LOC110497840 (LOC106598809)


Basic Information

Item Value
gene id LOC110497840
gene name LOC106598809
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 40544916 ~ 40553190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574265.2
AGTAAAAGTCACGTTGGAACGAAAGGGGAGCGCTATCCACTTACAGCTGCTGCCAGATATTCGATCGCATTCGCATGGCGAGGGGGTAACCTGATCGGCTGAAGGCTTGCCGGAACCAGGGAGGAGTGACTTACCAGGAAAGGCTTGAAAATGTCTTCTTCTTCAGGAGAAGTCACAATTTCAAATGACATTCAGAAGGAAAATGTGAAGACGGACAGGCGAGAGTGTATCAAGCTTCTGGCGCTCGACACCGCGGAGTTGTCTATGGAGCGCGCAACTTCGAACACTGATGCGGTCCACAGTGAACTTCTGGTGAGCGCGACTTCTTCCCTGGCATTCTCCCCGGAGCAAGTGGCGTGCGTCTGCGAGGCTCTGCAGCAGGGAGGCAATGTGGACCGGCTTGCCAGGTTTTTATGGTCCTTGCCACAGAGTGACCTGCTACGCGGCAACGAAAGCATTCTGAAAGCTCAAGCTCTTGTCGCTTTTCATCAGGCTCGGTACCAGGAGCTCTACAGTATTTTGGAGAACCACAGCTTCAGTCCGTCCAACCACTCCTCGCTGCAAGACCTATGGTACAAGGCACGGTATACCGAGGCAGAGAAAGCGCGTGGGAGACCCCTGGGCGCCGTGGATAAATATCGCCTGCGGAGAAAGTACCCACTCCCCCGGACTATCTGGGACGGGGAAGAGACAGTATACTGCTTCAAAGAGAGGTCCCGCAACGCGCTGAAGGATCTCTACAAGCAGAATAGATATCCCTCTCCAGCCGAGAAAAGAAACCTCGCTAAAATCACGGGACTCTCTTTGACGCAGGTCAGCAACTGGTTCAAAaacaggagacagagggacagaaacCCATCCGAAGCGCAATCAAAAAGTGAATCTGATGGCAACCACAGCACAGAGGATGAGTCTAGTAAAGGACAGGAAGAGCtttctccactccccctctccaatTCATCTGACGGGGCGATGACCCATGGGGCCCTCCCCCTGCAGACAGGGTCTCTGGACAGTGGGTTGGTCATCAAACAGATTGGGGACATCAAGATGCCCCCTGGATCCAACAGTGGGGTTCTCTTTAACGGGAACCTAGTGACCAGTAACCCCTCCACTGTCTTCCATAATGGTGGCTCGTCTTACCTCCAGGCCCCCAGCAACATCCTGTTCAACGGGCTCAACCTGGGTGTCCAGCCCCTGGCCTTCAACCCCCAGCGGCTCTCTGGGGGGGTCTTGATGGGGGGCTCTGGTGTGGACATGCAGATGCAGGCAGGCCAGGAGAAGGGGCTGGGCAGCTCCAGCGTGGACTATGCCTCCTACTCTGGCTGTGTGAACGGGGCAGAGGTGAAACTGGAGGGGGTTCACGGCATGGCAGCTCAAAATGCCGGCTCGTCCGTCCTCACTTTCAGTTCGTCCTCAGGGACGCTCCAGCTGGGCGGTTACAGTCAGGTCCATGTGCACAGCGGCATATCTGACGGCAACAGGGCATCTCTGCTCAACAGCAATGTAGGTCTTCCTCCTCTGCAGCTCCCCTCTGGCTCCTCCACCTCAGCACTCTCACAAGGTACAATCCAAGTGAACAATGTAGCAGTCAGTTCTTCCAGTGaggactcctaccaccaccagcacCATCAGGACAAGCTGGCCATGGCCCCCATGCACCCCAGCACAGTGCTGTACAGCATGGGCAACACTGGACAGACCTCCATCAAGAAGGAGCCCCTGGAGGGAGGCGGGGGCGGTGGGGTATACTCCTACCATCATGGCCTTCACCTGGACACCAGTGGGCAGCTCAGTTACTCCTCAGCCCCCCTAAACTCAGAGGAGGTCCCCTCTAGCCAGggccccaccccctcctctgaTGTAACCATGGTCAGCTCCTCCAGTCCAGAGCCTGAGGTCTACACCACCCTCACCGTCAGCACCCCTCTGATGGCCCAAACAGACCCGAACGGACACCACCTCCAGCCTGAGTACCTCAGGGGCCACAACCCACAACCTGTCCCCTCCTCACACCTCCTGGGCCCTGGCATGAACAACAACTACATGTCTGTGTCAGAGAGTAAGGTGGACGCAAGTGGCGATGGGGTGAATGAGATGGTGCGGGTCATGTGTGGGGAGATGGAGCcgggggaggagaaggagctgGCCAAATTACAGACAGTGCAGATGGACGAGGATATGGCTGACCTTTAACCTGTAACCTATGATTTTTCATAAGCACTCATATCTGCCCAAGCAGTGATGTGGTGAATATTTTtacttttttgtgtgtttttttaccattcatttctTCTAAGTGTTAAATTATTTGCTAATGTTGTGTTCATTTTACCTTACACTGCACTCTATTCAGATGCAAACCCCTTGGATTGGCACTATGAAGTCATCCTAATGAATTATTTTAAAACCCCCTGATTCCTCTATGCATCACAGAAAGTCAGAACTAGAAGTCCCTTGCATGCATATGAACCACATTCTAAGTGTGCATTTTTTATATACAACACCTGCTACTTCCCATTGAGTGGACTTGATCCACGGAAGCAGGTGTTGGAATGGCCCTGGTCATGTGACCAGGATGTTTCTCCAAACTAAATGCGTCATCTGGGTCAACTCAAAAAGGTCCTTCAGTAGGGGGAGGGGAGCGTCTCTGTGAAAATGTTCACTAAACCACTACAATTGCTGCACTGAAAACCACACATAAAACCACATATGAATAACAGGACCATCACTGTGCACAGCAGTTGCTGATTTATGCAATTTAGACCTCTTCAAATTCTCAGAAAGTCATTCAAGTCTACCATCCTCCATAGTACATTCATCATTTGTTACATATCATGTGGGCTGAGGATGATTCATCATATTTATGGCATGGTTTCTGTTCGGGGGACTTAAGAAGAAATGAATGTGCCTTTCTGCCCCGTAGAATGTCAGTCTGCACTGACCTCTCCTAATTTGCACTAGCATCAAAACACTATAACAGAAGATTGTAGCTTCAAAGAACCTACCTTTCCCTCTGGACTGATCAAACCATAGCAAATCTATACTGTGAAAACATATTTCAAGCTTCATCCATtattggagacagagagaggttataAAGGGGTTGTGACACAGTCCGTATCTATTTGAACATAGTAAGACCACTATATGCTGTTTGTTCATTTTGGCAACAGTATGTCCCATCATTGATTTTGAAATGTCTCCTCAAACTGTCTCTGCAAAAATATACATCAGTTATATTTGTCTACACAGTAAGATGCAAGCACATTTATATTATTGACTGTTGTGCCTGTTTGTATGAGAAACTGGAAGGGGAGCATTGTGTTTGAGGGAGGAGAACCACATGCAGTCCGAAGTGTTTTTTATGGAGAGGGATTTCTATTGTGTCCCTTTGCATGTCAAACTGAGTTAAGAATATTAAAATGTCCTGGTTACTAGTGCCTTTTACTTTTAATTGTTATTTTCTAAATACGATTGAGTGTGACTAGCAAGTTCTCTACCCTCTATGATTGATGCATAGGTGCAGAGTGAGACACATGCAAACTTCCATGGTTTTCAGATAAACCTATTCCACTTTGGGTCATTTTCTGGTATTATTAGATAGGTGCACAAGCCAGACATCTCCTGTGACGTTGAGGTAGGGAGTAAGTGGGCCTCATACATCAACAAATGTATGTGGAGCACTTCACAACTGAAGACATgaactccacacagacacacaacacaagACCATAATACCCCATCTCAACCGCATGACCAACACATGTCATTTACACATAACAGTAAGACATTAAGACACAGATCCATGTACATACAGACTTGCCAGTACATTTTCCTTTGTCAGGTTCCATGACCTAAACCCTCACTCAGAGTAGAGCTATGAACAGACTGCAAACTGACATAAAGATTACATTACAGAACAACTTTGTCTACATGCTCTGATGTCATATACCAAAAATAAGCCATGGGCATGTGGTAAAAcagattgttttttattttagctTGAACTGTATGTTTGTAATCTGAAATGATGTGAATGTATTTTTCTAAATCTCCATACTGCATTAAaagtttatatttataaaaata

Function

NR:

description
homeobox protein SIX4-like

GO: NA

KEGG:

id description
K15615 SIX4; homeobox protein SIX4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574265.2 True 4092 mRNA 0.48 3 40544916 40553190

Neighbor

gene id symbol gene type direction distance location
LOC110497836 trmt5 coding upstream 76193 40465907 ~ 40468723 (+)
LOC110498349 gphb5 coding upstream 442525 40099735 ~ 40102391 (+)
erb2 erb2 coding upstream 588611 39919737 ~ 39956305 (+)
LOC110497825 LOC106599208 coding upstream 698674 39820210 ~ 39846242 (+)
LOC118941473 NA coding upstream 753882 39786957 ~ 39791034 (+)
LOC110497841 LOC106598867 coding downstream 6089 40559279 ~ 40562442 (+)
LOC110497848 rtn1 coding downstream 154411 40707601 ~ 40757224 (+)
LOC110497851 rd3l coding downstream 228743 40781933 ~ 40785680 (+)
LOC110497847 LOC100195680 coding downstream 246934 40800124 ~ 40811342 (+)
LOC110497853 NA coding downstream 365818 40919008 ~ 40922739 (+)
G1623623 NA non-coding upstream 128972 40415041 ~ 40415944 (+)
G1623624 NA non-coding upstream 148874 40392600 ~ 40396042 (+)
G1623579 NA non-coding upstream 182332 40317325 ~ 40362584 (+)
G1623578 hif-1a non-coding upstream 188900 40353882 ~ 40356016 (+)
G1623575 NA non-coding upstream 252537 40292103 ~ 40292379 (+)
G1623735 NA non-coding downstream 22142 40575332 ~ 40575642 (+)
G1623746 NA non-coding downstream 35597 40588787 ~ 40589060 (+)
G1623753 NA non-coding downstream 43626 40596816 ~ 40597047 (+)
G1623760 NA non-coding downstream 54017 40607207 ~ 40607453 (+)
G1623770 NA non-coding downstream 66158 40619348 ~ 40620780 (+)
G1622452 LOC106599102 other upstream 482575 40051939 ~ 40062341 (+)
G1622047 LOC106599718 other upstream 1281026 39242203 ~ 39263890 (+)
G1621935 NA other upstream 1524388 38992643 ~ 39020528 (+)
G1621909 NA other upstream 1615733 38928586 ~ 38929183 (+)
commd8 LOC106600549 other upstream 1841401 38686057 ~ 38703559 (+)
plk4 LOC106597351 other downstream 430907 40984051 ~ 40993783 (+)
G1624239 NA other downstream 891331 41444521 ~ 41446361 (+)
G1624560 NA other downstream 1456771 42009961 ~ 42010330 (+)
tmem260 LOC106593970 other downstream 1471418 41988770 ~ 42029506 (+)
G1624565 LOC100846954 other downstream 1482163 42035353 ~ 42035944 (+)

Expression

LOC110497840(LOC106598809) Expression in all Baseline Samples

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LOC110497840(LOC106598809) Expression in each Bioproject

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LOC110497840(LOC106598809) Expression in each Sample
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Co-expression Network