LOC110497802 (LOC105031663)


Basic Information

Item Value
gene id LOC110497802
gene name LOC105031663
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 39278696 ~ 39285767 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574177.2
ATGCGTTCTGCCAGGGTGCCCGGCTCCACATGCAGCTGCAGAACAAACTGGACTCAGCTACTAGCTTCGTCGACGCAGGGAACGCTTACAAGAAGGCTGATCCTCAGGGGTAGGTTTACTATTGCAGCCAAACATCACATCACTATCGCAGAGGTGTATGagtctgagctggtggacatagAGAAGGCGATCGCCCACTATGAGCAGGCAGCCGATTATTATAAAGGGGAGGAGTCCAACAGttctgCTAACAAGTGTCTGCTGAAGGTGGGCCACTACAGTGCTCAGCTGGAGCAGTATCCGAAAGCCATTGAGATCTACGAGCAGgtggcCACCAATACCATGGACAACCCCCTGCTGAAGTATAATGCCAAAGAGTACTTCTTTAAAGCCTCCCTCTGTCACTTCATAGTGGATGAACTCAACGCAAagCTGGCCATAGAGAAGTATGAGGAGATGTTTCCTGCTTTCGCAGACTCCAGAGAGTGCAAGCTGCTGAAGaagTTGCTGGATGCCCATGAGGAGCAGAACTGTGAGGCGTTTACTGAAGCTGTTAAAGAGTTTGACTCCATCTCTCGTCTGGACCAATGGCTCACCACCATGCTGCTCCGTATCAAGAAGACCATCCAGGGAGATGCTGGAGATCTCaaataaagagagatagaggggtgggTTGGGGGAGGATacaagagggagggatagagaaaaAGATGGCTAGatagagagatgatggagagaggatggacagagagagaaggagagatgagggagaaagggatggagggagagatataggGTTAGGGCAGTGGGGTGAAGGGAGACAGGTCTCTATGCGTTTGATGTGTTCAGTGTAAATAAGTCCATGGCTCCTGTAGTCTATCGTGTCTTACCATACCTTTCCTCACACTCCTGTCAAAAACGTTAGCAGTTTCAACTTAAAATAGGAGTTACCCAGCTGATGTAAAGTTACATCAACTTATCAAGTTGAGTTGACAAAACCAGGGAACAAATGATTAGATACATTATAGTATACAAGTTCATACAACTTTATATTTTAGGTCAGTGGGGTACACTTACACTCATGTTTTTAAGTTGAAAGCCttttacagtgcatgtcacacTTAACCTTCCTAACCTCTCCACTGAATGTCTTCCCTTGTTTGGGCCCTGTATGTTCATGTTTTAAAGTGTAGGGCTGTACAGATAGTGTGTGAAaaggtggagtgtgtgtgtgtgtgtgtggcacgcaCACAATGTATCACATTGAAGCCAATATATCTGTGCCAGTGCTGGttgctgttgtttttgttgttttgtgtgtgtgtgtgtgtgagagagagagagagaaacaaccaAAGGGACAccccgttctattcattctatttctatgctccCCTCAGATATGTTTTCCACCCCTAGACACTTCCCCTAACCCGCTACACACTTATGATCTGAAAGGATTGGATAGGTATAAGCACACACATATCCAATCCTCTCAGGTCTACACATGTGTTAAGGGTCAGAGGTTACAGGGTTAAGGCCAGAGATTATGGGAAGTGTctgtaatgtagtgtgtgttgcTGTGGTGTGTGTATTCCTCTCAGCATGTTGCCATGGTAAtgatgtgtgtgttcagtgttgtGTGCAGTCAAACTACAGGTTATCACACATATCTCTATGTTCATGAATTACCACACGTTTGTGCAAAAAAATTTACTAAAAATAAAACTTCCAACAAACTTG
>XM_021574176.2
AGTCACACAACCGAGTAAGATTCTCTCTCATCAGCACCACCTCTCAGCATCCATTCCCAGCTAAACGGATTCTCCGGAATATTTGTTTTTACCTTGTcgacgacacacacacagcccaaacaGCGATGGATACCTCCGGGAAAGAGAAGGAGGCGATGCAGCTGATGGCTGAAGCCGACAAGAAGGTCAAATCCTCCGGCTCATTCCTGGGGGGGATGTTCGGgggGAGTCACCATAAAGTAGAAGATGCATGTGAGATGTACGCCAGAGCAGCCAACATGTTCAAGATGGCCAAAAACTGGACTGctgctgGTAATGCGTTCTGCCAGGGTGCCCGGCTCCACATGCAGCTGCAGAACAAACTGGACTCAGCTACTAGCTTCGTCGACGCAGGGAACGCTTACAAGAAGGCTGATCCTCAGGAGGCTATCAACTGTCTAAATGCAGCCATCGATATTTACACTGACATGGGTAGGTTTACTATTGCAGCCAAACATCACATCACTATCGCAGAGGTGTATGagtctgagctggtggacatagAGAAGGCGATCGCCCACTATGAGCAGGCAGCCGATTATTATAAAGGGGAGGAGTCCAACAGttctgCTAACAAGTGTCTGCTGAAGGTGGGCCACTACAGTGCTCAGCTGGAGCAGTATCCGAAAGCCATTGAGATCTACGAGCAGgtggcCACCAATACCATGGACAACCCCCTGCTGAAGTATAATGCCAAAGAGTACTTCTTTAAAGCCTCCCTCTGTCACTTCATAGTGGATGAACTCAACGCAAagCTGGCCATAGAGAAGTATGAGGAGATGTTTCCTGCTTTCGCAGACTCCAGAGAGTGCAAGCTGCTGAAGaagTTGCTGGATGCCCATGAGGAGCAGAACTGTGAGGCGTTTACTGAAGCTGTTAAAGAGTTTGACTCCATCTCTCGTCTGGACCAATGGCTCACCACCATGCTGCTCCGTATCAAGAAGACCATCCAGGGAGATGCTGGAGATCTCaaataaagagagatagaggggtgggTTGGGGGAGGATacaagagggagggatagagaaaaAGATGGCTAGatagagagatgatggagagaggatggacagagagagaaggagagatgagggagaaagggatggagggagagatataggGTTAGGGCAGTGGGGTGAAGGGAGACAGGTCTCTATGCGTTTGATGTGTTCAGTGTAAATAAGTCCATGGCTCCTGTAGTCTATCGTGTCTTACCATACCTTTCCTCACACTCCTGTCAAAAACGTTAGCAGTTTCAACTTAAAATAGGAGTTACCCAGCTGATGTAAAGTTACATCAACTTATCAAGTTGAGTTGACAAAACCAGGGAACAAATGATTAGATACATTATAGTATACAAGTTCATACAACTTTATATTTTAGGTCAGTGGGGTACACTTACACTCATGTTTTTAAGTTGAAAGCCttttacagtgcatgtcacacTTAACCTTCCTAACCTCTCCACTGAATGTCTTCCCTTGTTTGGGCCCTGTATGTTCATGTTTTAAAGTGTAGGGCTGTACAGATAGTGTGTGAAaaggtggagtgtgtgtgtgtgtgtgtggcacgcaCACAATGTATCACATTGAAGCCAATATATCTGTGCCAGTGCTGGttgctgttgtttttgttgttttgtgtgtgtgtgtgtgtgagagagagagagagaaacaaccaAAGGGACAccccgttctattcattctatttctatgctccCCTCAGATATGTTTTCCACCCCTAGACACTTCCCCTAACCCGCTACACACTTATGATCTGAAAGGATTGGATAGGTATAAGCACACACATATCCAATCCTCTCAGGTCTACACATGTGTTAAGGGTCAGAGGTTACAGGGTTAAGGCCAGAGATTATGGGAAGTGTctgtaatgtagtgtgtgttgcTGTGGTGTGTGTATTCCTCTCAGCATGTTGCCATGGTAAtgatgtgtgtgttcagtgttgtGTGCAGTCAAACTACAGGTTATCACACATATCTCTATGTTCATGAATTACCACACGTTTGTGCAAAAAAATTTACTAAAAATAAAACTTCCAACAAACTTG

Function

NR:

description
PREDICTED: beta-soluble NSF attachment protein isoform X1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574177.2 False 1743 mRNA 0.45 7 39278696 39281695
XM_021574176.2 True 2105 mRNA 0.46 10 39278696 39285767

Neighbor

gene id symbol gene type direction distance location
LOC110498575 LOC106599699 coding downstream 262 39276243 ~ 39278434 (-)
cdc5l LOC106599718 coding downstream 14816 39242198 ~ 39263880 (-)
enpp4 enpp4 coding downstream 47604 39224690 ~ 39231092 (-)
ampm1 ampm1 coding downstream 289941 38985797 ~ 38988755 (-)
lrit3b LOC106600744 coding downstream 339085 38935354 ~ 38939611 (-)
si:dkey-229e3.2 LOC106599591 coding upstream 79491 39365257 ~ 39370631 (-)
si:dkey-196h17.9 LOC106586342 coding upstream 212853 39498620 ~ 39503300 (-)
ckba ckb coding upstream 264732 39550499 ~ 39561200 (-)
LOC110497819 bag5 coding upstream 304574 39590341 ~ 39605843 (-)
LOC110497823 LOC106599217 coding upstream 403791 39689558 ~ 39692818 (-)
G1622936 NA non-coding downstream 57778 39220683 ~ 39220918 (-)
G1622918 LOC106599729 non-coding downstream 71205 39205297 ~ 39207491 (-)
G1622914 LOC100380701 non-coding downstream 82601 39195487 ~ 39196095 (-)
G1622892 NA non-coding downstream 106747 39171708 ~ 39171949 (-)
G1622784 NA non-coding downstream 273300 39003830 ~ 39005396 (-)
G1622987 NA non-coding upstream 40522 39326289 ~ 39326730 (-)
G1623038 LOC106586451 non-coding upstream 114473 39400240 ~ 39404651 (-)
G1623061 eif5 non-coding upstream 233210 39518977 ~ 39558601 (-)
G1623106 LOC106610955 non-coding upstream 245093 39530860 ~ 39531284 (-)
G1622757 LOC106600509 other downstream 319722 38957024 ~ 38958974 (-)
LOC110497753 spred1 other downstream 2509997 36654523 ~ 36840800 (-)
G1619119 NA other downstream 2873360 36401554 ~ 36405336 (-)
LOC110498336 LOC106611177 other downstream 3881913 35392412 ~ 35396783 (-)
G1615810 hectd1 other downstream 5799260 33478593 ~ 33479436 (-)
G1623037 LOC106586451 other upstream 110301 39396068 ~ 39411784 (-)
G1623175 NA other upstream 389672 39675439 ~ 39681529 (-)
LOC110497838 trmt5 other upstream 1181577 40467344 ~ 40547622 (-)
G1624738 NA other upstream 1343998 40629765 ~ 40630208 (-)

Expression


Co-expression Network