LOC110497858 (chmp3)


Basic Information

Item Value
gene id LOC110497858
gene name chmp3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 40960368 ~ 40965227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574290.2
ATCACTTCAGTAGGGTGGAGCATTGACGTATTGGAACGTGGCCTGGGAGGCGAAGTGGCGTAGCTTGGATCCGAAAGTGGTAGAGGGTGTATGCTAATGTTTCTGTTGTGTTCTGTATTACCAGTTTAGCTAGGTTAGCTAACGTAATCGTTGTAATGAAAATGGGACTGTTCGGGAAAACACAAGATAAACCACCAAAAGACTTGGTAAATGAATGGTCACTCAAAATCAGGAAAGAGATGAGAGTGATTGACAGACAAATTCGAGACattcagagggaggaggagaaggtaaAGAGATCCATCAAAGATGCTGCTAAAAAGGGACACAGGGACGTGTGTGTGGTTCTTGCAAAAGAGATGGTCCAGTCGAAGCGTGCAGTCAGCAAACTTTATGCCTCCAAAGCCCAAATGAACTCTGTACTCCTCAGCATGAAGAACCAGCTTTCTGTATTGCGTGTAGCTGGCGCCCTTCAGAAGAGCACAGAGGTCATGAAAGCCATGCAGAGCTTAGTGAAGATCCCAGAGATCCAGGGCACCATGAGGGAGCTGTCCAAGGAGATGATGAAGGCTGGTATCATAGAGGAGATGCTGGAGGATACCTTTGAAAGCATGGAGGATGATGAGATGGAGGAGGCAGCAGAGGCAGAAGTTGATAGGATCCTCTTTGAGATCACAGCAGGCGCCCTTGGCAAAGCGCCTAGCAAAGTCACAGACGCCCTACCTGAAATGGAGCCTCCTGCCGCAGCCTCAGAGGATGAGTCGGAGGAGGACATTGAGGAGATGCAGTCTAGACTGGCAGCCTTAAGGAGCTAAGATTGAGCTTTGACTGCTTTTAGTCCCATTAAAGTATTTTTGCCTGCTCAAGTATGAACAAAGACAATTTTGGTCTAGGGTTAATCTAGTCTCTTCTCAAACATATTGTCTCTTTCTTTCACATTATTGTTTTTGATTAGCTTTGGGCTGAGAACTTTTGAATGCTTAGGGCTAAATAACATATCAGATCTGTTCTTATGAAAGTTGGCTTTTATGACCTTGCATATAATCTGGGTAACCCTAGAAACCTACCCAATGTTGCGAAAATCTATATTAATCCCAAGATCGCTGAAAGAATGCTCATGCCTATCTAAAGTGATGAGTGTGGTCTGATTATTTTGGGGAAGCTGAGGCTTCATCCTGCAATAGGGTGGATTAACCACCCACTGGGCGAAAacaggttgaatcaacgttgtttctacATCTAATCAATGAAATTACTTGAACCAACATAGAATAGACGTCGagctgacgtctgtgcccagtgggcagagACTTACTCTGAGCCGGTCACTGACATATCTAATCCGTAATGGAAATGTCTTGCTCTACATTGCGGCATTAAATGAGTGACTCATCAAATTTTAGATTTCATGAAACTTTAATCCATCACTACTCTGATCTAGTTCTGAAATCTAAAATGTAAAACAATATAcattgagtataccaaacattaggaacaccttcctaataaggAGTTacaccccccttttgccctcagaacagcctcaatttgtcggggcatggattccacaaggtgttgaaaacATTCCATGCTTCCCACAGtagtgtcaagttagctggatgtcctttggttgctGGACTATTCTTGATTCACACGGGAAacggttgagcatgaaaaacctagcagcgttgcagttcttgacacaaactggtgtgcctggcacctactaccataccctgttcaaaggcacttcaatattttgtctttcccattcaccctcttaatggcgtacatacacaatccatgtctcaattgtcttaaggcttaaaaatccttatttatcTTGTCTCCTCCCTTAATCGGCACTgatttgaagtagatttaacaagtgacatcaataagggatcatagcgttcacatagattcaccttgtcagtctgtcatggaaaagcaggtgttcttaatgttttgtacaatcaatGTATTTCATTTATTCATTTGAAACACAGGATCTAAAAAGCAAAGTTATCTGTACAGTGCATATATCTATTTTCTTTATATAATGTTGTTTGGAGGGGTAAAAAAAGGAATGCAAATTCTAACCGATTTTGGACGTTGAAATCGTGCTTCTTTAACTGTGTATTGTTGTCCTTAAATTTGTTCTGCTTATTCAGTAAAAAATCTGATTGGTTAGTCTCGTTTCAGATCCTGTGTGTTATGGGTTGTTTTTTTTCTGTGCATACTTTTGTTTTTTATGTGGCCAGGAAATTATGGAAATAAACATGAATGATTTTACTGTT
>XM_036954817.1
GAAGTGGCGTAGCTTGGATCCGAAAGTGGTAGAGGGTGTATGCTAATGTTTCTGTTGTGTTCTGTATTACCAGTTTAGCTAGGTTAGCTAACGTAATCGTTGTAATGAAAATGGGACTGTTCGGGAAAACACAAGATAAACCACCAAAAGACTTGGTAAGGGAAGGCTTCTGGTGAGGGGCGACACGAGCTTGACAGCTAGCCAAACAACTAATTCTAAGCTAGGTAAATGAATGGTCACTCAAAATCAGGAAAGAGATGAGAGTGATTGACAGACAAATTCGAGACattcagagggaggaggagaaggtaaAGAGATCCATCAAAGATGCTGCTAAAAAGGGACACAGGGACGTGTGTGTGGTTCTTGCAAAAGAGATGGTCCAGTCGAAGCGTGCAGTCAGCAAACTTTATGCCTCCAAAGCCCAAATGAACTCTGTACTCCTCAGCATGAAGAACCAGCTTTCTGTATTGCGTGTAGCTGGCGCCCTTCAGAAGAGCACAGAGGTCATGAAAGCCATGCAGAGCTTAGTGAAGATCCCAGAGATCCAGGGCACCATGAGGGAGCTGTCCAAGGAGATGATGAAGGCTGGTATCATAGAGGAGATGCTGGAGGATACCTTTGAAAGCATGGAGGATGATGAGATGGAGGAGGCAGCAGAGGCAGAAGTTGATAGGATCCTCTTTGAGATCACAGCAGGCGCCCTTGGCAAAGCGCCTAGCAAAGTCACAGACGCCCTACCTGAAATGGAGCCTCCTGCCGCAGCCTCAGAGGATGAGTCGGAGGAGGACATTGAGGAGATGCAGTCTAGACTGGCAGCCTTAAGGAGCTAAGATTGAGCTTTGACTGCTTTTAGTCCCATTAAAGTATTTTTGCCTGCTCAA
>XM_021574291.2
tagactttacagtgaaatgcttacttacgagcctctaaccaacaatgcagttttaaaaaatacggataagtAATAAGTAATGATCAGGGTGTTACAATTAGCGTACATCTACTTGGCCTATCTCTGATATAGTTATATGCTTTGGCCAGGGTCTATTGATTTAAGTAGACGAACGACCTTATCATTTTAAATATTGAATAAACTAGCGCAACATTAGTTTCATGCCCACAGGACGCATATACGTTTTGACCGCATTTCCCCGTACTTGGCGTATGTAGTGCTTCGCTTTTCAACTTGCTAAAAACTAACTAGTTGGAGTCAGTGTGTGTACTTTTGTTTGTACCTCGCTACAGTGAAACAATGCACAAGTAGGACATATTGAACGCATATGGTACACATAACGCACCGTAGCCGAGCGCGGCACCCCCAACGTAGCGTTCCGGACTGCTCTATTGAAAATGAATGACTTCCGCCAGGTAAATGAATGGTCACTCAAAATCAGGAAAGAGATGAGAGTGATTGACAGACAAATTCGAGACattcagagggaggaggagaaggtaaAGAGATCCATCAAAGATGCTGCTAAAAAGGGACACAGGGACGTGTGTGTGGTTCTTGCAAAAGAGATGGTCCAGTCGAAGCGTGCAGTCAGCAAACTTTATGCCTCCAAAGCCCAAATGAACTCTGTACTCCTCAGCATGAAGAACCAGCTTTCTGTATTGCGTGTAGCTGGCGCCCTTCAGAAGAGCACAGAGGTCATGAAAGCCATGCAGAGCTTAGTGAAGATCCCAGAGATCCAGGGCACCATGAGGGAGCTGTCCAAGGAGATGATGAAGGCTGGTATCATAGAGGAGATGCTGGAGGATACCTTTGAAAGCATGGAGGATGATGAGATGGAGGAGGCAGCAGAGGCAGAAGTTGATAGGATCCTCTTTGAGATCACAGCAGGCGCCCTTGGCAAAGCGCCTAGCAAAGTCACAGACGCCCTACCTGAAATGGAGCCTCCTGCCGCAGCCTCAGAGGATGAGTCGGAGGAGGACATTGAGGAGATGCAGTCTAGACTGGCAGCCTTAAGGAGCTAAGATTGAGCTTTGACTGCTTTTAGTCCCATTAAAGTATTTTTGCCTGCTCAA
>XM_036954815.1
gcgccgaatacaacagTGAAACAATGCACAAGTAGGACATATTGAACGCATATGGTACACATAACGCACCGTAGCCGAGCGCGGCACCCCCAACGTAGCGTTCCGGACTGCTCTATTGAAAATGAATGACTTCCGCCAGGTAAATGAATGGTCACTCAAAATCAGGAAAGAGATGAGAGTGATTGACAGACAAATTCGAGACattcagagggaggaggagaaggtaaAGAGATCCATCAAAGATGCTGCTAAAAAGGGACACAGGGACGTGTGTGTGGTTCTTGCAAAAGAGATGGTCCAGTCGAAGCGTGCAGTCAGCAAACTTTATGCCTCCAAAGCCCAAATGAACTCTGTACTCCTCAGCATGAAGAACCAGCTTTCTGTATTGCGTGTAGCTGGCGCCCTTCAGAAGAGCACAGAGGTCATGAAAGCCATGCAGAGCTTAGTGAAGATCCCAGAGATCCAGGGCACCATGAGGGAGCTGTCCAAGGAGATGATGAAGGCTGGTATCATAGAGGAGATGCTGGAGGATACCTTTGAAAGCATGGAGGATGATGAGATGGAGGAGGCAGCAGAGGCAGAAGTTGATAGGATCCTCTTTGAGATCACAGCAGGCGCCCTTGGCAAAGCGCCTAGCAAAGTCACAGACGCCCTACCTGAAATGGAGCCTCCTGCCGCAGCCTCAGAGGATGAGTCGGAGGAGGACATTGAGGAGATGCAGTCTAGACTGGCAGCCTTAAGGAGCTAAGATTGAGCTTTGACTGCTTTTAGTCCCATTAAAGTATTTTTGCCTGCTCAA
>XM_036954816.1
CCTGgcggggggtggagacaagcacaagacatgTGAAACAAAacgtattagtcacatgcgccgaatacaacagGTAAATGAATGGTCACTCAAAATCAGGAAAGAGATGAGAGTGATTGACAGACAAATTCGAGACattcagagggaggaggagaaggtaaAGAGATCCATCAAAGATGCTGCTAAAAAGGGACACAGGGACGTGTGTGTGGTTCTTGCAAAAGAGATGGTCCAGTCGAAGCGTGCAGTCAGCAAACTTTATGCCTCCAAAGCCCAAATGAACTCTGTACTCCTCAGCATGAAGAACCAGCTTTCTGTATTGCGTGTAGCTGGCGCCCTTCAGAAGAGCACAGAGGTCATGAAAGCCATGCAGAGCTTAGTGAAGATCCCAGAGATCCAGGGCACCATGAGGGAGCTGTCCAAGGAGATGATGAAGGCTGGTATCATAGAGGAGATGCTGGAGGATACCTTTGAAAGCATGGAGGATGATGAGATGGAGGAGGCAGCAGAGGCAGAAGTTGATAGGATCCTCTTTGAGATCACAGCAGGCGCCCTTGGCAAAGCGCCTAGCAAAGTCACAGACGCCCTACCTGAAATGGAGCCTCCTGCCGCAGCCTCAGAGGATGAGTCGGAGGAGGACATTGAGGAGATGCAGTCTAGACTGGCAGCCTTAAGGAGCTAAGATTGAGCTTTGACTGCTTTTAGTCCCATTAAAGTATTTTTGCCTGCTCAA

Function

symbol description
chmp3 Predicted to be involved in endosome transport via multivesicular body sorting pathway; late endosome to vacuole transport; and protein transport. Predicted to act upstream of or within vacuolar transport. Predicted to be located in cytosol and late endosome membrane. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Orthologous to several human genes including RNF103-CHMP3 (RNF103-CHMP3 readthrough).

NR:

description
charged multivesicular body protein 3-like isoform X2

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0031902 late endosome membrane cellular_component

KEGG:

id description
K12193 VPS24, CHMP3; charged multivesicular body protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574290.2 False 2300 mRNA 0.42 6 40960368 40964190
XM_036954817.1 False 884 mRNA 0.48 6 40961802 40964139
XM_021574291.2 False 1136 mRNA 0.46 6 40961802 40965148
XM_036954815.1 False 799 mRNA 0.49 7 40961802 40965170
XM_036954816.1 True 733 mRNA 0.49 6 40961802 40965227

Neighbor

gene id symbol gene type direction distance location
LOC110497855 LOC106597482 coding downstream 822 40950956 ~ 40959546 (-)
LOC110498351 LOC106598081 coding downstream 40213 40858672 ~ 40920155 (-)
LOC110497850 LOC106598245 coding downstream 102651 40811439 ~ 40857717 (-)
LOC110497852 NA coding downstream 156063 40789591 ~ 40804305 (-)
tdrd9 LOC106598466 coding downstream 171967 40757564 ~ 40788401 (-)
LOC110497861 LOC106597151 coding upstream 28776 40994003 ~ 41033626 (-)
LOC110497863 LOC106596965 coding upstream 87639 41052866 ~ 41080347 (-)
LOC110497865 LOC106611002 coding upstream 180937 41144107 ~ 41162883 (-)
LOC110497867 LOC106596550 coding upstream 207806 41173033 ~ 41189809 (-)
LOC110497872 LOC106596263 coding upstream 234618 41199845 ~ 41204084 (-)
G1624923 NA non-coding downstream 55006 40904638 ~ 40905362 (-)
LOC110498350 NA non-coding downstream 262659 40689096 ~ 40699267 (-)
G1624817 NA non-coding downstream 278957 40681143 ~ 40681411 (-)
LOC110497844 LOC106598722 non-coding downstream 332733 40619452 ~ 40643379 (-)
G1624781 NA non-coding downstream 365279 40594832 ~ 40595089 (-)
G1624954 NA non-coding upstream 4306 40969533 ~ 40969797 (-)
G1624936 NA non-coding upstream 85079 41050306 ~ 41051596 (-)
G1625032 NA non-coding upstream 155624 41120851 ~ 41122447 (-)
G1625067 NA non-coding upstream 231418 41196645 ~ 41196974 (-)
G1625105 NA non-coding upstream 303592 41268819 ~ 41272024 (-)
G1624737 NA other downstream 328630 40630578 ~ 40631738 (-)
G1624738 NA other downstream 330160 40629765 ~ 40630208 (-)
LOC110497838 trmt5 other downstream 412746 40467344 ~ 40547622 (-)
G1623175 NA other downstream 1278839 39675439 ~ 39681529 (-)
G1625066 NA other upstream 229206 41194433 ~ 41194759 (-)
G1625428 arf6 other upstream 881028 41846255 ~ 41850433 (-)
G1626105 NA other upstream 1290008 42255235 ~ 42255797 (-)

Expression


Co-expression Network