Gene
RNA
| Item | Value |
|---|---|
| gene id | syne2b |
| gene name | LOC106599102 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 39955126 ~ 40097979 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: nesprin-2-like isoform X9 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036954789.1 | False | 32017 | mRNA | 0.55 | 130 | 39955126 | 40084178 |
| XM_036954786.1 | False | 32045 | mRNA | 0.55 | 131 | 39955126 | 40097978 |
| XM_036954787.1 | False | 32042 | mRNA | 0.55 | 131 | 39955126 | 40097978 |
| XM_036954788.1 | False | 32030 | mRNA | 0.55 | 131 | 39955126 | 40097978 |
| XM_036954790.1 | False | 31976 | mRNA | 0.55 | 130 | 39955126 | 40097978 |
| XM_036954791.1 | False | 31973 | mRNA | 0.55 | 132 | 39955126 | 40097978 |
| XM_036954792.1 | False | 31967 | mRNA | 0.55 | 130 | 39955126 | 40097978 |
| XM_036954793.1 | False | 31943 | mRNA | 0.55 | 130 | 39955126 | 40097978 |
| XM_036954794.1 | False | 31919 | mRNA | 0.55 | 130 | 39955126 | 40097978 |
| XM_036954795.1 | False | 31877 | mRNA | 0.55 | 129 | 39955126 | 40097978 |
| XM_036954796.1 | False | 31715 | mRNA | 0.55 | 131 | 39955126 | 40097978 |
| XM_036954797.1 | False | 31385 | mRNA | 0.55 | 130 | 39955126 | 40097978 |
| XR_005037720.1 | False | 28295 | mRNA | 0.56 | 116 | 39970060 | 40097978 |
| XM_036954798.1 | True | 24904 | mRNA | 0.56 | 95 | 39994673 | 40097979 |
39,820,000
39,840,000
39,860,000
39,880,000
39,900,000
39,920,000
39,940,000
39,960,000
39,980,000
40,000,000
40,020,000
40,040,000
40,060,000
40,080,000
40,100,000
NC_048583.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110497823 | LOC106599217 | coding | downstream | 262308 | 39689558 ~ 39692818 (-) |
| LOC110497819 | bag5 | coding | downstream | 349283 | 39590341 ~ 39605843 (-) |
| ckba | ckb | coding | downstream | 393926 | 39550499 ~ 39561200 (-) |
| si:dkey-196h17.9 | LOC106586342 | coding | downstream | 451826 | 39498620 ~ 39503300 (-) |
| si:dkey-229e3.2 | LOC106599591 | coding | downstream | 584495 | 39365257 ~ 39370631 (-) |
| kcnh5b | LOC106599078 | coding | upstream | 13737 | 40111716 ~ 40194268 (-) |
| LOC110497830 | LOC106599033 | coding | upstream | 103777 | 40201756 ~ 40235731 (-) |
| LOC118941474 | NA | coding | upstream | 127986 | 40225965 ~ 40229000 (-) |
| LOC110497831 | sgpp1 | coding | upstream | 196588 | 40294567 ~ 40312562 (-) |
| LOC110497832 | NA | coding | upstream | 214997 | 40312976 ~ 40316713 (-) |
| G1623301 | NA | non-coding | downstream | 6227 | 39892559 ~ 39948899 (-) |
| G1623334 | erb2 | non-coding | downstream | 11632 | 39919331 ~ 39943494 (-) |
| G1623221 | NA | non-coding | downstream | 209327 | 39745448 ~ 39745799 (-) |
| G1623217 | NA | non-coding | downstream | 212861 | 39742038 ~ 39742265 (-) |
| G1623215 | NA | non-coding | downstream | 214687 | 39740141 ~ 39740439 (-) |
| G1623414 | NA | non-coding | upstream | 52617 | 40150596 ~ 40150805 (-) |
| G1623418 | NA | non-coding | upstream | 54718 | 40152697 ~ 40152977 (-) |
| G1623420 | NA | non-coding | upstream | 56667 | 40154646 ~ 40154902 (-) |
| G1623422 | NA | non-coding | upstream | 58010 | 40155989 ~ 40156228 (-) |
| G1623424 | NA | non-coding | upstream | 61427 | 40159406 ~ 40159827 (-) |
| G1623175 | NA | other | downstream | 273597 | 39675439 ~ 39681529 (-) |
| G1623037 | LOC106586451 | other | downstream | 543342 | 39396068 ~ 39411784 (-) |
| G1622757 | LOC106600509 | other | downstream | 996152 | 38957024 ~ 38958974 (-) |
| LOC110497753 | spred1 | other | downstream | 3186427 | 36654523 ~ 36840800 (-) |
| LOC110497838 | trmt5 | other | upstream | 369365 | 40467344 ~ 40547622 (-) |
| G1624738 | NA | other | upstream | 531786 | 40629765 ~ 40630208 (-) |
| G1624737 | NA | other | upstream | 532599 | 40630578 ~ 40631738 (-) |
| LOC110498350 | NA | other | upstream | 597496 | 40689096 ~ 40699267 (-) |
| LOC110497863 | LOC106596965 | other | upstream | 971784 | 41052866 ~ 41080347 (-) |
