hif1a (hif-1a)


Basic Information

Item Value
gene id hif1a
gene name hif-1a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 40353876 ~ 40375782 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124288.1
GCAACCTCTCCAGCGTGGCACCTCATGCCATTTCGAAGGAATTAAAACACATTCTTCTGCACTCATGTTTTGACTTTCCGCGATGGAGGCTTGACCTCTCCGAACTGCATTGATCAACGACACTTAAGGAAAACATAATTTACGATTTAATTGTTTTAATAGCTACGTGGATTTTTTTCGCTCATTTCCGTACGGGCCCGACAAACACAGTttgatagctaacgttagctaacgtcaCAGTACAGTAGCTACTGATTGTTCGAGTTTGTGCTCAGAAAGTCGGTTGTCCTCATCCTGAAATGGACACAGGAGTTGTCCCCGAAAAGAAAAGCAGGGTGAGCTCGGACCGGAGGAAGGAGAAGTCCCGGGATGCGGCGCGATGCAGGAGGGGGAAGGAATCTGAGGTGTTCTACGAGCTGGCCCAGGAGCTGCCCCTGCCCCACAGCGTCACCTCCAACCTGGACAAGGCCTCCATCATGAGACTGGCCATCAGTTACTTGCACATGAGGAATCTGCTGAGCACAGACaatgaggaggagcaggaggagagtgAAATGGACTCCCAGCTGAATGGATCCTATCTGAAGGCTATAGAGGGCTTCCTCATGGTGCTGTCTGAGGACGGGGACATGATTTATCTCTCTGAGAATGTCAACAAGTGCTTGGGTCTGGCACAGATTGACCTGACAGGACTTAGTGTGTTTGAGTACACACACCCCTGTGACCATGAGGAGCTGAGAGAGATGCTGGTACACAGAACAGGGACCTCTAAAAAGTCCAAGGAACCAAACACAGAACGCAGCTTCTTCTTGCGGATGAAATGTACCCTCACCAACAGGGGGCGCACTGTCAATGTCAAATCAGCcacctggaaggttctccactgCTCAGGCCATGTGCGGGTCCATGAATCCCCAGCTGAGCAGATCCCCGGTGGGCACAAGGAGCCGTCCGTCCCCTACCTGGTGCTGGTCTGTGACCCCATCCCCCACCCCTCCAACATCGAGGCGCCGCTGGACACCAAGACTTTCCTCAGCCGCCACACACTGGACATGAAGTTCACCTACTGTGATGAGAGGATCACTGAGCTGATGGGTTATGATCCAGAGGACCTGTTAAATCGCTCTGTGTATGAGTACTACCACGCCCTGGACTCAGACCACCTCATGAAGACCCATCACAACTTGTTTGCGAAGGGTCAGGTGAGCACAGGCCAGTACCGCATGCTGGCTAAGAGAGGAGGCTTTGTGTGGGTGGAGACTCAGGCCACTGTTATCTACAACAACAAGAACTCCCAGCcccagtgtgttgtgtgtgtcaacTATGTGCTCAGTGGCATTGAGGAGGAGAAGATGATGCTGTCTCTGGAGCAGACGGAGGATATGAGGCCTGTGAagaaggagctggaggaggaggagagctctGAGCCAGAGGTGTCCCCTGTGCTCCTGAAGGAGGAGAAGAGCCCAGAGCTGGATGTGATCAAGCTGTTCACCCGGGCGGTGGAGACCCAGCCCCTGTCCAGCCTGTATGACCGACTGAAGGAGGAACCAGAGGCCCTCACCCTTCTGGCCCCGGCCGCTGGAGACACCATCATCTCCCTGGACTTCAGCAGCCCCGACTCTGACATCCTGCAGAAGGAGGTGCCTCTCTACAAGGATGTGATGCTGCCCTCCACCAGTGACAAGCTGGCCCTGCCACTCTCTCTGCTGCCCCCCAGTGATCAGCACCTGGTCCCCAACACCTCAGTGGACACCACTGAGGTGTCCACTGGTCCAGACTCCTCCAGCACCCCAGGCAGCCACAGCTTCACTGAGCCTGACAGCCCATTGGACTTCTGTTTCCCAATGGAGTCTGACATCAGTGCTGAGTTTAAACTGGACATGGTGGAAAGACTGTTTGCCATCGACCCAGAGCCAAAGACTCCTTTCACCTTACAGGCCATGGAGGACCTGGACCTGGAGATGTTGGCTCCGTACATCCCCATGGATGATGACTTCCAGCTGCGCACCCTGTCCCCAGAGGAGCCTCTGTCTTGTGGCCCAGCCCAACCCCTAGAGTGCTCTTCTCTGTGCTCTTCTGTGCGCCTCACCCAGGAGGTCCACAGCTACCCTGGCTCCCCCTTCAATGCCCCAGGCAGCCTGACAGCTTCCCCAGCCCTGGCAGCGTCCCCAGCCCTGGCAGCCCCGGAGCCAGCAGATAGCCCTTGCCCTGCTTCCTTACTCACCAAGACGGTGCCTCAGATGGACATGGAGATCTCCCTTAGGTCACTGGCCTCCCAGAATGCACAGCGCAAGAGGAAGATGTCTCTGTCTCAGGCTGTCGGAATAGGGGGATTGCTCCAAGACCATCCTGGTCCAGGTAAAAAGCTCAAAGTATCTGAGCTGAGCCACGCTGATGCTCCCTCCAACAGGACCATACTGCTCCTGCCTACAGACCTGGCAAGCCGTTTGCTTGGCATCTCATCGGAGGGCAGCGGCTCACCCTTCACCCTTCCTCAGCTGACCCGATATGACTGTGAGGTCAACGCCCCCGTGGGGGGTCGCCAGCTCCTGCTGCAGGGCGAGGAGCTCCTGAGTGCCCTGGACCAAGTCAACTGAGTCAACGCTTAGCCTGCCCCCTGCTGGACCAGACCAGACACTACAACTTCTCCTCATTCACTCTGTCCCCACCCGCTGCCCCTTTATTTGTCTCTCTGTATCAGTGATCTTATAGTTTGGCTGCTGTCTGCATCCACCAAGTGATATCTGCAGCGTTAGAGTTAGTGttggggatgttgtagtgtttgCAGGTAGAGGCACCTAATTGTTTCTTTCTCGGGAGTCTCTGACAGCAAACGTATGGCACCTCCATGGATGGCTCTGTTGTATCAGGTCTCCAGGAAAACCGGCGGTGCTACTGCCAGCAGTGTATTGTAAGCTTCAGTCGCACAATTTATATTTtcttaaaaagaaaaaaagattACCAGCAATCTATATTAAGCCTTTTAAAAAGTAGTTTTAATGGAATTTCAAccattttattttactttttccTCTGCATTCTTATGTTGTGTATAACAATACTATTTGGTCCAGAAGGTATTTTTGAATGTTATATCCCCATTACTGGTTACCAGTATTTTAGGCAAATGTGTAGTCATTCAGTACTTGTCACTTTATTACTttactactgtatgtgtgtgtttgttactgTGCATAGACCAGGGGAACATTCAGAGATTGCTTAAATGCCTTGTCATGAATAATAAATACATGTGCGCGGTATAATTAGATCTAAATCCGTTTGTTTTTAAGATTGGAGGATTGGCCCCTCAGTTTGATCATGTAATCAATACATTTTTAGTTGTCAGACCCAAATGGTTTATTTAGATTGAAGTAACATGTACTTCCTTAGCACCATCATATGATCATATTTTACCAGTATAATTCTCATTTATTAGTAGCAAGTGTTACTCTTGCATACCTGTTTTCTCAGTTGTCTGTTTTATGGTATTGGTCCACATACTGCAGTTTTGGGTTTCTTTCATGCTTCCTGTTGCTGTCTAACATAAAATTACTCCCAAAAAATTA

Function

NR:

description
hypoxia-inducible factor 1-alpha

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K08268 HIF1A; hypoxia-inducible factor 1 alpha

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124288.1 True 3572 mRNA 0.51 14 40353876 40375782

Neighbor

gene id symbol gene type direction distance location
snapc1b LOC106598946 coding downstream 4048 40342356 ~ 40349828 (-)
syt16 syt16 coding downstream 12664 40317304 ~ 40341212 (-)
LOC110497832 NA coding downstream 37163 40312976 ~ 40316713 (-)
LOC110497831 sgpp1 coding downstream 41314 40294567 ~ 40312562 (-)
LOC110497830 LOC106599033 coding downstream 118145 40201756 ~ 40235731 (-)
LOC110497835 LOC106598906 coding upstream 6802 40382584 ~ 40416025 (-)
LOC110497839 NA coding upstream 54438 40430220 ~ 40465948 (-)
LOC110497838 trmt5 coding upstream 92472 40467344 ~ 40547622 (-)
LOC110497843 LOC106598791 coding upstream 210146 40585928 ~ 40588482 (-)
LOC110497844 LOC106598722 coding upstream 243670 40619452 ~ 40643379 (-)
G1623572 NA non-coding downstream 69924 40282939 ~ 40283952 (-)
G1623540 NA non-coding downstream 83244 40270351 ~ 40270632 (-)
G1623534 NA non-coding downstream 85586 40268039 ~ 40268290 (-)
G1623533 NA non-coding downstream 86653 40266952 ~ 40267223 (-)
G1624649 NA non-coding upstream 13546 40389328 ~ 40390006 (-)
G1624775 NA non-coding upstream 208061 40583843 ~ 40584868 (-)
G1624780 NA non-coding upstream 218261 40594043 ~ 40594264 (-)
G1623175 NA other downstream 672347 39675439 ~ 39681529 (-)
G1623037 LOC106586451 other downstream 942092 39396068 ~ 39411784 (-)
si:dkey-229e3.2 LOC106599591 other downstream 983610 39365257 ~ 39370631 (-)
G1622757 LOC106600509 other downstream 1394902 38957024 ~ 38958974 (-)
LOC110497753 spred1 other downstream 3585177 36654523 ~ 36840800 (-)
G1624738 NA other upstream 253983 40629765 ~ 40630208 (-)
G1624737 NA other upstream 254796 40630578 ~ 40631738 (-)
LOC110498350 NA other upstream 319693 40689096 ~ 40699267 (-)
LOC110497863 LOC106596965 other upstream 693981 41052866 ~ 41080347 (-)

Expression


Co-expression Network