Gene
RNA
| Item | Value |
|---|---|
| gene id | ngb1 |
| gene name | ngb |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 42351397 ~ 42383265 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ngb | Enables nitrite reductase activity and oxygen binding activity. Acts upstream of or within response to hypoxia. Predicted to be located in cytoplasm and perikaryon. Is expressed in blood; brain; and eye. Orthologous to human NGB (neuroglobin). |
| description |
|---|
| neuroglobin-1 |
| id | name | namespace |
|---|---|---|
| GO:0015671 | oxygen transport | biological_process |
| GO:0043204 | perikaryon | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005506 | iron ion binding | molecular_function |
| GO:0019825 | oxygen binding | molecular_function |
| GO:0005344 | oxygen carrier activity | molecular_function |
| GO:0020037 | heme binding | molecular_function |
| id | description |
|---|---|
| K21893 | NGB; neuroglobin |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001124388.1 | True | 1319 | mRNA | 0.48 | 7 | 42351397 | 42383265 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110497897 | LOC106593433 | coding | downstream | 11575 | 42319096 ~ 42339822 (-) |
| LOC110497894 | LOC106593636 | coding | downstream | 138378 | 42190271 ~ 42213019 (-) |
| LOC118941476 | LOC106611023 | coding | downstream | 161900 | 42185201 ~ 42189497 (-) |
| LOC110498354 | LOC106593417 | coding | downstream | 177650 | 42172141 ~ 42173747 (-) |
| LOC110497892 | LOC106593771 | coding | downstream | 192671 | 42144572 ~ 42158726 (-) |
| LOC110497901 | entpd5 | coding | upstream | 16651 | 42399916 ~ 42414821 (-) |
| LOC110497902 | aldh6a1 | coding | upstream | 48719 | 42431984 ~ 42444258 (-) |
| LOC110497906 | NA | coding | upstream | 65112 | 42448377 ~ 42451017 (-) |
| LOC110497908 | tmed8 | coding | upstream | 72190 | 42455455 ~ 42459369 (-) |
| noxred1 | noxred1 | coding | upstream | 76186 | 42459451 ~ 42465605 (-) |
| G1626113 | NA | non-coding | downstream | 84269 | 42266920 ~ 42267128 (-) |
| G1626112 | NA | non-coding | downstream | 84537 | 42266369 ~ 42266860 (-) |
| G1626111 | NA | non-coding | downstream | 86615 | 42264571 ~ 42264782 (-) |
| G1626107 | NA | non-coding | downstream | 93920 | 42257226 ~ 42257477 (-) |
| G1626190 | NA | non-coding | upstream | 62348 | 42445613 ~ 42448304 (-) |
| LOC110498355 | atg2b | non-coding | upstream | 92853 | 42465705 ~ 42480874 (-) |
| G1626212 | NA | non-coding | upstream | 103457 | 42486722 ~ 42486974 (-) |
| G1626254 | NA | non-coding | upstream | 181090 | 42564355 ~ 42565402 (-) |
| G1626231 | NA | non-coding | upstream | 203670 | 42586935 ~ 42588868 (-) |
| G1626105 | NA | other | downstream | 95600 | 42255235 ~ 42255797 (-) |
| G1625428 | arf6 | other | downstream | 500964 | 41846255 ~ 41850433 (-) |
| G1625066 | NA | other | downstream | 1156638 | 41194433 ~ 41194759 (-) |
| LOC110497865 | LOC106611002 | other | downstream | 1188985 | 41144107 ~ 41162883 (-) |
| LOC110497863 | LOC106596965 | other | downstream | 1271298 | 41052866 ~ 41080347 (-) |
| G1626232 | LOC106611303 | other | upstream | 257184 | 42640449 ~ 42641273 (-) |
| G1626324 | NA | other | upstream | 376029 | 42759294 ~ 42838434 (-) |
| G1627068 | NA | other | upstream | 1025462 | 43408727 ~ 43409109 (-) |
| LOC110498001 | NA | other | upstream | 3620500 | 46003765 ~ 46008718 (-) |
