LOC110497850 (LOC106598245)


Basic Information

Item Value
gene id LOC110497850
gene name LOC106598245
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 40811439 ~ 40857717 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954811.1
CTGCCCTCCGTAATTATTGTGGGATGTGAAGTAGAGTCCACTGTAAACACCAGTTGGACACAGACTTTAAAAAACACCAGTTGGAAACAGACTTTAAAAACGAACTATTTTTTCCAATTTGTCGAAGTTTAATGCAACATTTAAATGGATACCCATCTGTGATTAATGGACGCATTTGATTGTATGCCTCGACTGATTTCAGCTTTTCCATTCCATAGACCGATCTACAGGCAGTCCGCGATCATTATAGTTGTGTTCAAGAGCGGTCGGTGAAATCGGCCACTAATAAATAATGGAGACCGTGCAGACTTCTATGAGAATGGTTTGCCCGTTTTTAATGAAGAGGCTGATACGAGGTTAACTTAATTTACTGTAAACGTCAGAGTTGGGGGAACATTAAGTTGTCTTCACTCAGGATGGGAGTCCTCAAGATCATGCTGCTCATCTTTGAGTCTGTTCTGTTGTCTGACTGTGCAAGGGGTCCTCCGTGGGTGTCTGAGAGGGTGGCCCACAGACAGCCAGTGCGCCTGGGGAGTTCCATCAAGCTACCATGCTCTGTGGAGGGAGACCCTCCACCCCTCATCATGTGGACCAAGGACGGCCGCAACATCCACAGCGGCTGGATCCGCTTCCGCATCCTCCGCCTGGGCCTGAAGATCAAGGAGGTAGAGGCCGAGGATGCTGGAACCTACGTCTGCAAAGCCACCAATGGCTTCGGCAGCGTTAATATCAACTATACCGTCATTGTCATCGATTACTCTGGCGCTGATAAGACTGGGCCAGGGGTCCCTGGTGGGGTGGACTCAGAGTATGGCCCTGACGGCCTATCAGGAAAACTAGTTCGTCCCCGTTTCACCCAGCCTGCTAAAATGAGGAAGCGTGTGATCGCCCGGCCCGTCGGGAGTTCTGTGCGGCTGAAGTGTACGGCCAGCGGTAACCCTCGGCCAGACATCGTGTGGCTGAAGGACGACAGGCCACTGACGGAGAGTGAGGTGGGCGAGGGGCGCCAGAAGAAGTGGACCCTGAGCCTGAGGAACCTGACCCCGGAGAACAGCGGCAGGTACACCTGCAGGGTCTCCAACCGAGCCGGAGAGATCAACGCCACCTACAAAGTGGAGGTCATACAGCAGACCAACTCCAAGCCCATCCTGACAGGCACTCACCCAGTCAACACCACAGTGGACTACGGTGGGACTACCTCATTCCAGTGCAAAGTGAGGAGCGATGTCAAACCCGTCATCCAGTGGCTCAAGCGTGTGGAGTCCAACGAGGAGAGTCGGTACAACTCCACCATTGAGGTGGGCGACCATCACTTCGTGGTTCTGCCCACGGGAGAGGTGTGGTCACGCCCTGATGGCTCCTACCTCAACAAGCTGCTCATCACCCGTGCCAAGGAGGAGGACTCTGGCATGTACATCTGTCTGGGCGCCAACACCATGGGCTACAGCTTCCGCAGCGCCTTCCTCACCGTTCTGCCAGACACCAAGCCACCCATCACCCCGATGTTCACCCCAGCCTCCAGCCCCCTCCCTTGGCCTGTCATCATTGGCATCCCTGCTGGCATGGTGTTCATCTTTGGTACAGTGCTGCTGTGGTTCTGCCAGAGTAAAAAGCACTGTTCCCCAACCAGCACTGCATCTGCCCAGGTCCTGCAGGCCTCCCACCGGCTGCCCTACCGGGAGAGGGACAGGAGCTTTGTGGCCCCTTCCTCCAGCCCAGAGAAGGACTGCCTGGGCTCCATAAACTATGAGGAGTATCTGGCTCAGCAGCAGCTTCTCCTCACTCAAGGGGGCTCTGCTCTCCCCCCCAAAATCTATCCCAAAATCTACAATGAcatccacactcacacacactcccacgtGGACGGGAAGGTGCACCAGCACATTCACTTTCAGTGTTAGCCATGTGCCAAATGTTGTCCCCCTCTCTGCGCCTCTAAAGGATTGCATCGTAAAGCGAAGGTCTGAGCTTTGGACTGAACCTCAGAGAACAGCTCTCTGGTTAAACACATCTGGGGCTGCTCTTTGAACTGTCACCTTGCCTGTGTTAGATCTTGATCTAACTGGGGCTTTATAATGATCATTCAGTACTGTACAACAGTGAAATTAAGGTGATGGTACATGAGCAGTTTTAGAGGTTAGTGCATAAATGGCTGCCCTAGTGATTTCTCAACTAAAATAACATCTTCCAATGACAATGTATGGTTTTTACTGTACCTGCAAACCTGCCTGGTCCTTGGTGCTACTTTTTTTCATATCAAAACCACTGAACCCTAATGTGCACTTAAATCACCAAAAGATTCTGCAATGCGTTAAAGGCAGCTATTCAGACTTACTGAGAGTGCATATCCATCAGTAAATACATAAATAATCCATCATTAACTTGTTTACCCATATCAACTAACCAACAAGGATTAGGGTCAGTTTTGACCTTTACCTCTTATGTTGGGTACAAGATACAGTACTTAAGCTCTGCTAGGTGATGTTGAAGGCGGTATGGAATACAATACAAAAGGGCTGGTATTACGCTCATACTCAGGTAGCCCCTTTGATTTTGATAAATGTTTCTTTATTGTTCAAATGCACATCCATTTAACCCTGACCACTATTGATGTGCCACCAATAATCCTGTTTTTCAATCACAAAAAAGGCAATATGAAAATACATTGTTAGCATTGATTTGGTATGTGAATCATGTCCATATCAAAGACTGCAAATAGAATATTGTCCCAATGTTGACTGGACTCGCTAAATATCATTGCCAGAATCCAAACGTTACCACCACTAGCCTTTTGTGTTTTGTAGAATCCTTGCAAATATCCCGTGTTGCATTGAATACATAGTCCGCAGTCTAATTCAACCACATTTTAGATGTCATGGAGACTATTTATTTTTAAAAGTCAGGCATTTTACATGCATTTAGATTTTTTCAAAAGGTACATTTAATAAGGTTCTGTAGTTGCAATGTAATATGAAAGACAATGCCAATAAGGATAATCATAGTTTATGCAAGTACTTATACACAATTGGTTGTTTGACAATCTTGTATGATATACCCATTAAAAAAGTTGATTTGATAAAAGGACATGCAAATAGATTATTTGGTTCATGGCCTCAATTCTTTACAGGAACTTGGTTGAGGCCTCAATTATAAAAATCAATCTATACTATGAATGACCTCTGAAAATGAGAATTGTAAAAAGCCTCCAATCAGCCCACCGGCTTAAAACCCCATAGGCTTCCACTGGGAATGAAGGGATGGGTTCAGTGACCGTTAGCTGCCCTGCTAGGTAAGGACCATTAGGAGGCCCCTACAAAAGGCAGGTCAGCTTTCTTCCCGACATGGCTGGAAGAGCCTAGTCTACACAGGGTGATTCAGAGGGCAGCCAGCAAAGGGCCAGTGGTGCTGGaatagatacagacagagatagaaagtGCTCTCACAGGAGTGATGGCCCTTGCAAGAGTACACCGACTAGCATCGCTCCCATTTAAGAGTGAATCTagcccttctcctcccctctgcccCACACTACCACCTCATTCAACTCCAATCTAGGTAGGATTTCCTTTCACCATTTAGGAAGTGCATTGTCCTGGTCTGGGAGTGATGTGACAGAACCCTGTGATTGCTCAGGGAAGAAGGGGAGCATTGTATCAGGGTAGCTTGTTTTGTTGTAAGCATTGTGGAACGGGATGAGCTTTGGTTCTGGAGACAAGAGGCTATTGAAATGTTTTAACAGCACATCACTAGAAGAATCTATGGAGGTACTTTTAGCTACTGTTCGGAATAACTTGTACAAATGTCACTGCTATGCTCATCAGAACATGCAATGAATGCACGAAACCAAAAACTCAAAATTACCTTTGCAAAGACTACACTCCAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954811.1 True 3887 mRNA 0.47 7 40811439 40857717

Neighbor

gene id symbol gene type direction distance location
LOC110497852 NA coding downstream 7134 40789591 ~ 40804305 (-)
tdrd9 LOC106598466 coding downstream 23038 40757564 ~ 40788401 (-)
LOC110498350 NA coding downstream 112172 40689096 ~ 40699267 (-)
LOC110497845 LOC106598670 coding downstream 136483 40666686 ~ 40674956 (-)
LOC110497844 LOC106598722 coding downstream 168060 40619452 ~ 40643379 (-)
LOC110498351 LOC106598081 coding upstream 955 40858672 ~ 40920155 (-)
LOC110497855 LOC106597482 coding upstream 93239 40950956 ~ 40959546 (-)
LOC110497858 chmp3 coding upstream 102651 40960368 ~ 40965227 (-)
LOC110497861 LOC106597151 coding upstream 136286 40994003 ~ 41033626 (-)
LOC110497863 LOC106596965 coding upstream 195149 41052866 ~ 41080347 (-)
G1624817 NA non-coding downstream 130028 40681143 ~ 40681411 (-)
G1624781 NA non-coding downstream 216350 40594832 ~ 40595089 (-)
G1624780 NA non-coding downstream 217175 40594043 ~ 40594264 (-)
G1624923 NA non-coding upstream 46921 40904638 ~ 40905362 (-)
G1624954 NA non-coding upstream 111816 40969533 ~ 40969797 (-)
G1624936 NA non-coding upstream 192589 41050306 ~ 41051596 (-)
G1625032 NA non-coding upstream 263134 41120851 ~ 41122447 (-)
G1625067 NA non-coding upstream 338928 41196645 ~ 41196974 (-)
G1624737 NA other downstream 179701 40630578 ~ 40631738 (-)
G1624738 NA other downstream 181231 40629765 ~ 40630208 (-)
LOC110497838 trmt5 other downstream 263817 40467344 ~ 40547622 (-)
G1623175 NA other downstream 1129910 39675439 ~ 39681529 (-)
LOC110497865 LOC106611002 other upstream 286390 41144107 ~ 41162883 (-)
G1625066 NA other upstream 336716 41194433 ~ 41194759 (-)
G1625428 arf6 other upstream 988538 41846255 ~ 41850433 (-)
G1626105 NA other upstream 1397518 42255235 ~ 42255797 (-)

Expression

LOC110497850(LOC106598245) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

LOC110497850(LOC106598245) Expression in each Bioproject

Bar chart with 21 bars.
LOC110497850(LOC106598245) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network