LOC110497843 (LOC106598791)


Basic Information

Item Value
gene id LOC110497843
gene name LOC106598791
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 40585928 ~ 40588482 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574267.2
TTGGGATTGCCTTTTTGTGTGGATCCGACgatcagagagcgagagggagagaagggtaggCGCGAGAGGGGAGCgtgtgagtcagagagagacggaggtgaAACGAAAAGCCTCCATGTTTCAGCTGCCTATCTTGAATTTTAGCCCCCAGCAGGTTGCGGGGGTTTGCGAGACTCTGGAAGAGAGCGGGGACATTGAGCGCCTCGGTCGCTTCCTCTGGTCTCTGCCCGTCGCCCCAGCAGCCTGCGAGGTCCTCAACAAGAATGAGTCGGTGCTTAGGGCGCGGGCCATCGTGGCCTACCACACCGGGAATTTCCGAGAACTCTACCACATTCTGGAGAACCACAAGTTCACCAAAGAGTCTCACACTAAACTACAGGCCCTGTGGCTCGAGGCGCACTACCAGGAGGCAGAGAAGCTGCGGGGCCGCCCGCTAGGACCAGTGGACAAATACAGGGTGCGGAAGAAGTTCCCTTTACCCAGAACGATATGGGACGGAGAGCAAAAGACCCACTGCTTCAAGGAGAGAACCCGACATTTGTTACGAGAATGGTACTTGCAGGATCCTTACCCGAACCCGAGCAAAAAGAGGGAGCTCGCGCAGGCTACTGGACTTACTCCCACACAAGTGGGAAACTGGTTCAAAAATCGTAGACAAAGGGATAGAGCGGCGGCTGCGAAAAATAGGCTACAACAGCAAGGGATGTCCCAAGGCTCGGTTCGGTCTTTGGCAGATGATGATGGAACCGTCGATCGACTCGGTCCCGCCTCTAGTCCCGAGGCTAGTTTGTCAAGCAAAGCCGCCACCTCGGCTATCTCGATCACTTCCAGCGACAGCGAATGTGACATCTAATGGCGCATGAGGCAGTccagaggagggagaggataaATTCACAGGAGATAAATAAAGGAGATCCTAAAAGACAATCTAACAAAAAAACAGTCAGTGCCTGCGTTTGAATTTAAAGAAACTGGTCTTCTTTGATGGCTGCCAAAACATGAGGGATCTGACGGAATGCCCTGTCTTAAAGCTATACTTTCTTTTTGTTGTCGTTTTTCCGCTATGGTTGGCTGAAGCTAATACAAGCGGACAGAAAATGTAAAGAAAAATCATATTCATATTCACAATCCCTTTTTAGGGAGGACTAATAAACCAATGCCTCAAGATACAactaaaaatgaagaaaaaaaagacatttGAGCGCCTAACCTGCTATTTTCTGTGGGTATTTCATGTTGAAAAGACGCTGTAATATTTTTACTTTACTTTTAAagttttataaataatgtttatttACCTATTTAAATGATTGGCTCTGTTAGAATGTGATATTATTTTGCTTGGTGTTTTTAATATTTACCTTGTGCACAGGTGAACCCGTTGAGCATGTGCGCTTTAGTAAACATGTGTTTCagtaaaaacgttttttttaaagaagtaaagataacttaataAAATAATTGTTTATCAAAAGAACAAAACATCCGTTTTTTTATTCTCAGATT

Function

NR:

description
PREDICTED: homeobox protein SIX6

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19473 SIX3_6, OPTIX; homeobox protein SIX3/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574267.2 True 1506 mRNA 0.46 2 40585928 40588482

Neighbor

gene id symbol gene type direction distance location
LOC110497838 trmt5 coding downstream 41919 40467344 ~ 40547622 (-)
LOC110497839 NA coding downstream 119980 40430220 ~ 40465948 (-)
LOC110497835 LOC106598906 coding downstream 169903 40382584 ~ 40416025 (-)
hif1a hif-1a coding downstream 210146 40353876 ~ 40375782 (-)
snapc1b LOC106598946 coding downstream 236100 40342356 ~ 40349828 (-)
LOC110497844 LOC106598722 coding upstream 30970 40619452 ~ 40643379 (-)
LOC110497845 LOC106598670 coding upstream 78204 40666686 ~ 40674956 (-)
LOC110498350 NA coding upstream 100614 40689096 ~ 40699267 (-)
tdrd9 LOC106598466 coding upstream 169082 40757564 ~ 40788401 (-)
LOC110497852 NA coding upstream 201109 40789591 ~ 40804305 (-)
G1624775 NA non-coding downstream 1060 40583843 ~ 40584868 (-)
G1624649 NA non-coding downstream 195922 40389328 ~ 40390006 (-)
LOC110497832 NA non-coding downstream 269252 40312976 ~ 40316713 (-)
G1624780 NA non-coding upstream 5561 40594043 ~ 40594264 (-)
G1624781 NA non-coding upstream 6350 40594832 ~ 40595089 (-)
G1624817 NA non-coding upstream 92661 40681143 ~ 40681411 (-)
G1623175 NA other downstream 904399 39675439 ~ 39681529 (-)
G1623037 LOC106586451 other downstream 1174144 39396068 ~ 39411784 (-)
si:dkey-229e3.2 LOC106599591 other downstream 1215662 39365257 ~ 39370631 (-)
G1622757 LOC106600509 other downstream 1626954 38957024 ~ 38958974 (-)
G1624738 NA other upstream 41283 40629765 ~ 40630208 (-)
G1624737 NA other upstream 42096 40630578 ~ 40631738 (-)
LOC110497863 LOC106596965 other upstream 481281 41052866 ~ 41080347 (-)
LOC110497865 LOC106611002 other upstream 555625 41144107 ~ 41162883 (-)

Expression


Co-expression Network