LOC110497835 (LOC106598906)


Basic Information

Item Value
gene id LOC110497835
gene name LOC106598906
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 40382584 ~ 40416025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954802.1
GCACAGCGGTGCACCATGGTAGTTATAGTCGTAATGTACTTTCTAACAGTATTATATTAATCCTTGACAGTAACCGAGGAGACTACAATATCTAACATACTGGCAAGACCTTTTACAGTTGCATGCAGGTAGCAATCAAATTTGTCAGAACAAAATGTAAACACATTGAGAAAGAAGAAACTTTACAGGGAAATCATTGTTGCTACTTCTGGTAGGCTACTTCCTTTTTACGGAACttctttgaagatcttctttgaAGAAGGTCGTTCTTCAGAACGTGCGAGCTTTCTGTTTTAGTTCACTTCAGCTGGGGTGTTTCGGAAGGCAAAGACACACATTTGACCAGGAAAGTGCTCAGGACCAAGGGTCAAGAGCACTGTGAGAACGCATCACCTGAAGATGGCAAATGACAAGAGCAACGCGTTCGAATCGCTTTAGGACGCAACATTGGACTCCAATTCAGTCAACGATATTGATGTATATTCTTTAGAAATTATATCAGCAAATAAGAATGCTTTGCATGCATGTTAAATCCATAGCGTATTTTTAATTTTAGTTTATATTGTTTTTACTTTTTTCTTTAGAGGAACAATATCATGAAGTTTAACGGGTATCTAAAGGTTAGAATTGGTGAGGCGTTGGACCTCAAACCAACTACTTTTTCCCTTCGCCATTCTACAATGTtcaacaaaacagctcccacttTGGACCCTTACATTGTGATAAAGGTGGACGAGTACAAAATTGGACAGACGCATACAAAGCAGAAAACCAACATGCCAACTTACAACGAAGAGTTCTGCCTCAATGTCAACGACGGCAAGCATATGGAGTTGGCTGTATTTCACGATGCGCCCATAGGGTATGACGATTTTGTTGCTAACTGCACATTTCAATTTGAGGACCTGATGAAAACCTTGAACACAGAAGAGACTTTTGAAGGATGGgTGGACCTGGAGCCAGAGGGCAAGGTGTTCATCCTCATAACACTCAATGGCTCCTTCATTGATGATGACGCCACGGGGAAGGCCAAGGTGTTCAAGCAGTTCAACAGGAAGAGGCAAGGGGCCGTGAAACGCAAGATCCATCAGGTCAACGGACACAAGTTCATGAGCACCTTCCTACGACAGCCCACCTTCTGCTTCCACTGCAAAGAGTTCATCTGGGGTGTGTTTGGGAAACAGGGCTACCAATGCCAAGTATGCACGTGTGTGGTTCACAAGCGATGTCATCAGTTGGTTGTCACGGTGTGTCCACGTATGAAGAAGCCTGTCAAGGAGCCGACCACCAACCAAGGCTTCAGTATCAACGTCCCTCACAAGTTCAACATCCACAACTTTAAGGCTCCCACCTTCTGTGACCACTGTGGTTCTCTACTGTGGGGCCTTGTCAGACAGGGTCTACACTGCAAGAGCTGTAAGATGAACGTGCACATCCGCTGTAAGGGAAACGTAGCACCCAGCTGTGGGGTCAACAGTGTGGAGCTGGCCAACAAGTTGGCAGAGATGGGCCTGCAGGCCGGGGGGTTCTCCAAACGCAATTCGCTGTCCACTGGAGTGCAGGGCCAGGAGCGGGCCCTcagtgtgaggagagagagtgaaacccCTCAGCAGCAGACCAGACATCTGGGCATCTCTGACTTCACCTTCCTACAGGTGCTGGGGAAGGGCAGCTTCGGCAAGGTGATGCTGGCTCGGTTGAACAGCGGTGAGCGGGTGTTTGCAGTGAAGGTGCTGAAAAAGGACATAATTCTGCAGGACGATGATGTCGAGTGCACCATGACAGAGAAGAGAGTGCTGTCACTGGCCAGCTCCCACCCGTACCTCACTCAGCTCTACTGCTGCTTTCAGACACCGGACCGCCTGTTCTTTGTGATGGAGTTTGTCAATGGGGGCGACCTCATGTTCCACATCCAGAAGTCCAGAAAGTTTGAGGAGTGCCGCGCTCGCTTCTACACCGCCGAGATCACCTCTGCACTAAGGTTCCTGCACAGCAAGGGCATCGTCTACAGGGATCTGAAGCTGGACAATGTGCTCCTTGATAAGGACGGACACTGTAAGCTGGCTGATTTCGGCATGTGCAAGGAGGGCATGTTTGAAGGTGTGGCCACAGGCACCTTCTGCGGGACTCCTGACTACATCGCCCCAGAGATCCTTCAGGAGATGCAGTACGGGCCGTCTGTGGACTGGTGGTCTCTCGGCGTGCTGCTCTATGAGATGCTGTCTGGCCACGCCCCCTTTGAGGCAGAGAACGAGGACGACCTGTTTGAGTCCATCCTGAATGAGGAGATCAGCTATGCATCCTGGCTGAGTGCTGAGGCAGTCAATATCCTGAAAGCTTTCCTGACTAAGAACCCTGCCCGGCGTCTAGGCTGCGTGGCGGCGGAGGGTGGGGAGAACGCTGTGACTAACCACGTCTTCTTCACTGGAATCAACTGGGACAAGCTGAACTGCAGGGAGCAGGAGCCGCCCTTCAAACCCCGCATCAAAACTGCAGAGGACGTGAACAACTTTGACCCAGACTTCACCCAGGAGGAGCCCACCCTGACGCCCATTGAGgatctccttccctctgtcaacCAGGACGAGTTCCACAACTtctccttcacctctcctgagCTGCTGGACGACTAGGAGGCCCTGTGTGACCCCCCTGCACCTCTAGACGACTGGGGCCATACAGGATCACAATGTGTCTAGCTCTGGCTAGTTCACTGGCACAGTTGACTGTTTGGCACTGCCTTAGCCTGTATCTCTAATTTTGAAAGGCAGTTTAGACTCAGCCCTCGTCACTGTGGTATATGACCGTCTGGTtccctggagggagggagggagggagggagggagggaggg

Function

NR:

description
protein kinase C eta type-like

GO: NA

KEGG:

id description
K18051 PRKCH; novel protein kinase C eta type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954802.1 True 2852 mRNA 0.50 14 40382584 40416025

Neighbor

gene id symbol gene type direction distance location
hif1a hif-1a coding downstream 6802 40353876 ~ 40375782 (-)
snapc1b LOC106598946 coding downstream 32756 40342356 ~ 40349828 (-)
syt16 syt16 coding downstream 41372 40317304 ~ 40341212 (-)
LOC110497832 NA coding downstream 65871 40312976 ~ 40316713 (-)
LOC110497831 sgpp1 coding downstream 70022 40294567 ~ 40312562 (-)
LOC110497839 NA coding upstream 14195 40430220 ~ 40465948 (-)
LOC110497838 trmt5 coding upstream 52229 40467344 ~ 40547622 (-)
LOC110497843 LOC106598791 coding upstream 169903 40585928 ~ 40588482 (-)
LOC110497844 LOC106598722 coding upstream 203427 40619452 ~ 40643379 (-)
LOC110497845 LOC106598670 coding upstream 250661 40666686 ~ 40674956 (-)
G1623572 NA non-coding downstream 98632 40282939 ~ 40283952 (-)
G1623540 NA non-coding downstream 111952 40270351 ~ 40270632 (-)
G1623534 NA non-coding downstream 114294 40268039 ~ 40268290 (-)
G1623533 NA non-coding downstream 115361 40266952 ~ 40267223 (-)
G1624775 NA non-coding upstream 167818 40583843 ~ 40584868 (-)
G1624780 NA non-coding upstream 178018 40594043 ~ 40594264 (-)
G1624781 NA non-coding upstream 178807 40594832 ~ 40595089 (-)
G1623175 NA other downstream 701055 39675439 ~ 39681529 (-)
G1623037 LOC106586451 other downstream 970800 39396068 ~ 39411784 (-)
si:dkey-229e3.2 LOC106599591 other downstream 1012318 39365257 ~ 39370631 (-)
G1622757 LOC106600509 other downstream 1423610 38957024 ~ 38958974 (-)
LOC110497753 spred1 other downstream 3613885 36654523 ~ 36840800 (-)
G1624738 NA other upstream 213740 40629765 ~ 40630208 (-)
G1624737 NA other upstream 214553 40630578 ~ 40631738 (-)
LOC110498350 NA other upstream 279450 40689096 ~ 40699267 (-)
LOC110497863 LOC106596965 other upstream 653738 41052866 ~ 41080347 (-)

Expression


Co-expression Network