LOC110497865 (LOC106611002)


Basic Information

Item Value
gene id LOC110497865
gene name LOC106611002
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 41144107 ~ 41162883 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574306.2
CTCATCGTCTTCTAGCCGCTTAACGGGATAGACCGGTGTGAACATTATTCTTACCATTCATAACTGTTATTTTCTTGCATACTGGACATTTCGACCTACGTGTCTCGATAAACCTCTCTCGTCTGATCAACTTTTCCTACCATTCGTGGTATTCGAGAATAGGTCGGAGCCTACTCGCAGTCAAGTATGAGCTGAAAGGAAGGGCACTACGCGAGGACGTCAAGTGCGAGTTACACTTGCACTGAATGCGCGATGGTACCGCGAGGCTCTCCGCCTAATCTATAGTCTTTAGGCAGAGGGATGCATCAGTTTAACCCTTTGCTCTGCTCTCCAGAGTTGCATATATTTGTAAATACAGTAAGATTTATTAAATAAGCTGAGGAAATGTGTTACGGGGCTGCAGCTTTTTTGGGGAGTTGTGTTGGACAATAATTCAAAGGATATTTTTTTCATAATTTGCTCAAACTTCGATGGCTTGAGTATTTGCATACATGCATGCTGACAGGCAAGAATGTAAGGTAGCCTATGTCCCGTTTACCGCTCTCACATCACACGGAGTAACGGAGCATCGGTTGGATTCACAGCGCTGGACATCGACCTATAGCGCATTTATTCGGATTGGGTTTGAGTGCCCAGATAAATAACTTTAGATATATGAATTATTGGGATTGCCTGGTCACCTGCTTTCCTTGCCTGTCATATGCCAACGACAACTGAAATTCAAGAGCAAAATTAATATGGCATAAACTATTTCTGGAGACGCCAGTCACAGATATCGCCGACGACTTGGATAGGGTGAATGAGAATTTCCCAAACGGTCCAATCCTATGCATACCGTGCTTGTTTACTCGCTACGCTGTCTAGTGTCTTCGAGAAGAGCTCAGGAGGAATGCTGGTCCAAGATCTAATACCATTTATTTTAAGTTTTTGGCCTCTTCTTTTCGGTCAGTGCATTCTATCGTTGGTTTTACTCTCATGCCAGGGTGAACTCCAGAGGTCATGCTCACAGACTGTAGCTGAGAAAGTGAGCGAACACTGCCAGTTGGCATGCCAGTGTAGAAGctaccctccccttcctcccccgcCTCCGCCCCCACCTCCCCCACGGCTACTGTTGGCCACAGTGGTTGAGTCCCCTCTGCCGCTGTTGAGGCCATGGTGGATGGAGATCCTAGTGCTTGGAACAGTGGGCTGTGCCTCAGCTGTTTTCCTCCTTTCAGCCATGATCATCTGCTACAAGGCCATAAAGAGGAAACCACAACGGAAAGAGGAGAACGGGATGAGTCGTGGAGAGTATGCCATGAGTGCACGCAACAAGAAAGCCATGGGCCCCAACAACACTGTGGTGTAGACTGTTCACTGACAGGAAGAGGAATTGGCATAACCAtaaccccccaccaccaccaccaccaccatccatcCTACCCAAAA
>TU1859566
TGGCTTGAGTATTTGCATACATGCATGCTGACAGGCAAGAATGTAAGGTAGCCTATGTCCCGTTTACCGCTCTCACATCACACGGAGTAACGGAGCATCGGTTGGATTCACAGCGCTGGACATCGACCTATAGCGCATTTATTCGGATTGGGTTTGAGTGCCCAGATAAATAACTTTAGATATATGAATTATTGGGATTGCCTGGTCACCTGCTTTCCTTGCCTGTCATATGCCAACGACAACTGAAATTCAAGAGCAAAATTAATATGGCATAAACTATTTCTGGAGACGCCAGTCACAGATATCGCCGACGACTTGGATAGGGTGAATGAGAATTTCCCAAACGGTCCAATCCTATGCATACCGTGCTTGTTTACTCGCTACGCTGTCTAGTGTCTTCGAGAAGAGCTCAGGAGGAATGCTGGTCCAAGATCTAATACCATTTATTTTAAGTTTTTGGCCTCTTCTTTTCGGTCAGTGCATTCTATCGTTGGTTTTACTCTCATGCCAGGTAGGTATTGTGTTCGTGCGCGCCTATTGTAATTTTACGCATGGCGAGTTATTACACAAACGTAAGTGGAGCTCTATTTTAGGGTGATTTTGGTAATAGCAGCTTTTGATCCTGCTCTTGTCACATTTTTATGTTATATCAAATATATACTTTAAAAAAACACGCTATGTTTATTGATGTGCCTCTTGCCTTTGCACTCTCACACTATTGCACCAGCTATGGAGAAGTTTTGAGTGGTAATCAGCTGTAGTTCCCAGTCAGTTGATGCAATATTTTCATGTGAAATATACTATTAAGTGATTTGttacacacgcacccacacaagcacacacacaggaaggcagGCAGAAAGTGGTAGGCTCCTGGAAAGTAGCACATAGAGAGCTATAGATTCCCATCTGGAATATGATGTTGAGGATGAGCATTCTAACCCCTGGCCCTTGTTGCTGCCTACAGAGAGCAGTGAGCTGGCTGTGCAGGCGCGGGATGTTGCCAAGGTTCATGTGTGATGTGATCTGCTCGAGTTTCCaagtccacccacacacactcctcaGGGCAGCCTACTGCCCACTGGTGGTGGGTGGTTTCTCTGAGGGAGAGGGTTGCAGCCGTAGGCATGGTACCATCCAGTATGTCTATGAATGCAGCTTCTGGGGAAGCAGTATAGTAGAGGGATATGATCTTGGGTACTACTGAGTGGAAATCCAGAGGTTTCCAAACCACAAACCCTGACGGTTTAGTTGCTGATGCACTAGCACTAATGGTGCAGGACATTTCAgtaagtaggctacagtaggcatATATCAACATTCTAAGCTCTCATCTCGCAATCATTTTTAATCATTAAAAAGGCAGACTTTTTCAGAAATATGTCTTTTGGGGGTGGATAATGAAAGTAAATATTATTGAATGCATAATGAATAGtgaaactctttctctctctctctctttctttctctctctctctctgtgtccataAGGGTGAACTCCAGAGGTCATGCTCACAGACTGTAGCTGAGAAAGTGAGCGAACACTGCCAGTTGGCATGCCAGTGTAGAAGctaccctccccttcctcccccgcCTCCGCCCCCACCTCCCCCACGGCTACTGTTGGCCACAGTGGTTGAGTCCCCTCTGCCGCTGTTGAGGCCATGGTGGATGGAGATCCTAGTGCTTGGAACAGTGGGCTGTGCCTCAGCTGTTTTCCTCCTTTCAGCCATGATCATCTGCTACAAGGCCATAAAGAGGAAACCACAACGGAAAGAGGAGAACGGGATGAGTCGTGGAGAGTATGCCATGAGTGCACGCAACAAGAAAGCCATGGGCCCCAACAACACTGTGGTGTAGACTGTTCACTGACAGGAAGAGGAATTGGCATAACCAtaaccccccaccaccaccaccaccaccatccatcCTACCCAAAATGCAACAATTCCCTCTTACCTAGAACGCCACAGGGGTTGACCTGTTTAAAACACATTAACGCCTTTCCTTCTCTCTTAGCAGGTCACCTGGATGAAAGGAAACTTCCAGATAAAGGAAAGTAGTGAAAAGAACATAAAAAGCAAAAACATTGAAGTGGATTCAGAGAACTAGTAATAAAGTGAATTGAGGACTTCACCAGACTGAACATCATGTTGTCAACACGAAGTGTAATTGACAGGAGGATGGTTGACTGCTAGGCTACCAATCTCTACAGCTCCGCAATTCTTACAGGCAACTATAATGTAGGAACAGACGTTGAAGGACGGCAATGGGATAGGAGGTTGCGAGGACCAAATCATGAAGAAATTGTGCATGCAGGTTTTACTCTTTGGGCTGTCTCTCATCTATGCTCCTCAGACCCTTTTTCATATTTAAAGCAGAATTTTTACAACACTGTCACAGTTGCAGGTGTGATTTGGGATGTATAGTGATTATCTGACTatgcaattaaaaaatatatatacaggagTGAAGTAAAAGAAGGGGATCAAGTCAGTTCCTATGTTCCATACCAACAACACAGCTGAGAactggattttatttatttgttcatTTATGTATTTATTGTCTGCGTATGAATTCCATTTTAATGATttgaaatgtgttattttttatgaattattGAATAATCATACCATTCATTTGTAATGCTTTGATGCTTTAAGCCCACCAcgagaggttggtggcaccttcattggggaggaggggctcatggtaacggctggagcggaatcagtggattggaatcaaatacatcaaacacatgatttccattttttttaaatgccattCCATCttctccgttccagccattattacgaGTCAGCCTCCACTGAAGCCCACTGTTCATTTGCTACTGACACAGTAAACACTTCAGCTTGCTCTGCAATGAGTTTTGGGTATCAATTCTTCATCTCTTGCTGTTTGACATGCCTTTTTCTCTTCCCCTGTGACTTCAGCGAATATGATGGGGGTTTGATGGGTGTTTtgagtttgtgagtgtgtgctgTCGGACCATGCTTTTAGCAGCTTGTTCTGTACTACCCTCGAGTCTTATCACAGGTGAATGCCCCCGACAATACTAACGTCATATTACATTTTGTTTTGTCACATCTCAATGGTTAGACAGCCAGGGGAGGCAGTGGTGGACAGTGAAAAGCCCTTTGCCATGTTCTGATGTGATTTTGCAGTCTTTAATTGTTCCACCTTTCAGCAAGGGGAGAACCCATCACTATAGAAACAGTGCACATGAGCCCAGGGCTCAAGTGCTGTGTGGTGGAGGACAGGATTCTAAACAGAGGCTAATCCGGATATTAAGTTGCAGAGGATGGCCTCAAAAGGGACATGTGACTCACACTCACAGGCATCATCAACATCCTTCTGCTATAAACAGTACACAGTTGATTTAAAGCATCAATCAATTATTAAGCTACTTTTTGGCATAGGTGCAGTTCatctgtatataatgtgtgtttgagtgtgtgtgtgtgagagagagcacaATAGATGGATGTCTGGCAGTATCTCTGAAATTTTCCATTACTGTTGAATTTTGTAAACACAGACCTTGCATTGTGATTTGCATACAGGGGTGGACTGGGACCAAAAATTGGCCCTGTCATTTCTAACACACCAGCCCATTTCTTTCCTCGAGGCCCACACATTTGCCCATTGTTTTCCCTGAGGACCCCATTATTAgccaaaaaaatctaattttgtgcAAGAATCACGTGGCAAAAAATGGagcagcccatctggcatttgcctgaAATGCCAGATGGTCAGTCCACCCCTGCATGCATAGGTATTACCATATACCCTATAATGTACCCAGATACTGAAAATGCGTCACTAATACTGTACATTGAGGGAAATGATCATGGATGCATGAATGTAAATATTGATATTTAAAAATATCTGCCTTCTGGACTGTAATTACATGTACAGTGTAACAGAAAATATGTTTATACATAGTAGAAATTAAACAATGTGCTAC

Function

NR:

description
proline-rich membrane anchor 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574306.2 False 1431 mRNA 0.47 4 41146164 41162883
TU1859566 True 3997 TUCP 0.43 3 41144107 41162412

Neighbor

gene id symbol gene type direction distance location
LOC110497863 LOC106596965 coding downstream 65817 41052866 ~ 41080347 (-)
LOC110497861 LOC106597151 coding downstream 112538 40994003 ~ 41033626 (-)
LOC110497858 chmp3 coding downstream 180937 40960368 ~ 40965227 (-)
LOC110497855 LOC106597482 coding downstream 186618 40950956 ~ 40959546 (-)
LOC110498351 LOC106598081 coding downstream 226009 40858672 ~ 40920155 (-)
LOC110497867 LOC106596550 coding upstream 10150 41173033 ~ 41189809 (-)
LOC110497872 LOC106596263 coding upstream 36962 41199845 ~ 41204084 (-)
LOC110497873 LOC106596382 coding upstream 41351 41204234 ~ 41211621 (-)
c19h14orf180 LOC106595839 coding upstream 124499 41287382 ~ 41304570 (-)
LOC110497879 LOC106595751 coding upstream 170639 41333522 ~ 41335591 (-)
G1625032 NA non-coding downstream 23717 41120851 ~ 41122447 (-)
G1624936 NA non-coding downstream 94568 41050306 ~ 41051596 (-)
G1624954 NA non-coding downstream 176367 40969533 ~ 40969797 (-)
G1624923 NA non-coding downstream 240802 40904638 ~ 40905362 (-)
LOC110498350 NA non-coding downstream 448455 40689096 ~ 40699267 (-)
G1625067 NA non-coding upstream 33762 41196645 ~ 41196974 (-)
G1625105 NA non-coding upstream 105936 41268819 ~ 41272024 (-)
G1625092 NA non-coding upstream 137254 41300137 ~ 41300971 (-)
G1625118 NA non-coding upstream 146352 41309235 ~ 41309456 (-)
G1625124 NA non-coding upstream 153318 41316201 ~ 41316433 (-)
G1624737 NA other downstream 514426 40630578 ~ 40631738 (-)
G1624738 NA other downstream 515956 40629765 ~ 40630208 (-)
LOC110497838 trmt5 other downstream 598542 40467344 ~ 40547622 (-)
G1625066 NA other upstream 31550 41194433 ~ 41194759 (-)
G1625428 arf6 other upstream 683372 41846255 ~ 41850433 (-)
G1626105 NA other upstream 1092352 42255235 ~ 42255797 (-)
LOC110498355 atg2b other upstream 1302942 42465705 ~ 42480874 (-)
G1626232 LOC106611303 other upstream 1477566 42640449 ~ 42641273 (-)

Expression


Co-expression Network