LOC110498354 (LOC106593417)



Basic Information


Item Value
gene id LOC110498354
gene name LOC106593417
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42172141 ~ 42173747 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>LOC110498354
ATGGCAGGACAAAGACCTAAGAAGATGGATAAAGCAATTATTAAGATGATAGCCCGTGACAAGCAGTCATTCACAGTGGTGTCTAACGTTGGTTTTCAGAGGCTGATTACTCTTGCTGAACCCCGGTACAGGATCAAAGATGAAAAATTATACCGCATAGAAATGCTAGGTAAAACACATGAAAGAGCTGTGATGAAAGTGAAGAATCTTTTGGCTCCATTGAATGCTCCACACATGGCATTCACAACTGACTGCTGGTCAGGCACTACAGAGTCCCTGATGAGCCTTACTGGACATTTAATTGACAATGTCTGGACAAGAAAGCAGGTTGTGCTGAATGTCAAGACTATGACTGGATCACACACAGGAAACTATATCAGAGAGATGTTTTTAACTATGTTGGAATACTGGGAGATCCACACAGAACATGTAGTGCTGGTCATCAGGGACAGTGGGGCAAACATGGTGAAAGGTATGAGACTGGCAGAGCTTCCAGACTTCAGCTACAGTGCACACACCCTACAGCTTGTAATCAATGATGGACTATCCAGTCAGAGAGCTGTGCTAGACATTATTGCCATGTTGAAGAGCTGTGCAACTCACTTTGACCACTCTGTATTGGCCAAACAGAGGCTGAGGGCCATTCAGGAAGAGCTTGGCCTTCCCAAACACAGCATCATCCAAGCAGTTCAAACTCGCTGGAACTCAACACTACACATGTTGCAGAGGATGCTTGAATAGAGGCGTGCACTGAATGTGTATGCAGGTGAATATGGACACATCAGCAGTTTGTCTGCTGCACAGTGGGACATTGTCTCTAACCTAATTGAGACTCTGGCACCTATGGAGGAGGTTACACTGGAGATGAGCCACTCCAACTCTACAGCAGCATGCATCATCCCCAGTGTGTCGGTGCTGAAGCTGATGCTGCAGCAGGAGGGTTCTTCTACTCAAGGCATCAAAACTTTACGGAAGACCATGTTGGACAGTCTGACAAGGTGGTTCCCCAAGGCCGAGGAGACAAAGTGCCTAGTGCTGGCAACTGTCCTGGATCCACGTTACAAGAGATATGCCTTCACCTCAGGGACAGCACTAGAGAAAGCAAAAGAGTGGCTGAAGGAGGAATCTGacctaaaaaaaacaaataccaGAGCCACAGTGCAAAGAGTCCGGATAGATCAGCCACCCAGTCTGGTGGAAAGCCTCTACGCTAGAATCCTTGGTAGCCAAGAGGGCAGGGCTGAAGTCCAGTGTAGTTTTGAAATTGAGCTGGAGCGTTACCTCACAGAGCCTGTCATTGACAGAAAGAGCAGCTTGCCTTTGGAGCGGTGGAAGCAGAATGGGGACAGTCTTCAATCACTTGCTCCACTGGCAAAGAAGTTTCTCTGTCCCCCATCTTCTTCGGTCCCTAGCAAGAGAGTGTTCATTGAGGTGGGAATCATTTATGATAAGCAGAGGAGCAGACTGACGGGAACATACAGACAAGCTCTGCTTTCTgcactacaacctaaaacctcttaactGGGAATATAATAGGAACTACaatctttcatatgttctcatgttctga

Function


NR:

description
PREDICTED: zinc finger BED domain-containing protein 4-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
LOC110498354 True 1570 mRNA 0.47 2 42172141 42173747

Neighbor


gene id symbol gene type direction distance location
LOC110497892 LOC106593771 coding downstream 13415 42144572 ~ 42158726 (-)
LOC110497889 LOC107085600 coding downstream 110081 42052670 ~ 42062060 (-)
vcpkmt vcpkmt coding downstream 301180 41867674 ~ 41870961 (-)
LOC110497882 LOC106595288 coding downstream 340303 41695855 ~ 41831838 (-)
LOC118941476 LOC106611023 coding upstream 11454 42185201 ~ 42189497 (-)
LOC110497894 LOC106593636 coding upstream 16524 42190271 ~ 42213019 (-)
LOC110497897 LOC106593433 coding upstream 145349 42319096 ~ 42339822 (-)
ngb1 ngb coding upstream 177650 42351397 ~ 42383265 (-)
LOC118941477 NA coding upstream 193783 42367530 ~ 42375160 (-)
G1625603 NA non-coding downstream 75808 42096103 ~ 42096333 (-)
G1625601 NA non-coding downstream 78284 42093617 ~ 42093857 (-)
G1625598 NA non-coding downstream 81583 42090110 ~ 42090558 (-)
G1625575 NA non-coding downstream 128223 42043656 ~ 42043918 (-)
G1625571 NA non-coding downstream 134236 42037617 ~ 42037905 (-)
G1626075 NA non-coding upstream 41734 42215481 ~ 42215925 (-)
G1626082 NA non-coding upstream 54611 42228358 ~ 42229565 (-)
G1626084 NA non-coding upstream 58383 42232130 ~ 42232401 (-)
G1626096 NA non-coding upstream 77221 42250968 ~ 42251503 (-)
G1626106 NA non-coding upstream 82418 42256165 ~ 42256668 (-)
G1625428 arf6 other downstream 321708 41846255 ~ 41850433 (-)
G1625066 NA other downstream 977382 41194433 ~ 41194759 (-)
LOC110497865 LOC106611002 other downstream 1009729 41144107 ~ 41162883 (-)
LOC110497863 LOC106596965 other downstream 1092042 41052866 ~ 41080347 (-)
LOC110498350 NA other downstream 1476380 40689096 ~ 40699267 (-)
G1626105 NA other upstream 81488 42255235 ~ 42255797 (-)
LOC110498355 atg2b other upstream 292078 42465705 ~ 42480874 (-)
G1626232 LOC106611303 other upstream 466702 42640449 ~ 42641273 (-)
G1626324 NA other upstream 585547 42759294 ~ 42838434 (-)
G1627068 NA other upstream 1234980 43408727 ~ 43409109 (-)

Expression



Co-expression Network