si:dkey-196h17.9 (LOC106586342)


Basic Information

Item Value
gene id si:dkey-196h17.9
gene name LOC106586342
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 39498620 ~ 39503300 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574198.2
GTTTCATACTTCAATAAATTATTTTTCTCAGTCAACCATAAATATGTCTACTGTGGCAGACACAAATAGGCCTACAGtactttttcatatttttttcctaTGAAACCAGACCAACAGCTTGTTATGGGCCTGTTATGAGTGGATTAGCAATCACGTTTATCCAGAGCCCCTTCCAGGAGGCGGGGTTGGGGAATTTGATTATGTAAACATTGAATGAAACAACCAGGTAGATCAGTTGTTATTAAGGAATATACCAAATATTCCCCCACACTTTGAAAATGTTCCCGACCTGGGAAAGTTTTGGGGAATTCAAAACAGTTGATTCATACCATCACCCAGTTAGGCAAGTGCTGCATAATGCTAATTTGTTCAGACTATAACCTCCAGCATGTTTACCTTAAAATGTATTGTTTCCTGTCATCAGTTAGTCCATTTAACAGATCAGTTGGTCTATTAACAGGATTCTCATAAAAAAGTCTTCACAATGAGTGTATTGTTCAACATGTAATGGTATATAGGTGTGCAGGACAATACAATGCAGCCACAGAAACTGAAAGCAACACTGACTGTGGTGTCTACAATCAGGAAATGGGAAATTCCCTGCTCCAGCACCACTCTATATCGTTTGGTAGACGGTCAATTGTATGGATATTGGTGGTTGGTTGACGAACTGTGACTTACAGTATTCCTCATTTGGACTACTGTACATGTACTTGCTACATCCTCTCAAGATATTCCATCATCATATCCACCTACTTGGATTCTGACTAAGGACCAGTTGAGTTCAGCAGTGGTCCCTTTTGTGGCAATCAGTGTGTCAGGCAATCAACCCAGAAGAAAACCATGAAGAAATTCAACTTCATGAGCAGAAAGAGTAAGCCATTGGGGATAGAGGACGGGAGTCCTCTGATTAAGAACAGTACACTGCCTACAGATGAAGAGGAACAAACCGGGAATGTGGGACATGGGAATCCCTACTTGGAGAATGGCTTTAACAATCATCAGGAGTTGGGCAGTCAGGGGGGTCAGGAGAACGGACAGTCATTGCTCAGTGTACTTGCAGAAGCTTTGAGGGTCAGCCATGTTGGCCCTCAAGAGAGACTTGAAGCTAATTTGGAGGGGCCACCAGAAGAGATTATGTGCCATGAGGCTCAGAAGAAGGACGATACACACCCAGAAGTCTTGCTCCAGAGGTACTTTCATCTTATTGAAGCGTCTGTGGACAAACACTTCCCCAAACTGCCAGCAGGGAACACTGTGAATCAGCTGGAGGGCTACCTGATAAAAGTGCAAATAACTGTGCAAGGGGAGCTTCTGAGGTTGGCACCCCTGCTCAAAGAGGCTCAGTTGCGGAAGCATTTGATTGCTTGCTATCATCAGCGTATGTTTGACTGTCTACAGCAGATccttcagcatgtcaacacaaaAAAAGAGGCCTTCACAGTTCTTGACTGGGTACTACGCACATACTTGAGTGAGGAGCTGCTAGGACACCCCAACATCTGGGGTGAGGCTCTACATGCAGTTGACCTTCTCCTTCTGACAGACTGGATCCCACAAGCTGAGAATAAACTCTTGGCCATTGTGCAGGAGGACATCTCCACATCACTGAGGAGGATCCTTCAGAACGAGGAGTCAGgtagagaggtgtgtgtctctGGAGAGGAGGCCTTTATCAAACTGCATCTGGATGTCATCCAGTGCATCAATGCTGTTCTCCAGAAAGCAAAGATGATGAGCCAAACTCTGATGCGCAAGGTCCAAATAGTCTGTTGGCAAGAGCTACAGGACTTTGTGGAAAGGTATGTCAATATTGAAAAGAAGCACCTTCAGAAACAAGCAGGAAGGGGAACGTCAGGTACAATGCACTTCTTTAAAACGTTCAACACCTGCATTGAACTCAAGTTGTATATTTCAAGGATTGCCAAAGATGACACAAGCTTAGACTGTGTTAAAACCATATCAACACTTAAGGGGTTGGAGGCTCTTTCTTGGAAGCTTCTCCTGGAAAAACCAATTCAACTTGCACAgATTTCCTTGAAGAAGTATTTCAAAAAAGAGGATGAACAAATGGAAAATCTAATGAAAGAGATTACATTTATTTTCCAAGACCTTCCCAAAGACAAGGATACGCAAAAGACTGTGATTAGCAAAGCCTATCAGTGCATCACCCTTCTGTACCTCCAACACCTGGTGCAGAGTAACCATGGGAAGCTGGTGAAGAGATGGGATTATGTGAACAAAAGAGTGATGCATGATGCCGAGCTCCTTCACTCCATCTTCTCAGTCCTGAATCCTGATGTTAAACAGTGGAACATCATACTGATTAAAGTGAGAGAAGTGCTGGAATGCAGAGACATTGAAAGTCTCAAGATAATAGTCAGTGAGATACTGAGGGACAATGCCAGTACAAGTGCTGCTGAGCACCTTCCAGCCCTGCTGCGCTGGAAGGGAGGCCTGTCATGGAGACTGACCCGGGAGGTTCTGGAGGCAAGCCAGGAAGTGTACCCCATTGACCTCTCCCAAACCAGGTCTGCACCCTGGTTTGACTGCCTTCTTTGCTGCTGAGTGTGTGAACTGGGACGTCTCAGGCAAAGGACAATAACGACCCCACTctaacaacatgacaacacaatatTTGGAACTATGTCTTTGTCAACTTTTTAAAGATATTGTATGGCAAGTTATTATTTAATGTcttaaagaagaagaaaaatacatatttgaAATTGGAATTAAAA

Function

NR:

description
exocyst complex component 3-like protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574198.2 True 2741 mRNA 0.44 11 39498620 39503300

Neighbor

gene id symbol gene type direction distance location
si:dkey-229e3.2 LOC106599591 coding downstream 127989 39365257 ~ 39370631 (-)
LOC110497802 LOC105031663 coding downstream 212853 39278696 ~ 39285767 (-)
LOC110498575 LOC106599699 coding downstream 220186 39276243 ~ 39278434 (-)
cdc5l LOC106599718 coding downstream 234740 39242198 ~ 39263880 (-)
enpp4 enpp4 coding downstream 267528 39224690 ~ 39231092 (-)
ckba ckb coding upstream 47199 39550499 ~ 39561200 (-)
LOC110497819 bag5 coding upstream 87041 39590341 ~ 39605843 (-)
LOC110497823 LOC106599217 coding upstream 186258 39689558 ~ 39692818 (-)
syne2b LOC106599102 coding upstream 451826 39955126 ~ 40097979 (-)
kcnh5b LOC106599078 coding upstream 608416 40111716 ~ 40194268 (-)
G1623038 LOC106586451 non-coding downstream 93969 39400240 ~ 39404651 (-)
G1622987 NA non-coding downstream 171890 39326289 ~ 39326730 (-)
G1622936 NA non-coding downstream 277702 39220683 ~ 39220918 (-)
G1622918 LOC106599729 non-coding downstream 291129 39205297 ~ 39207491 (-)
G1623061 eif5 non-coding upstream 15677 39518977 ~ 39558601 (-)
G1623106 LOC106610955 non-coding upstream 27560 39530860 ~ 39531284 (-)
G1623130 NA non-coding upstream 71381 39574681 ~ 39575099 (-)
G1623129 NA non-coding upstream 148431 39651731 ~ 39652207 (-)
G1623128 NA non-coding upstream 151369 39654669 ~ 39656645 (-)
G1623037 LOC106586451 other downstream 86836 39396068 ~ 39411784 (-)
G1622757 LOC106600509 other downstream 539646 38957024 ~ 38958974 (-)
LOC110497753 spred1 other downstream 2729921 36654523 ~ 36840800 (-)
G1619119 NA other downstream 3093284 36401554 ~ 36405336 (-)
G1623175 NA other upstream 172139 39675439 ~ 39681529 (-)
LOC110497838 trmt5 other upstream 964044 40467344 ~ 40547622 (-)
G1624738 NA other upstream 1126465 40629765 ~ 40630208 (-)
G1624737 NA other upstream 1127278 40630578 ~ 40631738 (-)
LOC110498350 NA other upstream 1192175 40689096 ~ 40699267 (-)

Expression


Co-expression Network