Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110497832 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 40312976 ~ 40316713 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: uncharacterized protein LOC105895945 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_002469707.2 | False | 2703 | mRNA | 0.42 | 4 | 40312976 | 40316713 |
| TU1859055 | True | 1814 | lncRNA | 0.46 | 4 | 40313828 | 40316676 |
40,308,000
40,309,000
40,310,000
40,311,000
40,312,000
40,313,000
40,314,000
40,315,000
40,316,000
40,317,000
40,318,000
40,319,000
NC_048583.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110497831 | sgpp1 | coding | downstream | 414 | 40294567 ~ 40312562 (-) |
| LOC110497830 | LOC106599033 | coding | downstream | 77245 | 40201756 ~ 40235731 (-) |
| LOC118941474 | NA | coding | downstream | 83976 | 40225965 ~ 40229000 (-) |
| kcnh5b | LOC106599078 | coding | downstream | 118708 | 40111716 ~ 40194268 (-) |
| syne2b | LOC106599102 | coding | downstream | 214997 | 39955126 ~ 40097979 (-) |
| syt16 | syt16 | coding | upstream | 591 | 40317304 ~ 40341212 (-) |
| snapc1b | LOC106598946 | coding | upstream | 25643 | 40342356 ~ 40349828 (-) |
| hif1a | hif-1a | coding | upstream | 37163 | 40353876 ~ 40375782 (-) |
| LOC110497835 | LOC106598906 | coding | upstream | 65871 | 40382584 ~ 40416025 (-) |
| LOC110497839 | NA | coding | upstream | 113507 | 40430220 ~ 40465948 (-) |
| G1623572 | NA | non-coding | downstream | 29024 | 40282939 ~ 40283952 (-) |
| G1623540 | NA | non-coding | downstream | 42344 | 40270351 ~ 40270632 (-) |
| G1623534 | NA | non-coding | downstream | 44686 | 40268039 ~ 40268290 (-) |
| G1623533 | NA | non-coding | downstream | 45753 | 40266952 ~ 40267223 (-) |
| G1623454 | NA | non-coding | downstream | 113547 | 40197636 ~ 40199429 (-) |
| G1624649 | NA | non-coding | upstream | 72615 | 40389328 ~ 40390006 (-) |
| LOC110497838 | trmt5 | non-coding | upstream | 151557 | 40467344 ~ 40547622 (-) |
| G1624775 | NA | non-coding | upstream | 267130 | 40583843 ~ 40584868 (-) |
| G1624780 | NA | non-coding | upstream | 277330 | 40594043 ~ 40594264 (-) |
| G1623175 | NA | other | downstream | 631447 | 39675439 ~ 39681529 (-) |
| G1623037 | LOC106586451 | other | downstream | 901192 | 39396068 ~ 39411784 (-) |
| si:dkey-229e3.2 | LOC106599591 | other | downstream | 942710 | 39365257 ~ 39370631 (-) |
| G1622757 | LOC106600509 | other | downstream | 1354002 | 38957024 ~ 38958974 (-) |
| LOC110497753 | spred1 | other | downstream | 3544277 | 36654523 ~ 36840800 (-) |
| G1624738 | NA | other | upstream | 313052 | 40629765 ~ 40630208 (-) |
| G1624737 | NA | other | upstream | 313865 | 40630578 ~ 40631738 (-) |
| LOC110498350 | NA | other | upstream | 378762 | 40689096 ~ 40699267 (-) |
| LOC110497863 | LOC106596965 | other | upstream | 753050 | 41052866 ~ 41080347 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| bowfin (Amia calva) | AMCG00000569 | NA | coding | CM030141.1 | CM030141.1 | 18678797 ~ 18690095 (+) |
