vcpkmt (vcpkmt)


Basic Information

Item Value
gene id vcpkmt
gene name vcpkmt
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 41867674 ~ 41870961 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574334.2
ttggatgccaaccgccgttatACCTCATCGAAGAAGAAAAGATGGCGGAGCATACGTTACACCACAATAATTATTTTACAAGAGACGTTGAGAAAAACGACGGATCTGTCTTGAAAATCAAACAGTGCTTTAAAGGAGACGTTGGTTGTGTGGTGTGGGATGCAGCAATTGTCCTGTCAAAATATTTAGAAACTAAACCGTTGTATGATCCTTGCTCGGGCGTGAACATGTGGGCTAGCAAAAACATTCTAGAGttaggagcaggaacaggagttGTGGGCCTTATGGCAGCATCTTTGGGGGCTCAGGTTACTGTGACAGACCTCGAGGACCTGCAGTCTCTACTCCAAGTCAATATCCAAGACAACCAGGAACTTGTCAGCAGTGGATCTATCGAAGCCAAGGTACTAAAATGGGGTGAAAATGTGTCAGAGTTTCTACCACACCCACATTTTATCCTGATGGCGGACTGCATCTATTATGAACAGTCCGTGAAGCCACTGGTGGAAACCCTGAAGCACCTGGTTGGACCAGAGACCACCATCATATGCTGCTATGAGCAACGCACAGTGGGTGTCAACCCCAAAGTGGAGAAACAATTTTTTGAGTTGCTTCTACAAGACTTCCAGTCTGAGGAGATCCCTTTGAACAAGCAGGACCCAGAGTATAACAGTCCTGACATCCGCATCCTTCACATTCGCAGAGCTGTCTGAGTGAATGAGTGTCTTGTGTATATGTGGTTGTCAGGGTTGTGGTATACAAATCATTGAATTGCACTCATGTACAGTTCACATGGTAATTTAAATTGAATGGACCCCAGGGGAGAGCACTAATGTTGAAAGAACTAATTTCAAAATCCTTTATCGATATATCCATGTTGTCTTAGTATGGACTATGAGTTTTACCAGACTGTGATATTCATTGCACCATGATTCTAAAACAAATCCCAGTTAGAGGTAGACTCCACGATATGACTTGGGTgcacaaagtaaacagcataggGGGATCAATTTCCGCAGCAGCTAAGAGTGTTGAAGCGTGAGGCTaaacttctctgctgttttggtcccgtACCACGAGACGCAAACTCATACAcgtgcagatactgtgtgtgactgtgggaGCGAAGTCTTGCATCTCACTCATCGCAATATATGTGGTGCTGAACGTGGCAACGTCATTTCGCTGGGTCTACCTTTGAAAAGGAAAATAAAACATTCTCCTTCAGAACATTGTTTTTCTCATTGCAGTATTTAACTGTTGGAACACATTTGTGGGATGATTAAGTTAATTTTTAATAGAAGTTAATGAAATATAATTTTAGCTAATTAAAGTGTCATGTACAGACTATActaagttgtgtcaagttggctggatgtcctttgggtggtggaccactcttaatacacaggaaattgttgagcatgaaaaacccaggagcattgcagttcttgacacaaaccggttcGCCTGGCACGTACTACCATATCCCgatcaaaggcacttacatattttgtcttgcccattcaccatctgaatggcacacatacacaatccatatctcaatgcttaagtattctttaacctgtctcctccccttcatccactgatttaacaagtgacatccatGTCagtctggattcacctggtcagtctgtcatggaaagagcaggcgttcttaatgttttgtatactcagtgtatatcatgtTCAGCAGCAGAGTGCTAGTGTGTGGATAtagtcttcagaaagtattcataccccttgacttattccacattttgttgttacagcctaaattttaaacatttttatcACCAGTCCCCACACACTatccataatgacagtgaaaacatgtttgtagaaacattaaaacattttgtaaattaaatacagatctaatttacataagtattcacacccctgaataaatacatgctagaatcacctttggcagtgattacagctgtgagtctttctggttaagtctaagagctttgcacaactggattgtacaatatttgcatacacaaacatatttaagctctgtcaagttggatcaTTGCAGGACAGCCATTTAAGTCTTGACATcaatttttaaaaatctgatttaaaggccactcaggaacattcaatatggttttggtaagcaactccagtgtatatttggtctttgttttaggttattgtcctgctgaaaggtgaattagtctcccagtgtctgttggaaaggagACAACCAGGTTTTTCAATAGGATTTTGCCTTAGTTCTGTTTCTTATCCTAAAAACTCTCTAGTCCGTGCCGATTAAAAGCATATccttaacatgatgcagccatttttctgtacaggcttccttcttttcactctgtcaattggattactattgtggagtaattatgttgttgattcatcctcagttttctcctgtcacagccattaaactaactTTTAAAGTCA
>XM_021574335.2
acatttattggatgccaaccgccgttatACCTCATCGAAGAAGAAAAGATGGCGGAGCATACGTTACACCACAATAATTATTTTACAAGAGACGTTGAGAAAAACGACGGATCTGTCTTGAAAATCAAACAGTGCTTTAAAGGAGACGTTGGTTGTGTGGTGTGGGATGCAGCAATTGTCCTGTCAAAATATTTAGAAACTAAACCGTTGTATGATCCTTGCTCGGGCGTGAACATGTGGGCTAGCAAAAACATTCTAGAGttaggagcaggaacaggagttGTGGGCCTTATGGCAGCATCTTTGGGGGCTCAGGTTACTGTGACAGACCTCGAGGACCTGCAGTCTCTACTCCAAGTCAATATCCAAGACAACCAGGAACTTGTCAGCAGTGGATCTATCGAAGCCAAGTCCGTGAAGCCACTGGTGGAAACCCTGAAGCACCTGGTTGGACCAGAGACCACCATCATATGCTGCTATGAGCAACGCACAGTGGGTGTCAACCCCAAAGTGGAGAAACAATTTTTTGAGTTGCTTCTACAAGACTTCCAGTCTGAGGAGATCCCTTTGAACAAGCAGGACCCAGAGTATAACAGTCCTGACATCCGCATCCTTCACATTCGCAGAGCTGTCTGAGTGAATGAGTGTCTTGTGTATATGTGGTTGTCAGGGTTGTGGTATACAAATCATTGAATTGCACTCATGTACAGTTCACATGGTAATTTAAATTGAATGGACCCCAGGGGAGAGCACTAATGTTGAAAGAACTAATTTCAAAATCCTTTATCGATATATCCATGTTGTCTTAGTATGGACTATGAGTTTTACCAGACTGTGATATTCATTGCACCATGATTCTAAAACAAATCCCAGTTAGAGGTAGACTCCACGATATGACTTGGGTgcacaaagtaaacagcataggGGGATCAATTTCCGCAGCAGCTAAGAGTGTTGAAGCGTGAGGCTaaacttctctgctgttttggtcccgtACCACGAGACGCAAACTCATACAcgtgcagatactgtgtgtgactgtgggaGCGAAGTCTTGCATCTCACTCATCGCAATATATGTGGTGCTGAACGTGGCAACGTCATTTCGCTGGGTCTACCTTTGAAAAGGAAAATAAAACATTCTCCTTCAGAACATTGTTTTTCTCATTGCAGTATTTAACTGTTGGAACACATTTGTGGGATGATTAAGTTAATTTTTAATAGAAGTTAATGAAATATAATTTTAGCTAATTAAAGTGTCATGTACAGACTATActaagttgtgtcaagttggctggatgtcctttgggtggtggaccactcttaatacacaggaaattgttgagcatgaaaaacccaggagcattgcagttcttgacacaaaccggttcGCCTGGCACGTACTACCATATCCCgatcaaaggcacttacatattttgtcttgcccattcaccatctgaatggcacacatacacaatccatatctcaatgcttaagtattctttaacctgtctcctccccttcatccactgatttaacaagtgacatccatGTCagtctggattcacctggtcagtctgtcatggaaagagcaggcgttcttaatgttttgtatactcagtgtatatcatgtTCAGCAGCAGAGTGCTAGTGTGTGGATAtagtcttcagaaagtattcataccccttgacttattccacattttgttgttacagcctaaattttaaacatttttatcACCAGTCCCCACACACTatccataatgacagtgaaaacatgtttgtagaaacattaaaacattttgtaaattaaatacagatctaatttacataagtattcacacccctgaataaatacatgctagaatcacctttggcagtgattacagctgtgagtctttctggttaagtctaagagctttgcacaactggattgtacaatatttgcatacacaaacatatttaagctctgtcaagttggatcaTTGCAGGACAGCCATTTAAGTCTTGACATcaatttttaaaaatctgatttaaaggccactcaggaacattcaatatggttttggtaagcaactccagtgtatatttggtctttgttttaggttattgtcctgctgaaaggtgaattagtctcccagtgtctgttggaaaggagACAACCAGGTTTTTCAATAGGATTTTGCCTTAGTTCTGTTTCTTATCCTAAAAACTCTCTAGTCCGTGCCGATTAAAAGCATATccttaacatgatgcagccatttttctgtacaggcttccttcttttcactctgtcaattggattactattgtggagtaattatgttgttgattcatcctcagttttctcctgtcacagccattaaactaactTTTAAAGTCA

Function

symbol description
vcpkmt Predicted to enable protein-lysine N-methyltransferase activity. Predicted to be involved in peptidyl-lysine trimethylation. Predicted to act upstream of or within methylation. Predicted to be active in cytosol. Orthologous to human VCPKMT (valosin containing protein lysine methyltransferase).

NR:

description
protein-lysine methyltransferase METTL21D isoform X2

GO: NA

KEGG:

id description
K21806 VCPKMT, METTL21D; protein N-lysine methyltransferase METTL21D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574334.2 False 2460 mRNA 0.41 5 41867674 41870954
XM_021574335.2 True 2383 mRNA 0.41 4 41867674 41870961

Neighbor

gene id symbol gene type direction distance location
LOC110497882 LOC106595288 coding downstream 35836 41695855 ~ 41831838 (-)
LOC110497880 LOC106595288 coding downstream 36148 41775849 ~ 41831526 (-)
LOC110498590 LOC106595288 coding downstream 102572 41745407 ~ 41765102 (-)
LOC110498352 LOC106595507 coding downstream 172618 41562540 ~ 41695056 (-)
LOC110497879 LOC106595751 coding downstream 532083 41333522 ~ 41335591 (-)
LOC110497889 LOC107085600 coding upstream 181709 42052670 ~ 42062060 (-)
LOC110497892 LOC106593771 coding upstream 273611 42144572 ~ 42158726 (-)
LOC110498354 LOC106593417 coding upstream 301180 42172141 ~ 42173747 (-)
LOC118941476 LOC106611023 coding upstream 314240 42185201 ~ 42189497 (-)
LOC110497894 LOC106593636 coding upstream 319310 42190271 ~ 42213019 (-)
G1625380 NA non-coding downstream 183726 41683535 ~ 41683948 (-)
G1625290 NA non-coding downstream 318902 41548435 ~ 41548772 (-)
G1625287 NA non-coding downstream 321132 41546015 ~ 41546542 (-)
G1625274 NA non-coding downstream 338422 41529034 ~ 41529252 (-)
G1625266 NA non-coding downstream 353008 41514402 ~ 41514666 (-)
G1625439 LOC106594233 non-coding upstream 48277 41919238 ~ 41919952 (-)
G1625490 NA non-coding upstream 67242 41938203 ~ 41938464 (-)
G1625549 NA non-coding upstream 124494 41995455 ~ 41995928 (-)
G1625568 LOC106593970 non-coding upstream 156625 42027586 ~ 42029440 (-)
G1625571 NA non-coding upstream 166656 42037617 ~ 42037905 (-)
G1625428 arf6 other downstream 17241 41846255 ~ 41850433 (-)
G1625066 NA other downstream 672915 41194433 ~ 41194759 (-)
LOC110497865 LOC106611002 other downstream 705262 41144107 ~ 41162883 (-)
LOC110497863 LOC106596965 other downstream 787575 41052866 ~ 41080347 (-)
LOC110498350 NA other downstream 1171913 40689096 ~ 40699267 (-)
G1626105 NA other upstream 384274 42255235 ~ 42255797 (-)
LOC110498355 atg2b other upstream 594864 42465705 ~ 42480874 (-)
G1626232 LOC106611303 other upstream 769488 42640449 ~ 42641273 (-)
G1626324 NA other upstream 888333 42759294 ~ 42838434 (-)
G1627068 NA other upstream 1537766 43408727 ~ 43409109 (-)

Expression


Co-expression Network