LOC110497894 (LOC106593636)


Basic Information

Item Value
gene id LOC110497894
gene name LOC106593636
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42190271 ~ 42213019 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574346.2
AAACGAAGAGGAGGGGAATgcaagggaggaggagggagaacgaAAGGAAAGCGATGAAGGGAGTGATTGCGCGGTGCCACACACTTGAATCTCAGTCTCCCTTGGAGACAGTGCATGACAGTGCAACAGTAGTCTCCACTCCACAGCACTTCTACTGAGCTCCAGCACtgtccagagagaaagagagacagcatCTGAGTAAGAGACAGTGAGGGGGTTAGCTCAACTGATTGAGAACGAgggagaaataaataaataaggagATATAAACATCAATAGACATTTAGATAGAAGAGACTGATAGAGAGCCGTCTGTGGAGGAGCCAGGAGCCTGGGAATGCAGAGGGATTGCAGGAGGAGCTGCTGAGTGTAGCAGCAgtccaggcaggcagacagacacacacacatcccagggAGGGACTGTTGGCTCTGCCTCTAGTGGAGGATGAAGAAGCACTCGGCCAGAGTGGCTCCTCTCAGCTCCTACAGCTCCCAGGTCCTCACCTGCCCCATCTCCGAAGGAGAGGAGGGTTCTGAGTCTCGTGCAGACACCCCAGGCAGCGAGGCCAGTGGAGAGGGGACATCGTACCAGACGTGTGCTAACACAGTGCTGAAGGTGCTGGGGGGCCTCCTATTGGTCCTATGTGTGTCCTCCTCCTGGGTGGGCACCACTCAGCTGGTCCAGCTCACCTTCAAGTCCTTCTCCTGCCCCTTCTTCGTCTCCTGGTTCAGCACCAACTGgaacatcctcctcttccctctctactACGGAGGCCATGTGGTCACCACCCGGGACAAGCAAACGCCTATACAGAAATTCAGAGAATGCAGCAGGCTTTTCGGGGAAGATGGGATGACACTCAAGCTGTTCCTGAAGAGGACAGCCCCCTTCTCCATCCTGTGGACCCTGACTAACTACCTGTACCTGCTGGCCCTGAGGAAGCTGACTGCCACTGACGTCTCAGCCCTCTACTGCTGCCACAAGGCCTTCGTCTTCCTGCTGTCATGGATCGTCCTGAAGGACCGCTTCATGGGTGTACGGATTGTGGCAGCCATAATGGCCATCACAGGCATTGTCATGATGGCATACGCAGATGGTTTCCATGGGGACTCCATCATAGGTGTGGCCTTGGCTGTGGGCTCTGCCTCCACATCGGCTCTCTACAAGGTGCTGTTTAAGATGTTCCTGGGCAGTGCCAGCCTGGGTGAGGTGGCTCACTTCCTCTCCACCATGGGTGTCTTCAATCTCATCTTCATCTCCTTCATCCCCCTCATCCTCTACTTCACCAAAGTGGAGCACTGGGGCTCTCTGTCCTCACTGCCCTGGGGATACCTGTGTGGCCTGGCTGGGCTCTGGCTTGTGTTCAATATCCTGGTTAATGTTGGTGTGGTGCTTACCTACCCCATCCTCATCTCTATAGGGACACTGCTCAGTGTGCCCGGCAATgcagCGGTAGATGTGTTGAAACATGAGGTTATCTTCAGTGTGGTGCGTCTGGCTGCCACCTGCATCATCTGCCTGGgcttcctgctgctgctgcttcctgAGGAGTGGGACTCCGTCACTCTGCGCTTCCTCGCCGCCTTCGCAGACAAGAAGTCTGAGGAGCATGGCGAGGAGCTGACCGAGTCCAGCATCCACACGCGCAGCCGCAGCCGAGCCAATGGCACAGTCTCAATCCCTATGGCATGATCCCATGATCCTCCACTGCCCCGTCCCATCACCAACCCCCATTCTCACACGTTTCTACATGTCCCATCTGGGAAGCGTGGCGAGATGACTCTGGTGCTGACTTACAGACCAGGAAGTCCAAAATCAGGAGAACAGGATGTGTAACTCTCACTGAGAGAAACTATCACAGTTCTGTCACTTTCCCCAGGAACTACTGGGGAGTGAAAATAGAACATTTACTGCTGAGTTTGGTGAGCAGAAAGTTGGAAAGTGTTATTTACTTTCTTGAATTCCTTGCCACGCCCAGTTTTGCCCGTCACATGCCCCTAGACCAGTGTTTCTCAACTTTGGTCCTCCAATACCCccacagtacatatttttgttGTGACCCCGGACAAGCACATCTAATCATCTAGCACTTGCCAAATTGTATCAGTTGTTTTTATCCGAGGCTACAACAAAAATATGTGCTGTTGGGGGCACTgaaggaccggagttgggaaacactagCCTAGACCACGTAAGCTCAACCTTGAACCTGCTACACGGACTGTATTCTGTGAATATAAATATGGAATGGGCCAGTTTGGCTCAATCTTATATGTATTTATTGAATTTACTCAGAGGTGTATCAGTATAGTATTTACATTTTACTTCTTATATAGAATTATGTACAGGAATGGGTTGGGAAATACAGTTCCTTTAGAAAGTGTTTTTTTCCCACATTTCGTGTTGCACCCTGATTATAATTACATTTAGATGTTTTTGTCAcgagcctacacacaatactccataatgtcaaagtggaattatgttttttttgttttttaaatttacaaatgaattgaaaatgaaaagctgaaatgtcttgagtcaataagtattcaacccctttgttatggcaaacctaaataagttcaggagtaaaagtgTGCTTAAACAAGTCACAAAATAAGTTGCATGGTCTCACtctttgtgcaataatagtgtttaacattatttttttaaagactaCCTAAtatctgtacctcacacatacaattatctgtaagttcCCTCTGTCGAgcactgaatttcaaacacagattcaaccacaaagaccagggaggctttCCAATTGCTCGAAAAGAAGGTAGATGGGTGAATATCCCTGTGATAATGAAGTTATTCATtagactttggatggtgtatcaatacacccagccactataaagatacagatgtccttcctaactcagttgtcagagaggaaggaaacagcttagggatttcatcatgaggccaatagtgactt
>XM_021574345.2
CACGCTCCCCAAATTCAATAACCTCCGCGCCTTGCGAACAGTGTGGTGCAATGTGAATGCCCTTCCATAGCTGTTAGTTGATGCCTTTGATACTATATTTCGCATGGTGAGCGCGGAACACACGAAACATTCCCTTCTGACTGCGCGTTTGGATTTATGATGATCAGTACCGAGGGTGCTGAAGGTGGAGGAGACCAGCCCTGCTTTCGGCTGGAACCTTTGAACGCGCACCTATCAGGCAAAGCGGGTGAAACCCACCTTCTCTATGGGGACACGGACGCCACCTCTAAAGTGACCGCCAACGGTGTGCAAGACATTGAGGATAGAATTTTGCGGATCACTGGTTATTACGGCTATTATCCGGGCTACTCCAGTCACAGAAGAGAGGAGGGTTCTGAGTCTCGTGCAGACACCCCAGGCAGCGAGGCCAGTGGAGAGGGGACATCGTACCAGACGTGTGCTAACACAGTGCTGAAGGTGCTGGGGGGCCTCCTATTGGTCCTATGTGTGTCCTCCTCCTGGGTGGGCACCACTCAGCTGGTCCAGCTCACCTTCAAGTCCTTCTCCTGCCCCTTCTTCGTCTCCTGGTTCAGCACCAACTGgaacatcctcctcttccctctctactACGGAGGCCATGTGGTCACCACCCGGGACAAGCAAACGCCTATACAGAAATTCAGAGAATGCAGCAGGCTTTTCGGGGAAGATGGGATGACACTCAAGCTGTTCCTGAAGAGGACAGCCCCCTTCTCCATCCTGTGGACCCTGACTAACTACCTGTACCTGCTGGCCCTGAGGAAGCTGACTGCCACTGACGTCTCAGCCCTCTACTGCTGCCACAAGGCCTTCGTCTTCCTGCTGTCATGGATCGTCCTGAAGGACCGCTTCATGGGTGTACGGATTGTGGCAGCCATAATGGCCATCACAGGCATTGTCATGATGGCATACGCAGATGGTTTCCATGGGGACTCCATCATAGGTGTGGCCTTGGCTGTGGGCTCTGCCTCCACATCGGCTCTCTACAAGGTGCTGTTTAAGATGTTCCTGGGCAGTGCCAGCCTGGGTGAGGTGGCTCACTTCCTCTCCACCATGGGTGTCTTCAATCTCATCTTCATCTCCTTCATCCCCCTCATCCTCTACTTCACCAAAGTGGAGCACTGGGGCTCTCTGTCCTCACTGCCCTGGGGATACCTGTGTGGCCTGGCTGGGCTCTGGCTTGTGTTCAATATCCTGGTTAATGTTGGTGTGGTGCTTACCTACCCCATCCTCATCTCTATAGGGACACTGCTCAGTGTGCCCGGCAATgcagCGGTAGATGTGTTGAAACATGAGGTTATCTTCAGTGTGGTGCGTCTGGCTGCCACCTGCATCATCTGCCTGGgcttcctgctgctgctgcttcctgAGGAGTGGGACTCCGTCACTCTGCGCTTCCTCGCCGCCTTCGCAGACAAGAAGTCTGAGGAGCATGGCGAGGAGCTGACCGAGTCCAGCATCCACACGCGCAGCCGCAGCCGAGCCAATGGCACAGTCTCAATCCCTATGGCATGATCCCATGATCCTCCACTGCCCCGTCCCATCACCAACCCCCATTCTCACACGTTTCTACATGTCCCATCTGGGAAGCGTGGCGAGATGACTCTGGTGCTGACTTACAGACCAGGAAGTCCAAAATCAGGAGAACAGGATGTGTAACTCTCACTGAGAGAAACTATCACAGTTCTGTCACTTTCCCCAGGAACTACTGGGGAGTGAAAATAGAACATTTACTGCTGAGTTTGGTGAGCAGAAAGTTGGAAAGTGTTATTTACTTTCTTGAATTCCTTGCCACGCCCAGTTTTGCCCGTCACATGCCCCTAGACCAGTGTTTCTCAACTTTGGTCCTCCAATACCCccacagtacatatttttgttGTGACCCCGGACAAGCACATCTAATCATCTAGCACTTGCCAAATTGTATCAGTTGTTTTTATCCGAGGCTACAACAAAAATATGTGCTGTTGGGGGCACTgaaggaccggagttgggaaacactagCCTAGACCACGTAAGCTCAACCTTGAACCTGCTACACGGACTGTATTCTGTGAATATAAATATGGAATGGGCCAGTTTGGCTCAATCTTATATGTATTTATTGAATTTACTCAGAGGTGTATCAGTATAGTATTTACATTTTACTTCTTATATAGAATTATGTACAGGAATGGGTTGGGAAATACAGTTCCTTTAGAAAGTGTTTTTTTCCCACATTTCGTGTTGCACCCTGATTATAATTACATTTAGATGTTTTTGTCAcgagcctacacacaatactccataatgtcaaagtggaattatgttttttttgttttttaaatttacaaatgaattgaaaatgaaaagctgaaatgtcttgagtcaataagtattcaacccctttgttatggcaaacctaaataagttcaggagtaaaagtgTGCTTAAACAAGTCACAAAATAAGTTGCATGGTCTCACtctttgtgcaataatagtgtttaacattatttttttaaagactaCCTAAtatctgtacctcacacatacaattatctgtaagttcCCTCTGTCGAgcactgaatttcaaacacagattcaaccacaaagaccagggaggctttCCAATTGCTCGAAAAGAAGGTAGATGGGTGAATATCCCTGTGATAATGAAGTTATTCATtagactttggatggtgtatcaatacacccagccactataaagatacagatgtccttcctaactcagttgtcagagaggaaggaaacagcttagggatttcatcatgaggccaatagtgactt

Function

NR:

description
solute carrier family 35 member F4-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15288 SLC35F3_4; solute carrier family 35, member F3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574346.2 False 2966 mRNA 0.49 7 42190271 42199634
XM_021574345.2 True 2827 mRNA 0.48 7 42190271 42213019

Neighbor

gene id symbol gene type direction distance location
LOC118941476 LOC106611023 coding downstream 774 42185201 ~ 42189497 (-)
LOC110498354 LOC106593417 coding downstream 16524 42172141 ~ 42173747 (-)
LOC110497892 LOC106593771 coding downstream 31545 42144572 ~ 42158726 (-)
LOC110497889 LOC107085600 coding downstream 128211 42052670 ~ 42062060 (-)
vcpkmt vcpkmt coding downstream 319310 41867674 ~ 41870961 (-)
LOC110497897 LOC106593433 coding upstream 106077 42319096 ~ 42339822 (-)
ngb1 ngb coding upstream 138378 42351397 ~ 42383265 (-)
LOC118941477 NA coding upstream 154511 42367530 ~ 42375160 (-)
LOC110497901 entpd5 coding upstream 186897 42399916 ~ 42414821 (-)
LOC110497902 aldh6a1 coding upstream 218965 42431984 ~ 42444258 (-)
G1625603 NA non-coding downstream 93938 42096103 ~ 42096333 (-)
G1625601 NA non-coding downstream 96414 42093617 ~ 42093857 (-)
G1625598 NA non-coding downstream 99713 42090110 ~ 42090558 (-)
G1625575 NA non-coding downstream 146353 42043656 ~ 42043918 (-)
G1625571 NA non-coding downstream 152366 42037617 ~ 42037905 (-)
G1626075 NA non-coding upstream 2462 42215481 ~ 42215925 (-)
G1626082 NA non-coding upstream 15339 42228358 ~ 42229565 (-)
G1626084 NA non-coding upstream 19111 42232130 ~ 42232401 (-)
G1626096 NA non-coding upstream 37949 42250968 ~ 42251503 (-)
G1626106 NA non-coding upstream 43146 42256165 ~ 42256668 (-)
G1625428 arf6 other downstream 339838 41846255 ~ 41850433 (-)
G1625066 NA other downstream 995512 41194433 ~ 41194759 (-)
LOC110497865 LOC106611002 other downstream 1027859 41144107 ~ 41162883 (-)
LOC110497863 LOC106596965 other downstream 1110172 41052866 ~ 41080347 (-)
LOC110498350 NA other downstream 1494510 40689096 ~ 40699267 (-)
G1626105 NA other upstream 42216 42255235 ~ 42255797 (-)
LOC110498355 atg2b other upstream 252806 42465705 ~ 42480874 (-)
G1626232 LOC106611303 other upstream 427430 42640449 ~ 42641273 (-)
G1626324 NA other upstream 546275 42759294 ~ 42838434 (-)
G1627068 NA other upstream 1195708 43408727 ~ 43409109 (-)

Expression


Co-expression Network