOC110498575 LOC106599699 coding upstream 12363 39276243 ~ 39278434 (-)
LOC110497802 LOC105031663 coding upstream 14816 39278696 ~ 39285767 (-)
si:dkey-229e3.2 LOC106599591 coding upstream 101378 39365257 ~ 39370631 (-)
si:dkey-196h17.9 LOC106586342 coding upstream 234740 39498620 ~ 39503300 (-)
ckba ckb coding upstream 286619 39550499 ~ 39561200 (-)
G1622936 NA non-coding downstream 21280 39220683 ~ 39220918 (-)
G1622918 LOC106599729 non-coding downstream 34707 39205297 ~ 39207491 (-)
G1622914 LOC100380701 non-coding downstream 46103 39195487 ~ 39196095 (-)
G1622892 NA non-coding downstream 70249 39171708 ~ 39171949 (-)
G1622784 NA non-coding downstream 236802 39003830 ~ 39005396 (-)
G1622987 NA non-coding upstream 62409 39326289 ~ 39326730 (-)
G1623038 LOC106586451 non-coding upstream 136360 39400240 ~ 39404651 (-)
G1623061 eif5 non-coding upstream 255097 39518977 ~ 39558601 (-)
G1623106 LOC106610955 non-coding upstream 266980 39530860 ~ 39531284 (-)
G1622757 LOC106600509 other downstream 283224 38957024 ~ 38958974 (-)
LOC110497753 spred1 other downstream 2473499 36654523 ~ 36840800 (-)
G1619119 NA other downstream 2836862 36401554 ~ 36405336 (-)
LOC110498336 LOC106611177 other downstream 3845415 35392412 ~ 35396783 (-)
G1615810 hectd1 other downstream 5762762 33478593 ~ 33479436 (-)
G1623037 LOC106586451 other upstream 132188 39396068 ~ 39411784 (-)
G1623175 NA other upstream 411559 39675439 ~ 39681529 (-)
LOC110497838 trmt5 other upstream 1203464 40467344 ~ 40547622 (-)
G1624738 NA other upstream 1365885 40629765 ~ 40630208 (-)

Expression


Co-expression Network