LOC110497892 (LOC106593771)


Basic Information

Item Value
gene id LOC110497892
gene name LOC106593771
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42144572 ~ 42158726 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954845.1
TTTACGCAGTGTATTCTGGCAACGACCAGTcccaaacctttttttttttcttcagcacGGGAGTTGTATTGCTTTGGATACAGGAAGTAGAGCTGTGTAACTGTTGTCAATAAAGGGCAAAACATAAATCCAGTTGATCAATCAGTTGTCTGTCATACCCGACTGTTAGTTTGCCTGAATTGCAATTTCTACATTGCAAATCGAAGTAAAACATGTCAACGACTGCTCAACTATTCGAGGAGCCCTTTGATGCAGACGAGTACATAGAGAGGTTGGCCTGGAGAACCCCTGGAGGAGGGTCCAAAGGAGGAGCAGAGGCATTCGACCCCAAAAGGCTGCTGGAGGAGTTTGAGAACCACATAGAGGAGCTGAAGCATCTGGATGAGAAGATCCAGCGGCGGGTGGAGAAGCTGGAGCACCAGTGTCACAGAGAAGCCAAGGAGTTTGCCCACAAAGTGCAGGACTTACAGAGGAGCAACCAGGTAGCCTTCCAGCACTTCCAGGAGTTGGACGAGCACATCAGCTATGTGGCCACCAAGGTGTGTCACCTTGGTGACCAGCTGGAGGGAGTGAACACGCCCAGGCAGAGGGCTGTGGAGGCCCAGCGTCTCATGACCTACTTTAATGAGTTCCTGGATGGGGAGCTTCGCAGTGATGTCTTCAACAACCCAGAAAAAATTAAGGAAGCTGCTGATATCATTCAGAAGTTGCATCTCATAGCCCAGGAGCTGCCATTCGACAGGTTTGCAGATGTTAAGGCCAAGATTGCAAGTAAATACCACGACCTGGAGCGCCAGCTGATCCAGGAGTTCACGGCGGCCCAGCGTAGGGGCGAGATTGGCCGCATGCAGGAAGTCGCTGCGGTCCTCTTACACTTCAAGGGCTATGCACACTGCGTGGATGTATATATCAAGCAGTGCCAGGAGGGGGCGTACATGCGTAGTGATGTGTTTGAAGACACTGCACTCCTCTGCCAGCGGGTCAACAAGCAGGTGGGAGAGGTCTTCCAGAGCCCAGAGACCGTCATGGCCAAACTCATCCAGAACATCTTTGAGAACAAACTACAGGCCCACGTAAAAGAAAAACTGGATGAAACCCGCCGCTCTGATGTCGAACAATACCTCAAAAACCTCTATGACCTTTATACCAGGACAACGGCCTTGGCTTCCAAGCTGACCGAGTTCAACCTGGGCTCAGACAAACACACCTTCCTGTCCAAGCTCATTAAAAACATCTTCTCCACCTATCTGGAGAGCTACATTGAAATGGAGAAAGATTACCTCCGCACGCGCAGTGCCATGATCCTGCAGCGCTACTACGACTCCAAGAACCACCAGAAACGTCCACAGGGTGGGGGCAGTATCCAGGAGCTGAAGGAGCGGATCAGGCAGCGCACCAACCTGCCCCTGGGGCCCAGCATTGACACCCACGGAGAGACCTTCCTCTCCCAGGAGGTGGTGGTCAACCTGCTGCAGGAGACGCGCCACGCTTTCGAGAGGTGCAACAGGCTCTCAGATCCCTCGGACCTGCCTAAGAACGCCTTCTCCATCTTCCTGCTGCTGGTGGAACACCTGTGTATGGACCACATCGACTACGCACTGGAAATCGGCCTCTCCGCCATTCCCTCAGCTGATGCCAAGAATGCCAACCTGTACTTCCTGGATGTGGTCCAGCAAGCCAACACCATCTTCCACCTGTTTGATAAGCAGTTCAACGACCACCTAATGCCTCTTATCAGCTCATCTCCCAAACTGACAGAGTGCCTGCACAAGAAGAAGGAGGTGATTGAACAGATGGAGGTGAAACTGGACACGGGCATAGACAGGACACTGAACTGCATGGTGGGACAGATGAAGCACATCCTGGCTACGGAACAGAAGAAGACAGACTTCAGGCCTGAAGATGAGAACAACGTCATGATCCAGTGCACCGCAGCCTGctccaaggtgtgtgtgtatgtgagtcgGCAGGTGGAGCGTGTGCGGAAGTCCATGGATGGTAAGAACGTGGACACAGTGCTGACGGAGCTGGGCGTGCGTTTCCACCGCCTCATCCACGAGCACCTGCAGCAGTACAGCTACAGCTCCATGGGAGGCATGCTGGCCATCTGCGATGTGGCCGAGTACCGCAAAAGTGCCAAGGACTTCCGGGTTCCTCTTGTGCTGCAGCTCTTTGACACGCTCCACGCCCTGTGTAACCTCCTGGTGGTTGCCCCAGACAACCTCAAACAGGTCTGCTCCGGGGAGCAGCTCACCAACCTGGATCGGAACCTTCTGCACGCCTTCGTACAGCTGAGAGTGGACTACCGCCAGGCCAGACTGGGACGACACTTCAGCTAATGGCCCTGGCCAATGCGTCACTGTCCAGCCATCGGTCCGTCCAATCACCACGGCCTATGATTTCACAAAACTCACCATGGAAACGGAATTCAGCCAACCTGGATGGAGTCTTCACTGAGTTAGTCTTTCATTCTCATCTGCAGTAGCACCTTTTGCTTTGTCCATCCTAGAGGCCAAGAAAGACCACCGCCATTCACAGTTGGTCTACAgatagcctagaggttagagaagggtttcttaaactatgggtcgggacccaaagtgggccctgAGTTTGTGGGAGGTGGGTCGCCAGTTATGAGAATACATATATAATCAAAcactatttcttcttaatttggTTTGTTGGAGGATCACAGGAGTACGGTCAATTTCTCATTTGGATCTCGAGCTGATAAAGTTTAAGAAACcctgggttagagcattgggccagtatccgagaggtcgctggttcgaatactcgagctgacaaggtgaataATCTGTttatgtgcccttgagcatggcacttaaccctagtttgctccaggggtgcgatactactatgactgaccctgtaaaacaggGCTGTCAAACTCATTCAACGGAGGGCATAGTATCTGCTGGTTTTtggttttcctttcaattaaaacCTGGACAACCAGTTGtgaggagttccttactaatcagtgtacttgattgatgaattaaggtcaagGGAGGATGAACACCCGTGGACACTCAGCCCTCCgtagaatgagtttgacacgtgctgtaaaacaacacattttcacTGCACCTTTCACCTAAAATTTGCCCTTGACTTCTGCAACACAAATAATTTGAAATGTATATGACTCTTGTTTTGAAATACTAATCCACCAAAACATGATTGTGTCATATTACCGGTAAAATCAACCTTGGATTTCCAAGCTTTCAACTTTAACATAAAGCGACATTTTGTTTTGATTGTGCCAAATGTATATTCTGTGGCTGCACTTGTACACAGGAACAGACTTTAAAAGCTACTGCAAAGAGAAAGTTGAGCTCTTCATAGCTCAGGCCTGTCATGGCACTGACTGACTGCATACTGGAAACAGCCACCCCTCACACAGAACTCCCAGAGGAATCTACTCTCACcaacatccttctctctctcctcccgaaCCAAGCCTGCTAAAGAGCTCTGCTGTGCCTGCCAGAGAGAGTCACATGACCACCTCTCTCCGACCCCTGACCtcaagggagaggtgaggggtcaACACACTGGCTGTGATCCCAGCCGTAATCATGTCTGAGAACCACTCGGGGGTCCTGGGTGGTCCGTCTGTGGCTAAGATGACAGGTCCGAGAGGTCAGTGAATGTGTCATTGTAATTGCATAGATCAACACCTGCTTATCCAACGAGGCTTACCATCCGTGCTCTCCATTGTGGACTTATCTTCATCGCTTAAGGAGATAATGAGTGAAAGTTAAGTGGACTTCACAGGGCCTACAGGAGGCCAGGGAGGGTCAAGATCGCTGTGCCTCCGTGTTCTCTATGGTGGTAATTGTTTGTCTGTCTATCAGTGTCGGTGAGACCAAACCTGAAGTTATGTATTATGCTAAGCTATTCCCAGTATACTGCTGTTTACCTTAATGAgtcataaaaaaaatgtgtgtttaa

Function

NR:

description
exocyst complex component 5

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0048793 pronephros development biological_process
GO:0048278 vesicle docking biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K19984 EXOC5, SEC10; exocyst complex component 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954845.1 True 3984 mRNA 0.50 18 42144572 42158726

Neighbor

gene id symbol gene type direction distance location
LOC110497889 LOC107085600 coding downstream 82512 42052670 ~ 42062060 (-)
vcpkmt vcpkmt coding downstream 273611 41867674 ~ 41870961 (-)
LOC110497882 LOC106595288 coding downstream 312734 41695855 ~ 41831838 (-)
LOC110497880 LOC106595288 coding downstream 313046 41775849 ~ 41831526 (-)
LOC110498590 LOC106595288 coding downstream 379470 41745407 ~ 41765102 (-)
LOC110498354 LOC106593417 coding upstream 13415 42172141 ~ 42173747 (-)
LOC118941476 LOC106611023 coding upstream 26475 42185201 ~ 42189497 (-)
LOC110497894 LOC106593636 coding upstream 31545 42190271 ~ 42213019 (-)
LOC110497897 LOC106593433 coding upstream 160370 42319096 ~ 42339822 (-)
ngb1 ngb coding upstream 192671 42351397 ~ 42383265 (-)
G1625603 NA non-coding downstream 48239 42096103 ~ 42096333 (-)
G1625601 NA non-coding downstream 50715 42093617 ~ 42093857 (-)
G1625598 NA non-coding downstream 54014 42090110 ~ 42090558 (-)
G1625575 NA non-coding downstream 100654 42043656 ~ 42043918 (-)
G1625571 NA non-coding downstream 106667 42037617 ~ 42037905 (-)
G1626075 NA non-coding upstream 56755 42215481 ~ 42215925 (-)
G1626082 NA non-coding upstream 69632 42228358 ~ 42229565 (-)
G1626084 NA non-coding upstream 73404 42232130 ~ 42232401 (-)
G1626096 NA non-coding upstream 92242 42250968 ~ 42251503 (-)
G1626106 NA non-coding upstream 97439 42256165 ~ 42256668 (-)
G1625428 arf6 other downstream 294139 41846255 ~ 41850433 (-)
G1625066 NA other downstream 949813 41194433 ~ 41194759 (-)
LOC110497865 LOC106611002 other downstream 982160 41144107 ~ 41162883 (-)
LOC110497863 LOC106596965 other downstream 1064473 41052866 ~ 41080347 (-)
LOC110498350 NA other downstream 1448811 40689096 ~ 40699267 (-)
G1626105 NA other upstream 96509 42255235 ~ 42255797 (-)
LOC110498355 atg2b other upstream 307099 42465705 ~ 42480874 (-)
G1626232 LOC106611303 other upstream 481723 42640449 ~ 42641273 (-)
G1626324 NA other upstream 600568 42759294 ~ 42838434 (-)
G1627068 NA other upstream 1250001 43408727 ~ 43409109 (-)

Expression


Co-expression Network