LOC110497823 (LOC106599217)


Basic Information

Item Value
gene id LOC110497823
gene name LOC106599217
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 39689558 ~ 39692818 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574240.2
TGGCAGCGAGCTGGGCGTCCGAGAGGATTAcaccaaaaataaataaaaaatagacaGCAACTAAAACTCTCGCCCCGAAAAATGACCATTCACATCGTATCCAGACTGCAGCTAATGAGTAACCCACGCCTTGTCCTAGTTGATAAGTAGCTTTTGGAGAAAAACATCTGCCAGTATTTGCTCAGGAAAACAGCGGACTCTAAGCGAGCAACGATTATTTGGATTTACCATCTGTTCGAAAAGCGAGAACATAATACGTTTTGGGGAGACAACTCAGAGGCAACAAGAGGATGAaatgagaaagagaaaaaaagtatTCAACCTCAAGTTGGAATTACAACCCAATTGGACGGATATTGTTTATGTTGCTCTTACAATTGATTCGGGGTTAGTAGACTTCATAATCGCTGAATTTATGCAGCATAGTTCTATAAATGACACGATTTGTGTATCAATTGTCAACGCAGAATAATAGCTACTACAGTAGATCAGAGTTCGTGGTTTATTTATAGGAAAGGGATCAACGCTTTGTGTGCCGATGCCAACAGCAGATTGCAGGTTGCTCCATCATGGTCGGATCATGAAGTGTTTGACTTTTTTACTCTTACTTCCAGAAACACTGAAAAAGTCTAAAAAGACTGGGAGAAACACAGGCAGGTTACCAGTATGCTATGAGATTCTAACCCTGTCCCTGAAGAAGAAGATGGCTGCAGAACTGTACCCTGCGACCACCAATCTAACCAACAACGGTACTACGGTGACCGCCAGTGACAAGAAAAGCGATGTGCAGGTCACCCAGTCTACAACCACTGCAACAACACCGACCACCCAGcaaaacataaacaacaacaacgtCGATCCTCCCAGCTGGCAGTCCTCTCACCCCACGCTACGGGAGAGGAATGCCTTGATGTTCAACAATGAACTCATGGCCGATATACATTTCATTGTTGGTCCCCCTGGTGAATCTCAGAAAGTACCAGTGCACAAGTATGTGTTGGCAGTGGGTAGCTCCGTCTTCTGTGCCATGTTTTACGGGGATCTTGCAGAGGAGGAGTCCGAAATCCATATCCCAGACGTGGAACCTGCTGCTTTTCTAATTCTGCTGAATTACATGTACAGTGATGCGATAGACCTGGAGGCGGACACCGTGCTGGCTACCCTGTACGCTGCCAAGAAGTACATTGTACCAGCCCTGGCCAAGGCCTGCGTCACCTTCCTGGAGACCAGCCTGGAGGCCAAGAACGCCTGTGTGCTGCTGTCCCAGAGCCGTCTGTTTGAGGAGCCTGAGCTGACACAGCGCTGCTGGGAGGTGATTGACGCCCAGGCCGAGCTGGCCCTGGGCTCCGAGGGCTTCTGTGAGATCGACCTGCAGACCCTGAAGATCATCCTGCAGAGAGAGACTCTCAACACCAAGGAGGTGGTGGTCTTTGATGCCATGATGAGCTGGGCCACAGCTGAGTGTAAGAGGCAAGGACTGAGGGCAACCACCCACAACAAGAGATCTGTCCTGGGCAAGGCACTCTACCTGGTGCGCATCCCCACTATGACACTGGAGGAGTTTGCTGATGGGGCGGCCCAGTCAGACATCTTGACACTGGAGGAGACGCATGACATTTTCCTGTGGTACACAGCGGCCACCAAGCCCAAACTGGACTTCCCACTGGCACAGAGGCAGGGCCTGGCGCCCCAGAGGTGCCACCGCTTCCAGTCGTCAGCCTACCGGAGCAACCAGTGGCGCTACAGGGGCCGCTGTGACAGCATCCAGTTTGCAGTGGACAAGCGGATCTTTATCGCTGGACTGGGTCTGTACGGGTCAAGTGGCGGAAAGGCTGAGTACAGTGTCAAGATTGAACTGAAGCGGCAAGGGGTGACCCTAGCACAGAACCTGACCAAGTTTGTGTCGGACGGATCAAGCAGTACATTTTCTGTGTGGTTTGAACACCCAGTTCAAGTGGAGCAGGATGCCTTTTATACGGTGAGTGTCGTGCTGGACGGGAATGAGCTGAGCTATTTTGGCCAGGAGGGCATGACGGAGGTGCAGTGTGGAAAAGTGACTTTTCAGTTCCAGTGCTCCTCGGACAGTACCAACGGGACTGGGGTGCAGGGGGGACAGATCCCGGAGCTGGTGTTCTATGCATAAGCTGGATTGGTCataaggagaggtagagaacatATAGACCATACTGTACATCCATATGTTGCAGCCTTATAAATAATGTAGCATTAAGACACTAGAGTGTCAGACTAAACAAAATACTATTTTTTAAGTCAAGGAACGTTTTATCTTATTTATttcaaataaaaatgttatttgtattattttaattAACGCTGCAAAATGCAGTCCCTTGTAAAAAAGTCATATTGCACTTGTGGACAGTCTCTGCAATGTTGTTTTGTACATAAAACACAGTTAAATGGTTTGCAGCTTGATGCTGATCAACCATGATGTTCCTGTTTGAGAGCTTACAAACCTGCAGAAAATCATAAACATTTTGTGAGAAGCCA
>XM_021574241.2
TGGCAGCGAGCTGGGCGTCCGAGAGGATTAcaccaaaaataaataaaaaatagacaGCAACTAAAACTCTCGCCCCGAAAAATGACCATTCACATCGTATCCAGACTGCAGCTAATGAGTAACCCACGCCTTGTCCTAGTTGATAAGTAGCTTTTGGAGAAAAACATCTGCCAGTATTTGCTCAGGAAAACAGCGGACTCTAAGCGAGCAACGATTATTTGGATTTACCATCTGTTCGAAAAGCGAGAACATAATACGTTTTGGGGAGACAACTCAGAGGCAACAAGAGGATGAaatgagaaagagaaaaaaagtatTCAACCTCAAGTTGGAATTACAACCCAATTGGACGGATATTGTTTATGTTGCTCTTACAATTGATTCGGGAAACACTGAAAAAGTCTAAAAAGACTGGGAGAAACACAGGCAGGTTACCAGTATGCTATGAGATTCTAACCCTGTCCCTGAAGAAGAAGATGGCTGCAGAACTGTACCCTGCGACCACCAATCTAACCAACAACGGTACTACGGTGACCGCCAGTGACAAGAAAAGCGATGTGCAGGTCACCCAGTCTACAACCACTGCAACAACACCGACCACCCAGcaaaacataaacaacaacaacgtCGATCCTCCCAGCTGGCAGTCCTCTCACCCCACGCTACGGGAGAGGAATGCCTTGATGTTCAACAATGAACTCATGGCCGATATACATTTCATTGTTGGTCCCCCTGGTGAATCTCAGAAAGTACCAGTGCACAAGTATGTGTTGGCAGTGGGTAGCTCCGTCTTCTGTGCCATGTTTTACGGGGATCTTGCAGAGGAGGAGTCCGAAATCCATATCCCAGACGTGGAACCTGCTGCTTTTCTAATTCTGCTGAATTACATGTACAGTGATGCGATAGACCTGGAGGCGGACACCGTGCTGGCTACCCTGTACGCTGCCAAGAAGTACATTGTACCAGCCCTGGCCAAGGCCTGCGTCACCTTCCTGGAGACCAGCCTGGAGGCCAAGAACGCCTGTGTGCTGCTGTCCCAGAGCCGTCTGTTTGAGGAGCCTGAGCTGACACAGCGCTGCTGGGAGGTGATTGACGCCCAGGCCGAGCTGGCCCTGGGCTCCGAGGGCTTCTGTGAGATCGACCTGCAGACCCTGAAGATCATCCTGCAGAGAGAGACTCTCAACACCAAGGAGGTGGTGGTCTTTGATGCCATGATGAGCTGGGCCACAGCTGAGTGTAAGAGGCAAGGACTGAGGGCAACCACCCACAACAAGAGATCTGTCCTGGGCAAGGCACTCTACCTGGTGCGCATCCCCACTATGACACTGGAGGAGTTTGCTGATGGGGCGGCCCAGTCAGACATCTTGACACTGGAGGAGACGCATGACATTTTCCTGTGGTACACAGCGGCCACCAAGCCCAAACTGGACTTCCCACTGGCACAGAGGCAGGGCCTGGCGCCCCAGAGGTGCCACCGCTTCCAGTCGTCAGCCTACCGGAGCAACCAGTGGCGCTACAGGGGCCGCTGTGACAGCATCCAGTTTGCAGTGGACAAGCGGATCTTTATCGCTGGACTGGGTCTGTACGGGTCAAGTGGCGGAAAGGCTGAGTACAGTGTCAAGATTGAACTGAAGCGGCAAGGGGTGACCCTAGCACAGAACCTGACCAAGTTTGTGTCGGACGGATCAAGCAGTACATTTTCTGTGTGGTTTGAACACCCAGTTCAAGTGGAGCAGGATGCCTTTTATACGGTGAGTGTCGTGCTGGACGGGAATGAGCTGAGCTATTTTGGCCAGGAGGGCATGACGGAGGTGCAGTGTGGAAAAGTGACTTTTCAGTTCCAGTGCTCCTCGGACAGTACCAACGGGACTGGGGTGCAGGGGGGACAGATCCCGGAGCTGGTGTTCTATGCATAA

Function

NR:

description
BTB/POZ domain-containing protein 6-B-like

GO: NA

KEGG:

id description
K10478 BTBD3_6; BTB/POZ domain-containing protein 3/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574240.2 False 2511 mRNA 0.48 4 39689558 39692818
XM_021574241.2 True 1916 mRNA 0.52 5 39689926 39692818

Neighbor

gene id symbol gene type direction distance location
LOC110497819 bag5 coding downstream 83715 39590341 ~ 39605843 (-)
ckba ckb coding downstream 128358 39550499 ~ 39561200 (-)
si:dkey-196h17.9 LOC106586342 coding downstream 186258 39498620 ~ 39503300 (-)
si:dkey-229e3.2 LOC106599591 coding downstream 318927 39365257 ~ 39370631 (-)
LOC110497802 LOC105031663 coding downstream 403791 39278696 ~ 39285767 (-)
syne2b LOC106599102 coding upstream 262308 39955126 ~ 40097979 (-)
kcnh5b LOC106599078 coding upstream 418898 40111716 ~ 40194268 (-)
LOC110497830 LOC106599033 coding upstream 508938 40201756 ~ 40235731 (-)
LOC118941474 NA coding upstream 533147 40225965 ~ 40229000 (-)
LOC110497831 sgpp1 coding upstream 601749 40294567 ~ 40312562 (-)
G1623181 NA non-coding downstream 7562 39681050 ~ 39681996 (-)
G1623175 NA non-coding downstream 13788 39675439 ~ 39681529 (-)
G1623154 NA non-coding downstream 18896 39667555 ~ 39670662 (-)
G1623128 NA non-coding downstream 32913 39654669 ~ 39656645 (-)
G1623129 NA non-coding downstream 37351 39651731 ~ 39652207 (-)
G1623215 NA non-coding upstream 47323 39740141 ~ 39740439 (-)
G1623217 NA non-coding upstream 49220 39742038 ~ 39742265 (-)
G1623221 NA non-coding upstream 52630 39745448 ~ 39745799 (-)
G1623316 NA non-coding upstream 198942 39891760 ~ 39959508 (-)
G1623301 NA non-coding upstream 199741 39892559 ~ 39948899 (-)
G1623037 LOC106586451 other downstream 277774 39396068 ~ 39411784 (-)
G1622757 LOC106600509 other downstream 730584 38957024 ~ 38958974 (-)
LOC110497753 spred1 other downstream 2920859 36654523 ~ 36840800 (-)
LOC110497838 trmt5 other upstream 774526 40467344 ~ 40547622 (-)
G1624738 NA other upstream 936947 40629765 ~ 40630208 (-)
G1624737 NA other upstream 937760 40630578 ~ 40631738 (-)
LOC110498350 NA other upstream 1002657 40689096 ~ 40699267 (-)
LOC110497863 LOC106596965 other upstream 1376945 41052866 ~ 41080347 (-)

Expression


Co-expression Network