LOC110498350


Basic Information

Item Value
gene id LOC110498350
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 40689096 ~ 40699267 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110498350
gtggttgaaaaatgagttttaatgactccaacctaagtggatgtaaacttctgacttcaactgtagtaacATCTGTTCAGTCCACGGTGATGAAGAAGAAAATGATGTACTACAACATGCATGTGAGGACAGGCCAGAGGAACCTGGCAGAGAACCAGGCTAATCtgctgtagaacaagaggaatcTCTTACAGCTGCCAGAGGACAGGCCAGAGGAACCTGGCAGAGAACCAGGCTAATCtgctgtagaacaagaggaatcTCTTACAGCTGCCAGAGGACAGCCCAGAGGAACCTGGCAGAGAACCAGGCCAATCtgctgtagaacaagaggaatcTCTTACAGCTGCCAGAGGACAGCCCAGAGGAACCTGGCGAGAACCTGGCCAATCtgctgtagaacaagaggaagcTCAATTACGCACTCAGAAATGTCAGTACAACGCTATGCCTTCAAAAATAGACTTTTGATACGTTTGTCATTCATTTACAGTGGTGCTTAATATGATTGTTGTGTTGGTGTCTTGAGCAGCTGGAGTGTGAGCTGTCTGAGGAGCAGGACCTGTGCCGGAAGTCAGCCCGTACCTGGGAGAATGGACTGTCCTCGCTGAGTGAGGGCTCTGGACTGCAGTGACACCCCTGCTAATATTACCCACGACCCTGGCCTGGGATCCTCTCCAAGCTAGACGCCCTGTAGTCCATGACCTGACAAATTTAGGcctttctgagggcaaaagggggtgcaactcaatattaggaagtgttcctaatgttttgtgcactcagcgTACATGGATAATGGATTAGACCTCCTACAGTCTGattttgcattgttgtttacaTGTAAGCTTTCTATTGGTACGTAGATAATCAAGTGTAAAAAGTAGAGTTATTTTGCCTTGTTTAAGTATAATTTTGTATCTCGGCCTCCTTATTTTTTCCATTAAAGGTTGGAGTCGAGTACCCTTTCTCAGGTACCAGCTACCCTTCAATCTAGCCTGAGCGCAGTTCCTCATACTGGCTATCTATGTCTAAAATTATACAGAAATAGTTGAACAGACTACATAAACTGCAATATTACACCTGTCAGTAGCTCTGTTTGAGACTGATCCTTATGCTTTCTTTACTCCTAATGTTTGTGCAGTAATTACAAATGCTGGCTggagtatctgttctatgtgtctGATCCTGAAAGAACCAGTAAGAAAAAGGAGACATTCCAGAGGACGGCTTTAAAACAGCAGATATTTATAAGGTAATATTTAGATTGTACGCTATGCCTGTGATTGGGCCATTGTTTTAGTGCCTGTGATTGGGCCATTGTTTTAGTGCCTGTGATTGGGCCATTGTTTTAGTGCCTGTGATTGGGCCATTGTTTTAGTGCCTGTGATTGGGCTATTGTTTTAGTGCCTGTGATTGGGCCATTGTTTTAGTGCCTGTGATTGGGCCATTGTTTTAGTGCCTGTGATTGGGCCATTGTTTTAGTGCCTGTGATTGGGCCATTGTTTTAGTGCCTGTGATTGGGCCATTGTTTTAGTGCCTGTGATTGGGCCATTGTTTTAGTTCCTGTGATTGGGCCATTGTTTTAGTTCCAGAGATTGGGCCATTGTTTTAGTTCCTGAGATTGGGCCTTTGTTTTAGTTCCTGAGAATGTATCTGGTGTCTGTGTTAGGCCCTGGGCAGAGAGAGGGTTGTACTCTTTTCTAACAGCCGGAGTGTGACGGACAGGCCTAGGAGTACAAACAGTGACAGGCCAACGAAGGTACCTCCAAGCAGAGCATAGACCCTCTCCTTTTCAGACATGGTCTGTATGGTCCTATTTCATGTTTCACACAATTCAATGACTTTGTATTGCTAATGAAACCTTGAGGATATAAATCAGGATAAAACTGTAAATGTGTTAACGATAttcatttgatttagaatttgaTATATCAGAGAAACATAAATGAAATGGCTCTAACTGTCCTCCTGTTTCAAGGTCAGATCATTGTTTCCAATGTGTTCCTGGGCCGCAGCATCAGTGGACCCCCTCAACTACCCTAAAGCTCATTCCGTTTACCGCAATGTGAGCCCAGAGCAGGGCCATAAGACAAATGGAGATACTGTAATTTGAAATATTACAGCTATTACTTTTCAGAACAACAATTATTTTTACTGGTGACACTACTCTCTTAATGAAAACAACCAGCAAAAGTCAACATACTACTGTTCCATCCTCCTGTTGACAAACCTGAGACTCTTATCCATATAGGTAGGCCTTGCTCCTTCAAGATCCACCATGGCTGTGACTGCAGTCTATTTGACCATGAGCTTGTCCTGCTGGAGTACCTCATCGACTTTGAGTATAACTcctaggttggaaaaagtatacCATGTTTGTCTTTCGATGTTCCAGCAGCAGAGGCACAGAAGACCCCCCTCCCAATGATATCAACCTGGATGAGGAAATACTGAACATGGATCCCATGGTCAAACCATGGCCCAAGATGCTGAGCCTGGATGAGAAGACTTTACTCAATGTAGCCAGGGCCAACAACGTCCTCAGTCAAGTTACAGTGTTGAATCTCCATGGCAACAGTCTGAGTAAGCTGAAGGAGATCTCTCGTCTGACCAACTAGAGGACATCTCCCACACGCCCAACCTGGACTTGGTGGACACCAGTTACAACCACCTGCTGTTCCGAGAGGGGCTGAAAGGACTAGGGCGGCTCATGCAGCTGGACCTGCACTGGAACCAGCTGACCCGGGCCAGGGAGGAGACGGCTGTGCTCCGGAAACACGCCCCCGCACAGCTGCGACTCGACTGGGCACCCGTTACTATCCCTGGCACAGGCCTGAGGCAGTGAGGATGACTCTTCTGGGATGTCTGATGACCCTCACACACCTGGATGACGTGCTTGTGACAGAGGGTTCTTTCCAGGTGCTTCATCTGCAGTACAAGTGCAGCCTTTTTATTTAATGATGACCTCTGCACCCTGAGAAGATCACAGCCCTTAACCTTGACAGCTAGAGGCTCTCCAGGCTCATCAACCTGTGCAAACTGGTCAAACTGCGCTGGGACTCCTTCAATGACATCTCTAAAGTGGAGGGTCTGGACAACTGCCAGCATCTAGAGGAGCTGTCTCTCAACGATAGCTTCATCTCTAGGCTAGGCGATGAATGTGGTTTCCCCACCCTATCCTTGTCCTGTCAGGTGTGTCCAAGCTGTCCTATCTGGATGGCACTGGATGGCACCATCCTGGACTGGCTGTCCAAcccacacttcctgtgtgtggAGAACAACTGCATTGGCTCCCTGTATGTGGTACAGAGGGCCCGCTCCCTCTTCAAGCTGTACATCGgcaacatcatcatcataacaCGAGACATCTACCACCTGAAAATGAGCAGCTTAATCATTCTGGATCTGTACAGGAATCCTTCAGTGGAGAAACGAAAACTATGGGAAATATGTGGTGTTCCACTTCCCCTCTCTAAAGGCACTGGATGGGACTGCAGTGAAAATGGCGGCTTGTGAGATTGCCAAGGATGTGTTTGGTGGATGCCTGACCCCTGACATGGTGGCGGAGAAACTGGGACACTAACTATTCTGACATCGCCGATCTCAACCTGCAATCCTGTGCAATCAGgatGTTGGATCTGACCCCAGAAGACCTGTTCTACAACCTGCACAGTGTCAACCTAGAGCACAACAACCTCACCTCCTTCAGTGTGCGTGTCTGCCTGACCAACATCAAGGCACTGTGTTTAAACAATAACCACAGAGTccatcctgccaaggcagaaggcCCAGGCTCACCTGACTAACAGACAGATTCTCTCCCACAAGGTGAATTCCATTGGTTATGGCTAGCAGGGCTCCTCAAAGGCAGTAGTGGACCCTGCGGACAGCCTGGAGCCACTGATGGGCAGCCTGGAGGTGCTGCATTTGAGCCACAATGGCATCTCCAATTATTGCCAATCTGCAGCTCAGCAGGCTCACCAATCTCAAAGCACTCTTCCTCCAAGGTAATGAGATCAGACAGGTGGAGGGCTGGGAGGGGCTGCACTAGTTGCGGGAGCTGGTCTTGGACCCGAACCGGATCAAGATCCTTTTTTGGTCAGGCTGTCCTGCTGGAGCTGCACCTGGTAGAGAACCGCCTCCGGGAGTTCAACCACCCGTTACCAAAATGAGGAGGCTGTTCCTGGGCATGAACAAACTACAGTTCAGGAGCTTAATCCTGCTAGGGTGGAGCGCCAACAGCCGCTCCAGAAACAATACCTCCTGCTGTCAGCAGCATGAGATCACTGCTGCACCCATGTGCCCTGGCAagaccatctctcctctcctctcctctccttccctcagccatCCCTCCGGCGGGGACAGACAAGGCTCTGACCGGAGAGGATGGCTTTGTCCCCTGGCCAAGGGGGAGCAGAGGGTACCATCagctggaccagggagaaggggagggcgGCTATCAGCTGGAACATTGGAGATGATAGAAGTGTGGTCTCTGAGGGTGGTGAATTCAGAGAACTGTGTTGGACTCACAAACAGCCCCATGCCAGTTTAG
>TU1859319
ATGAGAGCGAAATAATTCACAAAAGAGAAAATGTGTTAATGACAAGGGAATCATGTCCATCATAGATGAATGTGGTTTCCCCACCCTATCCTTGTCCTGTCAGGTGTGTCCAAGCTGTCCTATCTGGATGGCACTGGATGGCACCATCCTGGACTGGCTGTCCAAcccacacttcctgtgtgtggAGAACAACTGCATTGGCTCCCTGTATGTGGTACAGAGGGCCCGCTCCCTCTTCAAGCTGTACATCGgcaacatcatcatcataacaCGAGACATCTACCACC
>TU1859321
TTTAGTTCCTGTGATTGGGCCATTGTTTTAGTTCCAGAGATTGGGCCATTGTTTTAGTTCCTGAGATTGGGCCTTTGTTTTAGTTCCTGAGAATGTATCTGGTGTCTGTGTTAGGCCCTGGGCAGAGAGAGGGTTGTACTCTTTTCTAACAGCCGGAGTGTGACGGACAGGCCTAGGAGTACAAACAGTGACAGGCCAACGAAGGTACCTCCAAGCAGAGCATAGACCCTCTCCTTTTCAGACATGGTCTGTATGGTCCTATTTCATGTTTCAC

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 9-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110498350 False 4561 mRNA 0.47 13 40689096 40699267
TU1859319 False 287 TUCP 0.49 1 40695475 40695761
TU1859321 True 274 lncRNA 0.47 1 40697436 40697709

Neighbor

gene id symbol gene type direction distance location
LOC110497845 LOC106598670 coding downstream 14140 40666686 ~ 40674956 (-)
LOC110497844 LOC106598722 coding downstream 45717 40619452 ~ 40643379 (-)
LOC110497843 LOC106598791 coding downstream 100614 40585928 ~ 40588482 (-)
LOC110497838 trmt5 coding downstream 145087 40467344 ~ 40547622 (-)
LOC110497839 NA coding downstream 223148 40430220 ~ 40465948 (-)
tdrd9 LOC106598466 coding upstream 58297 40757564 ~ 40788401 (-)
LOC110497852 NA coding upstream 90324 40789591 ~ 40804305 (-)
LOC110497850 LOC106598245 coding upstream 112172 40811439 ~ 40857717 (-)
LOC110498351 LOC106598081 coding upstream 159405 40858672 ~ 40920155 (-)
LOC110497855 LOC106597482 coding upstream 251689 40950956 ~ 40959546 (-)
G1624817 NA non-coding downstream 7685 40681143 ~ 40681411 (-)
G1624781 NA non-coding downstream 94007 40594832 ~ 40595089 (-)
G1624780 NA non-coding downstream 94832 40594043 ~ 40594264 (-)
G1624775 NA non-coding downstream 104228 40583843 ~ 40584868 (-)
G1624923 NA non-coding upstream 205371 40904638 ~ 40905362 (-)
G1624954 NA non-coding upstream 270266 40969533 ~ 40969797 (-)
G1624936 NA non-coding upstream 351039 41050306 ~ 41051596 (-)
G1625032 NA non-coding upstream 421584 41120851 ~ 41122447 (-)
G1625067 NA non-coding upstream 497378 41196645 ~ 41196974 (-)
G1624737 NA other downstream 57358 40630578 ~ 40631738 (-)
G1624738 NA other downstream 58888 40629765 ~ 40630208 (-)
G1623175 NA other downstream 1007567 39675439 ~ 39681529 (-)
G1623037 LOC106586451 other downstream 1277312 39396068 ~ 39411784 (-)
LOC110497863 LOC106596965 other upstream 370496 41052866 ~ 41080347 (-)
LOC110497865 LOC106611002 other upstream 444840 41144107 ~ 41162883 (-)
G1625066 NA other upstream 495166 41194433 ~ 41194759 (-)
G1625428 arf6 other upstream 1146988 41846255 ~ 41850433 (-)
G1626105 NA other upstream 1555968 42255235 ~ 42255797 (-)
LOC110498350 NA other downstream 1675 40689096 ~ 40699267 (-)

Expression


Co-expression Network