LOC110497893


Basic Information

Item Value
gene id LOC110497893
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42158731 ~ 42162287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037738.1
ATGCACCAAATGATTCTTGATTGGTCCAGGCAGTCACATTATTATAAAAATAGGAAGTACAGTTTGCAGTGAAAATAGAACGAAACAGAACCTCAATGTTAATTTGGTAGAACATCAGCCGTGTCTGCCCCTTTGGGACCCCCCTGGACATCCCTCAGCCAGGGGCCTCATCGGCATCAGCAATGCCCTCTCCTGCAAGGATCCAGAAACACCAAGCCTAGAAAAAGGCTGCAGCATGGTGGGGCTGTGGTGAATGTAGCTCTTTCGGAGATGGTACGCTCCATGCAGTATGGAAACTGCACAGTGTCTACAGTGAATTGCAAGGGGTCCTTCCCAATGCGACGGTCACTCTCTCGCTGCGACCCAATGGCTCACCACTGCTGGATGTCCTGGTCCATCCTTGTGTGTCTTCACTGGATGCCTCTGGCCCCTACAAGTTCCCCTTCTCCCATTGGGTCTTTCAGGTCCCCGTGCCACCCATCCTCCCTATCAGCTGAAGGAGTATGACAACCAGCTGCATTTGACTGTGAGGAACAGCTTTGAGTACTGTGAGGCACATCTGCCGTTCTTTAACGGGTAACCTATggacatatcaaatcaaattgtttttgtcacctgcaccaaatacaacaggtgtagtagaccttaccgtgaaatgcttacttacaagcccttaaccaacaatgcagttcaataaatggagttaagaaaatatttactaaataaagtcAAATtcgattaattgttcagcagtcttatggcttgtggtaGAAGCTGTAATGAGCcttttgaacctagacttggctTTCCGGTAGCGCTTCCTCTAAACACAATACATAACATCTCACATTGATGACGGGCTTCCTAATGTCAACATAGTAGCTTATTACACATAATCATCACTTTTTGTCGCTTGAAATAGTGTTTCAGCTATTTTTTTAAGAAACACAACTTCAAGTTAAATTTAACCTCTGACCTATGTGTCCCTGTATGGACCAGATGAGTAGTGTGGATGTAAAGGTGAGCTCAGGACAGCTGGAGGTGTTCAAGGAGAACCTGCTGGTCTGGGTCCTCTGTATGTCTCATTGGTCTGGCGACAACATTTACACTTTGCAATGGCTCAGTTTAAGCCATATTACATGTTCAAATAGCTTTTGTGCCCTGGCACTCTTTAGGCCAGAAGTTCCCCAAGTCCAGTGAGGTGTCACTAGACAGCACTGAGTTTCTTAGGGCAGCTCCCAGGACCTACAGATCCTCTCTGCACAGACCTTACAGTCTACATCAAAcaaCTGGACAACAGGATTCTGGTGACCAGGTTTGAAACGGACAGCATCCAACATTATGAACCCAATGGTCAAAGTACTGTAACTGAATGGTTTGTTTCTGCTGTTGTTCTTACAGTCTCGGTCTCTTCTAAGATGCAAAATGCTGTTTCTCATCTGTTCTGAACACAGACCAATCCCTTTTTTGTGAAAGAATGCGCCTTATTAAATAGAGATAATGGTTATTTAACTGAATTCTAGTAAAGAGTAGTACTACTGGATAGGCATAttgaaatttaaaaaatggtaTTGATGCTGCCATTTTTGGAACATGTTTGGGCTACCCACTCCACATCTCTTTAGAGTGTTGCCACCCTTCGCTCTGACAGTCCCACTTCAGTCCCACCCCTCCATTAGCCGGATAATTAGCAGCTGGGGCCTTGTTGTCAGCTGGAGCTGAGGGCCTGTGGGAGACGGGGCTTGGGCTGTGAAAGGGTAAGCTGATCTGGGCAGAGTCTGTGCCACAAAGGGCCCCTCTGGAGAACTGGCAGGACTCACTGGTTCCTCCCTGTGACTGCCCTGCCTGTCAGCCAGTGGTCTCTTCAAATACCCAGCCTCTCCACTGAACCGCCCTCTAAAAAGTTGAGGCCCCAGCTGGCCAGATGACTGGCTAATTGGAGAAACTGGGTGTGGTGGCATTAAATATTACATGACAAAAATAGGTTTAGCGTAGTGGTCCGGATTCAGGTCTTAATTGCAATTTGATTAGAGTAGAGCTCATCCATGCATGGCCAtgataaaaaaaactgtaattgaAAAGAAAATTCATCGGCATGTCTACAAAATGTAACAAAAAAGAGAACGAAGCTGTTTACCAAGACATACTATATGTAGACCCGGTTTTTAGCAAGGAAggcacactgaacaaaaatataaacgcaaattaatttggccctaatctatggatttcacatgactgggcctgGGAGGGCCCACCTGGGAGGGtccactcactggggagccaggcccagcctatAAGAATACGTTTtatcccacaaaagggctttgttACAGAAAGAAATGCTCATCAGTTTCATCAGATGTCCGGGTAGCTAGTCTCAGATGATCACGCAGGtcaagaagccggatgtggaggtcctgggttgtcatggttacacgtggtctgtgcttgtgaggccagttggacgtactgccaaattctctaaaacgatgttggaggtggcg
>XR_002469735.2
CCAAATGATTCTTGATTGGTCCAGGCAGTCACATTATTATAAAAATAGGAAGTACAGTTTGCAGTGAAAATAGAACGAAACAGAACCTCAATGTTAATTTGGTAGAACATCAGCCGTGTCTGCCCCTTTGGGACCCCCCTGGACATCCCTCAGCCAGGGGCCTCATCGGCATCAGCAATGCCCTCTCCTGCAAGGATCCAGAAACACCAAGCCTAGAAAAAGGCTGCAGCATGGTGGGGCTGTGGTGAATGTAGCTCTTTCGGAGATGGTACGCTCCATGCAGTATGGAAACTGCACAGTGTCTACAGTGAATTGCAAGGGGTCCTTCCCAATGCGACGGTCACTCTCTCGCTGCGACCCAATGGCTCACCACTGCTGGATGTCCTGGTCCATCCTTGTGTGTCTTCACTGGATGCCTCTGGCCCCTACAAGTTCCCCTTCTCCCATTGGGTCTTTCAGGTCCCCGTGCCACCCATCCTCCCTATCAGCTGAAGGAGTATGACAACCAGCTGCATTTGACTGTGAGGAACAGCTTTGAGTACTGTGAGGCACATCTGCCGTTCTTTAACGGGTAACCTATggacatatcaaatcaaattgtttttgtcacctgcaccaaatacaacaggtgtagtagaccttaccgtgaaatgcttacttacaagcccttaaccaacaatgcagttcaataaatggagttaagaaaatatttactaaataaagtcAAATtcgattaattgttcagcagtcttatggcttgtggtaGAAGCTGTAATGAGCcttttgaacctagacttggctTTCCGGTAGCGCTTCCTCTAAACACAATACATAACATCTCACATTGATGACGGGCTTCCTAATGTCAACATAGTAGCTTATTACACATAATCATCACTTTTTGTCGCTTGAAATAGTGTTTCAGCTATTTTTTTAAGAAACACAACTTCAAGTTAAATTTAACCTCTGACCTATGTGTCCCTGTATGGACCAGATGAGTAGTGTGGATGTAAAGGTGAGCTCAGGACAGCTGGAGGTGTTCAAGGAGAACCTGCTGGTCTGGGTCCTCTGTATGTCTCATTGGTCTGGCGACAACATTTACACTTTGCAATGGCTCAGTTTAAGCCATATTACATGTTCAAATAGCTTTTGTGCCCTGGCACTCTTTAGGCCAGAAGTTCCCCAAGTCCAGTGAGGTGTCACTAGACAGCACTGAGTTTCTTAGGGCAGCTCCCAGGACCTACAGATCCTCTCTGCACAGACCTTACAGTCTACATCAAAGTAAGTCAGAATCTTTCTAGACAATGGAGATGCATCTAAAACCGAACAAACCAGAAACTTTTCATTTATGTTTTTCAGTTGAACTTTCGAGTGCCAGACTTGACTCTGTCTGGATGTTGTGTAGCCCAGCATTCAGTGCAGGTCTATTCCTCTGCAAAACCTTGCATAGTCACATATTTGGGTTCTAATGCTGGTTTCATTATTATGTATGAAAATAGGTGTATTTGTGTGAATTCTGAAtgcacaccctctctctcctctctgcagcaaCTGGACAACAGGATTCTGGTGACCAGGTTTGAAACGGACAGCATCCAACATTATGAACCCAATGGTCAAAGTACTGTAACTGAATGGTTTGTTTCTGCTGTTGTTCTTACAGTCTCGGTCTCTTCTAAGATGCAAAATGCTGTTTCTCATCTGTTCTGAACACAGACCAATCCCTTTTTTGTGAAAGAATGCGCCTTATTAAATAGAGATAATGGTTATTTAACTGAATTCTAGTAAAGAGTAGTACTACTGGATAGGCATAttgaaatttaaaaaatggtaTTGATGCTGCCATTTTTGGAACATGTTTGGGCTACCCACTCCACATCTCTTTAGAGTGTTGCCACCCTTCGCTCTGACAGTCCCACTTCAGTCCCACCCCTCCATTAGCCGGATAATTAGCAGCTGGGGCCTTGTTGTCAGCTGGAGCTGAGGGCCTGTGGGAGACGGGGCTTGGGCTGTGAAAGGGTAAGCTGATCTGGGCAGAGTCTGTGCCACAAAGGGCCCCTCTGGAGAACTGGCAGGACTCACTGGTTCCTCCCTGTGACTGCCCTGCCTGTCAGCCAGTGGTCTCTTCAAATACCCAGCCTCTCCACTGAACCGCCCTCTAAAAAGTTGAGGCCCCAGCTGGCCAGATGACTGGCTAATTGGAGAAACTGGGTGTGGTGGCATTAAATATTACATGACAAAAATAGGTTTAGCGTAGTGGTCCGGATTCAGGTCTTAATTGCAATTTGATTAGAGTAGAGCTCATCCATGCATGGCCAtgataaaaaaaactgtaattgaAAAGAAAATTCATCGGCATGTCTACAAAATGTAACAAAAAAGAGAACGAAGCTGTTTACCAAGACATACTATATGTAGACCCGGTTTTTAGCAAGGAAggcacactgaacaaaaatataaacgcaaattaatttggccctaatctatggatttcacatgactgggcctgGGAGGGCCCACCTGGGAGGGtccactcactggggagccaggcccagcctatAAGAATACGTTTtatcccacaaaagggctttgttACAGAAAGAAATGCTCATCAGTTTCATCAGATGTCCGGGTAGCTAGTCTCAGATGATCACGCAGGtcaagaagccggatgtggaggtcctgggttgtcatggttacacgtggtctgtgcttgtgaggccagttggacgtactgccaaattctctaaaacgatgttggaggtggcg
>XR_002469737.2
GGAAGTACAGTTTGCAGTGAAAATAGAACGAAACAGAACCTCAATGTTAATTTGGTAGAACATCAGCCGTTGGAGCAGCGTGCTAAGTGTCTGGCCGgctccctctgtcctctggccAGTGTTGGCCATTTGCCCCTGGTGGATGGCCCCTTCCTCCTCTGGCCAGGCTGTTCTCTGTCCCACAGGACCTCACACTGTTGTCGGACCTGCGGGCTTTCCTCTGTGGGTCTGGGAGTAAGCCTGACAGTGAAGGGCTGGCCTATCGCCTGGCCATGATACCCTCTATCTTCCTGCAGGTCTGCCCCTTTGGGACCCCCCTGGACATCCCTCAGCCAGGGGCCTCATCGGCATCAGCAATGCCCTCTCCTGCAAGGATCCAGAAACACCAAGCCTAGAAAAAGGCTGCAGCATGGTGGGGCTGTGGTGAATGTAGCTCTTTCGGAGATGGTACGCTCCATGCAGTATGGAAACTGCACAGTGTCTACAGTGAATTGCAAGGGGTCCTTCCCAATGCGACGGTCACTCTCTCGCTGCGACCCAATGGCTCACCACTGCTGGATGTCCTGGTCCATCCTTGTGTGTCTTCACTGGATGCCTCTGGCCCCTACAAGTTCCCCTTCTCCCATTGGGTCTTTCAGGTCCCCGTGCCACCCATCCTCCCTATCAGCTGAAGGAGTATGACAACCAGCTGCATTTGACTGTGAGGAACAGCTTTGAGTACTGTGAGGCACATCTGCCGTTCTTTAACGGGTAACCTATggacatatcaaatcaaattgtttttgtcacctgcaccaaatacaacaggtgtagtagaccttaccgtgaaatgcttacttacaagcccttaaccaacaatgcagttcaataaatggagttaagaaaatatttactaaataaagtcAAATtcgattaattgttcagcagtcttatggcttgtggtaGAAGCTGTAATGAGCcttttgaacctagacttggctTTCCGGTAGCGCTTCCTCTAAACACAATACATAACATCTCACATTGATGACGGGCTTCCTAATGTCAACATAGTAGCTTATTACACATAATCATCACTTTTTGTCGCTTGAAATAGTGTTTCAGCTATTTTTTTAAGAAACACAACTTCAAGTTAAATTTAACCTCTGACCTATGTGTCCCTGTATGGACCAGATGAGTAGTGTGGATGTAAAGGTGAGCTCAGGACAGCTGGAGGTGTTCAAGGAGAACCTGCTGGTCTGGGTCCTCTGTATGTCTCATTGGTCTGGCGACAACATTTACACTTTGCAATGGCTCAGTTTAAGCCATATTACATGTTCAAATAGCTTTTGTGCCCTGGCACTCTTTAGGCCAGAAGTTCCCCAAGTCCAGTGAGGTGTCACTAGACAGCACTGAGTTTCTTAGGGCAGCTCCCAGGACCTACAGATCCTCTCTGCACAGACCTTACAGTCTACATCAAAGTAAGTCAGAATCTTTCTAGACAATGGAGATGCATCTAAAACCGAACAAACCAGAAACTTTTCATTTATGTTTTTCAGTTGAACTTTCGAGTGCCAGACTTGACTCTGTCTGGATGTTGTGTAGCCCAGCATTCAGTGCAGGTCTATTCCTCTGCAAAACCTTGCATAGTCACATATTTGGGTTCTAATGCTGGTTTCATTATTATGTATGAAAATAGGTGTATTTGTGTGAATTCTGAAtgcacaccctctctctcctctctgcagcaaCTGGACAACAGGATTCTGGTGACCAGGTTTGAAACGGACAGCATCCAACATTATGAACCCAATGGTCAAAGTACTGTAACTGAATGGTTTGTTTCTGCTGTTGTTCTTACAGTCTCGGTCTCTTCTAAGATGCAAAATGCTGTTTCTCATCTGTTCTGAACACAGACCAATCCCTTTTTTGTGAAAGAATGCGCCTTATTAAATAGAGATAATGGTTATTTAACTGAATTCTAGTAAAGAGTAGTACTACTGGATAGGCATAttgaaatttaaaaaatggtaTTGATGCTGCCATTTTTGGAACATGTTTGGGCTACCCACTCCACATCTCTTTAGAGTGTTGCCACCCTTCGCTCTGACAGTCCCACTTCAGTCCCACCCCTCCATTAGCCGGATAATTAGCAGCTGGGGCCTTGTTGTCAGCTGGAGCTGAGGGCCTGTGGGAGACGGGGCTTGGGCTGTGAAAGGGTAAGCTGATCTGGGCAGAGTCTGTGCCACAAAGGGCCCCTCTGGAGAACTGGCAGGACTCACTGGTTCCTCCCTGTGACTGCCCTGCCTGTCAGCCAGTGGTCTCTTCAAATACCCAGCCTCTCCACTGAACCGCCCTCTAAAAAGTTGAGGCCCCAGCTGGCCAGATGACTGGCTAATTGGAGAAACTGGGTGTGGTGGCATTAAATATTACATGACAAAAATAGGTTTAGCGTAGTGGTCCGGATTCAGGTCTTAATTGCAATTTGATTAGAGTAGAGCTCATCCATGCATGGCCAtgataaaaaaaactgtaattgaAAAGAAAATTCATCGGCATGTCTACAAAATGTAACAAAAAAGAGAACGAAGCTGTTTACCAAGACATACTATATGTAGACCCGGTTTTTAGCAAGGAAggcacactgaacaaaaatataaacgcaaattaatttggccctaatctatggatttcacatgactgggcctgGGAGGGCCCACCTGGGAGGGtccactcactggggagccaggcccagcctatAAGAATACGTTTtatcccacaaaagggctttgttACAGAAAGAAATGCTCATCAGTTTCATCAGATGTCCGGGTAGCTAGTCTCAGATGATCACGCAGGtcaagaagccggatgtggaggtcctgggttgtcatggttacacgtggtctgtgcttgtgaggccagttggacgtactgccaaattctctaaaacgatgttggaggtggcg

Function

NR:

description
AP-5 complex subunit mu-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037738.1 False 2507 mRNA 0.46 5 42158731 42162287
XR_002469735.2 False 2769 mRNA 0.45 4 42158736 42162287
XR_002469737.2 True 2948 mRNA 0.47 4 42158783 42162287

Neighbor

gene id symbol gene type direction distance location
tmem260 LOC106593970 coding upstream 129280 41988770 ~ 42029506 (+)
LOC110497886 LOC106594164 coding upstream 174640 41941804 ~ 41984091 (+)
LOC100305273 ktn1 coding upstream 221973 41892564 ~ 41936758 (+)
LOC110497884 arf6 coding upstream 308273 41846192 ~ 41850458 (+)
LOC110497883 NA coding upstream 436100 41719384 ~ 41722631 (+)
LOC110497895 NA coding downstream 65969 42228256 ~ 42230812 (+)
LOC110497896 LOC106593515 coding downstream 114691 42276978 ~ 42300523 (+)
LOC110497898 tmem63c coding downstream 178680 42340967 ~ 42375186 (+)
LOC110497900 NA coding downstream 226589 42388876 ~ 42398844 (+)
LOC110497904 bbof1 coding downstream 259466 42421753 ~ 42431912 (+)
G1625640 LOC106593771 non-coding upstream 9013 42148917 ~ 42149718 (+)
G1625629 NA non-coding upstream 32987 42125435 ~ 42125744 (+)
G1624595 NA non-coding upstream 68121 42090406 ~ 42090610 (+)
G1624590 NA non-coding upstream 79700 42078797 ~ 42079031 (+)
G1624576 NA non-coding upstream 96674 42057977 ~ 42062057 (+)
G1625677 NA non-coding downstream 44698 42206985 ~ 42207907 (+)
G1625699 NA non-coding downstream 76540 42238827 ~ 42239109 (+)
G1625702 NA non-coding downstream 82831 42245118 ~ 42245379 (+)
G1625713 NA non-coding downstream 93094 42255381 ~ 42255642 (+)
G1624524 NA other upstream 121613 42036328 ~ 42037118 (+)
G1624565 LOC100846954 other upstream 122787 42035353 ~ 42035944 (+)
G1624560 NA other upstream 148401 42009961 ~ 42010330 (+)
G1624239 NA other upstream 712370 41444521 ~ 41446361 (+)
G1625710 NA other downstream 88444 42250731 ~ 42251571 (+)
LOC110497931 LOC106589425 other downstream 1149553 43279273 ~ 43440028 (+)
G1627319 NA other downstream 1652439 43814593 ~ 43816501 (+)
G1628073 LOC106610840 other downstream 2252035 44414322 ~ 44448672 (+)
G1628486 NA other downstream 2521075 44683362 ~ 44748925 (+)

Expression


Co-expression Network