LOC110497845 (LOC106598670)


Basic Information

Item Value
gene id LOC110497845
gene name LOC106598670
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 40666686 ~ 40674956 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574272.2
CACGCCCTCATCTTGTTGTGGTTATGCTTTGTTAGCCAGCtactgttgttagctagctaactatcatTGGTTATCACTGGGAAAGACGCATCTAGCCATCTTTTTTGTATCTTAACAAATTGCCATACTTACTATTGAAGATGAATAAGACAGCCGTTTGATTCGAAGGATATCCCTTCTCTCAATTCATAGATTTTGTCCTATAGGATGACACGGAAGTGTACTGCGGCTCCGGGGAGATGACCTGCACCCCCCTAGGGCATGGTCAGGATGGGGCCAGATGTGCCCCTGCTCAATGAATACAAGCAGGAGTTCTTCTGGAAGCGCTTCCCTCAGACGGTGCTGGGGGGTCCGCGCTTCAAGTTGGGCTACTGCGCCCCGCCTTATGTCTATGTCAACCAGGTGGTCTTGTTCTTGACACCATGGCTGTTAGGTGGCATTGGCACACTGTTGTGCCAGCTGCAGCTGCTGGAGGAACTCCACGCTGCCATGCTCTCTGGTCTGCTCATGCTTGGGGCAGCAGTGGGTGTGCAGGCCCTGGCACTCTACGCTGCCCGCAGGAATGCCATGGTGGAGCGGCTGGGAGTGCCCAACATCCTGGctgatgaggaggaggtggagttcACCCACTGTGTAGGCCCAGAGACGGTGAGGTTCATCGCCCCGGGGAAGAGGTTTGGGCTGAATGTGGTGCTTCACACCGTGCTGGCAGGGGCCCTCTGTGGCCTGGGGACATGGTATGTGCTCCTGGGCAGGTTGACTGCACTGTATGGCAGTGTGAGTGTAGCTTTGGTGGTATTTGTCCTGAGCTGGGTGACTCTGTGTACAGCGGAGTACTCCCTTATCGTCAACACGGCCACAGAGACGGCCACATTCCAGGCACAGGACACCTATGAGATCACCCCACTCACCCGACCACTCTACATATTAGCTTTCATAGCTGTGGACTTAGCTGATCGATTTACAGGTCCAGTGCCAGAGCTCCAGCTAACCAGTCAGGTGCTTCATGTGGTCTTCCTGGTCCTGCCCCTGCTGTGGGCGCTGGGTATGTTGTCACCACTGGACGCCCTCCTCCTTTGGGGCATGGAACAGGCTCTGGTGTTCGGTTTGGGCGGCTCTCCCATGTCCAGTAACCTTAGATTGCTGGGGATGTTCgccatgtctgtatgtgttacTGTTTGTACCTTCTTCATCCCGTCCACCTTGGGTGTAGTCCTCTTCTCGATGGCCATGGGGTTTCTGCTTAGTTTGGATCTCAGCCAGTTTGGGACTTATTGTGGAGGAGGGTCCAGGGGAGCCTGTGGTGATAGTGGATGGCATAGGGGGGCATCACCTGCCCCTCCCAGCTTGTTTGGCTGGCGGCTGGGCTGCAGTGAGCTGCTGCTCTACCTGGGGCTGCTGCTGGGGGCCATGTCTGAGGCAGGACTCTTACATCACTTCCTCAGTGCCTCCCAGACCCAGAACTTGGCCAGGGTTTCTCAAGATGCTGTCAGTTACCTCCTCATCACCCTTTTCATCGTCTGCTGGGCTCTCCGAGAGATCCAGGGAGCCTATGTTTTTGGAGGAGTGTTCCTCAACCCCCTGTACCCAAGAGGAATGGCCAATGTCCGGGTGTTCAAGCAGCGGAGCAGGGGTCTCCACATGGCTGGGGCTATCAGGAGGGTGCTGCTCAATCTGGTGTCTCCCTTTGCAATGGTTGCTTTCCTGgctctggatggctctgttcaGCAGCTCCACACAGCCTCTCTCAGCGTGGGATTCACCCGGGCCTTCAGAGTGGTGTGGCAGAGCTCTGAAGATGCCCTGCTccagatggtggtggtggtgtcagtgAGGCTGGCTGCAGGGGACACCAGACTGCCTGGGTGGGACAGCCTGGGCACAGGGGTCCAGCTCCTTCTAGTGGGCCTGCTGAGTGATAGGCTGCTCCAGTTCCTGTCCAAGCTGAAGTTTGCCCTGGCCGTGCTGGTGACCTCCTGGACAGAGAAGAAACAGCGGCGCCAGTCGGCCGGGACCCTCCTGGTCCTGAACGCCTCCCTGTGtcctctgctgctctctgtggTGGTCCTATCAGCCATGCTCTCTGCTCCTTTGCTGCCCCTCTTCACCCTGCCCATCTTTCTGGTGGGCTTCCCCAGGCCTCAGCGCAGTTGGCCAGGGCCCGTGGGCACCGCCTGCCCCTGTCCAGACTCCATCTACTACCAGCAGATGAGTATGAGCCTGGCCTGTGCTCTGAGGAGCGCCTTTGCCAGGGGATCACTTGGTGCTCTGACTCCTGGCTCCCACTTCCTGGGTCGCTTCCAGGACCGTGTGGTTTGGATCATGATTTTAGAGAGAGGATATGGCTACTGTACTGTCAACATCAAGGGTCTGGAGCTGCAGGAGACCTCGTGCCACACGGTGGAGGCTCGGAGGGTGGATGAGGTGTTTGAGGGGGCCTTTGAGCGCCCTGAGCGGCTTGGCCTCAACCAGGGGATAAACCTGCACTGGGGAAACGCCCTCACCCCATGTGCTGCCCTGCCTGTGCGCGTCTACTCTGACGCCCGCAATGTACTTTCAGGCATCATTGACTCGCATGACAACCTGAGGAAGCTCCAGGATGACTTCCTGAAGGCCCTGGTGTGGCTGCTGCTGAGGAATTGTGTCCAGAGACTAAAGGCATTTCCCTGGGGCActgaggaggggacagggggcGGGGGCACGAAGTCTCAGTCCTCCCAGCTTGGCCAATCGACTGTCACGCAGCCTGCAGAGGCTATCATGGTGGAGTCCAACATCTCCTCTCTCAAGTTTAGACGGGACAGCTCCAGTTTGACCTCCTTTGGTGACTGGTCAGATGAGGATGACCTGTTTGGGCCTCAGCCGGCCAGGCGGACAGTGGCGTTGGTAAGTACAGAGGCCCAGCTGGGGGACACAGTGCTCCAGACAGGCCCCTCGCTGCcaggctctgtggagatggacaGTCTGTTTGAGAACATGGCCCTCTCTGCCCTTCAGCCCTTGCAACCTCTGGGTTTGGGCCTGGGTCTGCCAGCTGTGGACAAAGGCAGGAACCCTGAAGTCCCCCCCACAAAGTCCTCCGGCACCTTGGCCCATGAAAACTTCAGTTGCCCCCACTCTGAGTTGTTCAGCCTGCCCCCTGGGTGGAGGACAGCCCCCTTGTTACCATTCCGGTTACAGCAGCTCAGGCCTTTGTTCCCTGAGGAGTGGTTTCGGTTCACTTTGGGAAGGTTGGCGCTGGCCGTTCAGGACGAGGCTTCGGAGGATGTGGCCAAATCCCTGAAGGAGGATGGGGGGCTGAGGGACCTCCATGCCCAGGTGGCCCTGTCATGCCTCATCTCCCTGGGGGCAGAGTCTGCCTTCACCAGCCCCAGCTATGTGTACAGGGTGTACAGTGGGGACGTGCCTTGGACAGAGGGGCTGAAGTGGCTCTCTGAAAACAAAGAACTTTACCAGCTTGCACTTAAGGCTTTCAGGTACAGTTTCAAGCTTCTGTTTGATCAGGCAAGTTTGGGGCCCATGGAGAGTCTTGATGAGCTGTTCAGCACCCTGGAGGAGTATGAGCGGGACTGGTACATCGGCCTGGTGGCTGAGAAAGGCTGGCAGGACAGTGTCCTACAGGAGAAACCTTTCCTCTTCTCACTGGGCCATGACCTCACCATGGGAACTTACACAGGGCGGGTTCTGTCCCTGCAGGAGCAGCTGGTTCAGGTAGGCCATCTGAACGGGGAGGGGGTGCGTGGCCAGTGGGCTAACCTGTCCTGGGAGCTGCTCTACGCCACCAATGACGACGAGGAGCGCTACAGCATCCAGGCCCACCCCATCATGCTGAGAAACCTCACTGTCCAGGCAGCCGACCCCCCTCTGGGGTACCCCATCTACTCCTCTGTCCCCCTGCACCTCCCCTGCTTCTAACACCCAAACCTTGTCCTCTCCCTGGGACCTTCAGACTCCTCTGCTGGCCTCCTATAAACACCCCGTCTCTGGTTTGCCCAGCTTTATCACTGGGTAGGCCCTATGTTGTGGCCTGTATGTGTAACCCGTCTATTTCACTAGGGTATCCTAGGAGGGCACCTATAAGGCAGATCCAAACAAATGGTTTCATTCATGCAGGAGCGACAGCACAATACTTATGTTCAAAATATTTACGTAACTTTTACCAAATGTGTGGTACTAGTTCAAACAATGAAATGTGAGTGTTCTGGGAAAAAATCTATATTTACAAGGGATACGTTTGTTCAGAAGTTTTTTTTATCATTCACATACTCTTGAACAAAGAGTAATCACTTGTTAATGAAATGTTTTCTTTTTGTACTGTAACGTTAGTTGCAAATGTTTTTTGGAGTTTGTTTTTATCCAACTTATCCGTTGTACTTAAAGTGATCAGATACAACCACCTTCCGCAGAAGAAGACCGCCAACACAGTGCTCCCAATTACATGATGAACTTATCTTACAAATGTTTTCCCTCAAATACTGCTCCCAAAGGCAAAGAGGGACAACGATTTCGCTTTTTCGAGGATGTGCCTTGGGTTGGACTTTGCAGTCTTTGTAATGTGGTTAGTCATTTTTGATGCCATCCTTTTGTTTACAGTTCACTTGTTTACAGTTGAagacaattgtatttgtcatgttCTCCTGTACATACTGTTTTCGTATACTGTGATTTGTGTATGGTGTGTAATTGTACATacataaaaatagatttttttcccccc
>XM_021574273.2
CACGCCCTCATCTTGTTGTGGTTATGCTTTGTTAGCCAGCtactgttgttagctagctaactatcatTGGTTATCACTGGGAAAGACGCATCTAGCCATCTTTTTTGTATCTTAACAAATTGCCATACTTACTATTGAAGATGAATAAGACAGCCGTTTGATTCGAAGGATATCCCTTCTCTCAATTCATAGGTAACTTTtaagtaacatagctagctaacgttagctactatAAGCACTGCAGTTTGCTAGCAATAATGGTAGTTAAATCTGGACATCTAGCGTTATTCGCCTGCTACCGGTAGCATCTAGCTAGTTAATGTTATTGCGTATTTCAAGTAATATTCACTAACCTTGTGTCTGACATTCGctaagtagctagttagctatcccATCCCATAGATGAATGCAGCTAGCTTATATTATGTTTTATTGGTAACCTTGTTGCGCTAACGTTGCTAGCTAGCCATCATTGTTTACATTTGAGTCAAGGTTACTTCGTTTATACAACATCTACTGTAGCTATGCAATAATATTGGCCTGACTACGAACTTAGTCATATGTCACTAATGACACAGCCAGGCAACCAGTTCCCTTTGTCAGCAGTGGAAAACTTACCTAGCAAACCTGTTGACAACAATGCATAACCATATTTGATTTTGTCCTATAGGATGACACGGAAGTGTACTGCGGCTCCGGGGAGATGACCTGCACCCCCCTAGGGCATGGTCAGGATGGGGCCAGATGTGCCCCTGCTCAATGAATACAAGCAGGAGTTCTTCTGGAAGCGCTTCCCTCAGACGGTGCTGGGGGGTCCGCGCTTCAAGTTGGGCTACTGCGCCCCGCCTTATGTCTATGTCAACCAGGTGGTCTTGTTCTTGACACCATGGCTGTTAGGTGGCATTGGCACACTGTTGTGCCAGCTGCAGCTGCTGGAGGAACTCCACGCTGCCATGCTCTCTGGTCTGCTCATGCTTGGGGCAGCAGTGGGTGTGCAGGCCCTGGCACTCTACGCTGCCCGCAGGAATGCCATGGTGGAGCGGCTGGGAGTGCCCAACATCCTGGctgatgaggaggaggtggagttcACCCACTGTGTAGGCCCAGAGACGGTGAGGTTCATCGCCCCGGGGAAGAGGTTTGGGCTGAATGTGGTGCTTCACACCGTGCTGGCAGGGGCCCTCTGTGGCCTGGGGACATGGTATGTGCTCCTGGGCAGGTTGACTGCACTGTATGGCAGTGTGAGTGTAGCTTTGGTGGTATTTGTCCTGAGCTGGGTGACTCTGTGTACAGCGGAGTACTCCCTTATCGTCAACACGGCCACAGAGACGGCCACATTCCAGGCACAGGACACCTATGAGATCACCCCACTCACCCGACCACTCTACATATTAGCTTTCATAGCTGTGGACTTAGCTGATCGATTTACAGGTCCAGTGCCAGAGCTCCAGCTAACCAGTCAGGTGCTTCATGTGGTCTTCCTGGTCCTGCCCCTGCTGTGGGCGCTGGGTATGTTGTCACCACTGGACGCCCTCCTCCTTTGGGGCATGGAACAGGCTCTGGTGTTCGGTTTGGGCGGCTCTCCCATGTCCAGTAACCTTAGATTGCTGGGGATGTTCgccatgtctgtatgtgttacTGTTTGTACCTTCTTCATCCCGTCCACCTTGGGTGTAGTCCTCTTCTCGATGGCCATGGGGTTTCTGCTTAGTTTGGATCTCAGCCAGTTTGGGACTTATTGTGGAGGAGGGTCCAGGGGAGCCTGTGGTGATAGTGGATGGCATAGGGGGGCATCACCTGCCCCTCCCAGCTTGTTTGGCTGGCGGCTGGGCTGCAGTGAGCTGCTGCTCTACCTGGGGCTGCTGCTGGGGGCCATGTCTGAGGCAGGACTCTTACATCACTTCCTCAGTGCCTCCCAGACCCAGAACTTGGCCAGGGTTTCTCAAGATGCTGTCAGTTACCTCCTCATCACCCTTTTCATCGTCTGCTGGGCTCTCCGAGAGATCCAGGGAGCCTATGTTTTTGGAGGAGTGTTCCTCAACCCCCTGTACCCAAGAGGAATGGCCAATGTCCGGGTGTTCAAGCAGCGGAGCAGGGGTCTCCACATGGCTGGGGCTATCAGGAGGGTGCTGCTCAATCTGGTGTCTCCCTTTGCAATGGTTGCTTTCCTGgctctggatggctctgttcaGCAGCTCCACACAGCCTCTCTCAGCGTGGGATTCACCCGGGCCTTCAGAGTGGTGTGGCAGAGCTCTGAAGATGCCCTGCTccagatggtggtggtggtgtcagtgAGGCTGGCTGCAGGGGACACCAGACTGCCTGGGTGGGACAGCCTGGGCACAGGGGTCCAGCTCCTTCTAGTGGGCCTGCTGAGTGATAGGCTGCTCCAGTTCCTGTCCAAGCTGAAGTTTGCCCTGGCCGTGCTGGTGACCTCCTGGACAGAGAAGAAACAGCGGCGCCAGTCGGCCGGGACCCTCCTGGTCCTGAACGCCTCCCTGTGtcctctgctgctctctgtggTGGTCCTATCAGCCATGCTCTCTGCTCCTTTGCTGCCCCTCTTCACCCTGCCCATCTTTCTGGTGGGCTTCCCCAGGCCTCAGCGCAGTTGGCCAGGGCCCGTGGGCACCGCCTGCCCCTGTCCAGACTCCATCTACTACCAGCAGATGAGTATGAGCCTGGCCTGTGCTCTGAGGAGCGCCTTTGCCAGGGGATCACTTGGTGCTCTGACTCCTGGCTCCCACTTCCTGGGTCGCTTCCAGGACCGTGTGGTTTGGATCATGATTTTAGAGAGAGGATATGGCTACTGTACTGTCAACATCAAGGGTCTGGAGCTGCAGGAGACCTCGTGCCACACGGTGGAGGCTCGGAGGGTGGATGAGGTGTTTGAGGGGGCCTTTGAGCGCCCTGAGCGGCTTGGCCTCAACCAGGGGATAAACCTGCACTGGGGAAACGCCCTCACCCCATGTGCTGCCCTGCCTGTGCGCGTCTACTCTGACGCCCGCAATGTACTTTCAGGCATCATTGACTCGCATGACAACCTGAGGAAGCTCCAGGATGACTTCCTGAAGGCCCTGGTGTGGCTGCTGCTGAGGAATTGTGTCCAGAGACTAAAGGCATTTCCCTGGGGCActgaggaggggacagggggcGGGGGCACGAAGTCTCAGTCCTCCCAGCTTGGCCAATCGACTGTCACGCAGCCTGCAGAGGCTATCATGGTGGAGTCCAACATCTCCTCTCTCAAGTTTAGACGGGACAGCTCCAGTTTGACCTCCTTTGGTGACTGGTCAGATGAGGATGACCTGTTTGGGCCTCAGCCGGCCAGGCGGACAGTGGCGTTGGTAAGTACAGAGGCCCAGCTGGGGGACACAGTGCTCCAGACAGGCCCCTCGCTGCcaggctctgtggagatggacaGTCTGTTTGAGAACATGGCCCTCTCTGCCCTTCAGCCCTTGCAACCTCTGGGTTTGGGCCTGGGTCTGCCAGCTGTGGACAAAGGCAGGAACCCTGAAGTCCCCCCCACAAAGTCCTCCGGCACCTTGGCCCATGAAAACTTCAGTTGCCCCCACTCTGAGTTGTTCAGCCTGCCCCCTGGGTGGAGGACAGCCCCCTTGTTACCATTCCGGTTACAGCAGCTCAGGCCTTTGTTCCCTGAGGAGTGGTTTCGGTTCACTTTGGGAAGGTTGGCGCTGGCCGTTCAGGACGAGGCTTCGGAGGATGTGGCCAAATCCCTGAAGGAGGATGGGGGGCTGAGGGACCTCCATGCCCAGGTGGCCCTGTCATGCCTCATCTCCCTGGGGGCAGAGTCTGCCTTCACCAGCCCCAGCTATGTGTACAGGGTGTACAGTGGGGACGTGCCTTGGACAGAGGGGCTGAAGTGGCTCTCTGAAAACAAAGAACTTTACCAGCTTGCACTTAAGGCTTTCAGGTACAGTTTCAAGCTTCTGTTTGATCAGGCAAGTTTGGGGCCCATGGAGAGTCTTGATGAGCTGTTCAGCACCCTGGAGGAGTATGAGCGGGACTGGTACATCGGCCTGGTGGCTGAGAAAGGCTGGCAGGACAGTGTCCTACAGGAGAAACCTTTCCTCTTCTCACTGGGCCATGACCTCACCATGGGAACTTACACAGGGCGGGTTCTGTCCCTGCAGGAGCAGCTGGTTCAGGTAGGCCATCTGAACGGGGAGGGGGTGCGTGGCCAGTGGGCTAACCTGTCCTGGGAGCTGCTCTACGCCACCAATGACGACGAGGAGCGCTACAGCATCCAGGCCCACCCCATCATGCTGAGAAACCTCACTGTCCAGGCAGCCGACCCCCCTCTGGGGTACCCCATCTACTCCTCTGTCCCCCTGCACCTCCCCTGCTTCTAACACCCAAACCTTGTCCTCTCCCTGGGACCTTCAGACTCCTCTGCTGGCCTCCTATAAACACCCCGTCTCTGGTTTGCCCAGCTTTATCACTGGGTAGGCCCTATGTTGTGGCCTGTATGTGTAACCCGTCTATTTCACTAGGGTATCCTAGGAGGGCACCTATAAGGCAGATCCAAACAAATGGTTTCATTCATGCAGGAGCGACAGCACAATACTTATGTTCAAAATATTTACGTAACTTTTACCAAATGTGTGGTACTAGTTCAAACAATGAAATGTGAGTGTTCTGGGAAAAAATCTATATTTACAAGGGATACGTTTGTTCAGAAGTTTTTTTTATCATTCACATACTCTTGAACAAAGAGTAATCACTTGTTAATGAAATGTTTTCTTTTTGTACTGTAACGTTAGTTGCAAATGTTTTTTGGAGTTTGTTTTTATCCAACTTATCCGTTGTACTTAAAGTGATCAGATACAACCACCTTCCGCAGAAGAAGACCGCCAACACAGTGCTCCCAATTACATGATGAACTTATCTTACAAATGTTTTCCCTCAAATACTGCTCCCAAAGGCAAAGAGGGACAACGATTTCGCTTTTTCGAGGATGTGCCTTGGGTTGGACTTTGCAGTCTTTGTAATGTGGTTAGTCATTTTTGATGCCATCCTTTTGTTTACAGTTCACTTGTTTACAGTTGAagacaattgtatttgtcatgttCTCCTGTACATACTGTTTTCGTATACTGTGATTTGTGTATGGTGTGTAATTGTACATacataaaaatagatttttttcccccc

Function

NR:

description
pecanex-like protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574272.2 False 4717 mRNA 0.55 11 40666686 40674956
XM_021574273.2 True 5181 mRNA 0.53 11 40666686 40674956

Neighbor

gene id symbol gene type direction distance location
LOC110497844 LOC106598722 coding downstream 23307 40619452 ~ 40643379 (-)
LOC110497843 LOC106598791 coding downstream 78204 40585928 ~ 40588482 (-)
LOC110497838 trmt5 coding downstream 122677 40467344 ~ 40547622 (-)
LOC110497839 NA coding downstream 200738 40430220 ~ 40465948 (-)
LOC110497835 LOC106598906 coding downstream 250661 40382584 ~ 40416025 (-)
LOC110498350 NA coding upstream 14140 40689096 ~ 40699267 (-)
tdrd9 LOC106598466 coding upstream 82608 40757564 ~ 40788401 (-)
LOC110497852 NA coding upstream 114635 40789591 ~ 40804305 (-)
LOC110497850 LOC106598245 coding upstream 136483 40811439 ~ 40857717 (-)
LOC110498351 LOC106598081 coding upstream 183716 40858672 ~ 40920155 (-)
G1624781 NA non-coding downstream 71597 40594832 ~ 40595089 (-)
G1624780 NA non-coding downstream 72422 40594043 ~ 40594264 (-)
G1624775 NA non-coding downstream 81818 40583843 ~ 40584868 (-)
G1624817 NA non-coding upstream 6187 40681143 ~ 40681411 (-)
G1624923 NA non-coding upstream 229682 40904638 ~ 40905362 (-)
G1624954 NA non-coding upstream 294577 40969533 ~ 40969797 (-)
G1624936 NA non-coding upstream 375350 41050306 ~ 41051596 (-)
G1624737 NA other downstream 34948 40630578 ~ 40631738 (-)
G1624738 NA other downstream 36478 40629765 ~ 40630208 (-)
G1623175 NA other downstream 985157 39675439 ~ 39681529 (-)
G1623037 LOC106586451 other downstream 1254902 39396068 ~ 39411784 (-)
LOC110497863 LOC106596965 other upstream 394807 41052866 ~ 41080347 (-)
LOC110497865 LOC106611002 other upstream 469151 41144107 ~ 41162883 (-)
G1625066 NA other upstream 519477 41194433 ~ 41194759 (-)
G1625428 arf6 other upstream 1171299 41846255 ~ 41850433 (-)

Expression


Co-expression Network