LOC118941477


Basic Information

Item Value
gene id LOC118941477
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42367530 ~ 42375160 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037741.1
aacagctctgcgctgctccacgaagcgcaagaagtatgaatgccctgacttctgaaGAGGCCGTACCGCTgtaaatgctgcacggccaatGTAGACATCGGATTGACCAAGTAGTGCCTATATATGAACTTCATGGCCTGTGAAACGACATGCTGAAATCCAGAGCACTTATTTGGAAATTGACATCAAACAGCCACCTGAAGAACAGGTCGAGACTAGAGATGGAAGAACCACAGGCTGTCAACAGGCCGGGTGACGTTGAGTTTGTCCATGGTGTTGACGATGATGGCGGGCGtggtgaggaagaagaggagtaggaagaggaggatattgAGCAGGACAAAGCGCAGCCACCAGCGGGAGCCACACAGCGACAGGTTCtccctggagacagagaagtAAACAAGAAGTCAGATGCTCATCTATCCAAAAGCCTTCACGTCATATTGCCACTAATCTGTACTACTGTGTAAACCCACAAAGTATGAATACAACAAAAGCAACCCCTAAAGTGAGAGGGAGTATGCTCCAGCGCACTGACTACTCTGGAGTGGATAACAGGTTGGACACATCACACTCCTTTTTAAAGAAGGGAAACAGTCGGTTACCCAGAGCGACATGCAGAGGCaatgtgtcacagccggccgtgaccgggagccCCACAGTTGTCTAGACTACCTGCACCAGGAAGCAGTACTACTccctccacacaaacacacactgccaTACACACAGCCAATGAGGCATGAAGCACAAACAGCGAGCGCCGCGTGGCTGGGATACCTCACCGGCTAATCCCACCATACACATGTAGCACTCACATTATGTGACCTCAGAGGGGCTGATGGTTATCATCTAAACCTTTCATTTTATAACTGATCTCAAATACACTAAACTACCAACAAACTAtttcattgtaaaaaataaaaaacacaccaTCTAAGATAACCCACACAAATATAATTCTAAAATCCATCTAATTAAGATGGTTAAATGGTTGAGTGGAACGGCCACATGGCAGTGACTAGAGACGGCGCTCTTGTAAGAGAAAGTAGCAGGTTAACGACCTCCGCAAACAGCTTTAAAAGTCTGTGGCAGGGCACAGCTCGTTAATATGCGTCAGGTTGAATTCCGGCCTAAGTACAGTTAGATAACCAAATGGGAGGGAATTTCAAGCCATGATCTGCATTCAGATAACCTCCTCACTCACCA
>TU1860813
TTTATTTCCCTGCTAAAGTAAATGATTCAGAGAAATCTATAAGTAGTACTTCAGTAAGGACACACCAGTTTCCTGTAAAGGATGAAAATAAGAGCTTGGCCTAAGTGGAAAACCACTGTATCCCCAAAATAGAGCCAGGGCACCCATGTGAAGAGCATTTGATGTATGAGCACAAATGACAGAGGTACAACAGAGCTAATTTGGAATCAAATCTCAGTGAGTTTTACAAGTACATTCCTCCACTCATTGTTATTGGAACATAAAGAACCAAGCTTTCTTTTTGATGTTTACTCAACCGTTATGACCACCATAAAAAATAAATTGATTAACATGTTTAAATAGGAAGagacaatttatgcttgatctaaAAATGTGGTAGGAGGCACCGTGTGGATGATGTGACGCAATTGCGGAGCCTACGGAGGAATGCAGAGGCCAAAATTAGCTCTGTACTGCGTCGCCGTAGCCTCAACTTGTGTAGCAATGGAGAGCTCCATTTAGCTCCATATAGCTCCGCAtttacatgattggttgacggtaggtgagggcgggaggtcctgtataaacacaaactcacttccttgacaacagctctgcgctgctccacgaagcgcaagaagtatgaatgccctgacttctgaaGAGGCCGTACCGCTgtaaatgctgcacggccaatGTAGACATCGGATTGACCAAGTAGTGCCTATATATGAACTTCATGGCCTGTGAAACGACATGCTGAAATCCAGAGCACTTATTTGGTGAGTTTAGGCACTTTTTTGTTTATGGTTTCTGTGATGTGCTGTTCAAACTGATTTTACTGTGTTGCTCTCCACAATTAACATCTCAGATGGTAGCGTAGGCCTACACCGTGAACATAACACAGTGACTCGTTTTGGGATGATCAGTTTGTTTTTATGCTGGACATTTGTTCATAAAACAATTCTAGTTCCCCTGAAATTAAACAAATAACTTAGATTTTATAAGACACTAGATTTATCCTATAATATTCTGTCCGTTTCACAAAACCACTTCTAACAAACactatttataataataataataataacaaaaattATAGCAAATAAAGACCATAAAATGGCAACCTTCCCAGGGATGCACTAAAAATTACCTGGACCTGTATCTTTGGGTGACATTTCTTAGGCAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037741.1 False 1212 mRNA 0.47 3 42367530 42374574
TU1860813 True 1171 lncRNA 0.40 1 42373990 42375160

Neighbor

gene id symbol gene type direction distance location
LOC110497897 LOC106593433 coding downstream 27708 42319096 ~ 42339822 (-)
LOC110497894 LOC106593636 coding downstream 154511 42190271 ~ 42213019 (-)
LOC118941476 LOC106611023 coding downstream 178033 42185201 ~ 42189497 (-)
LOC110498354 LOC106593417 coding downstream 193783 42172141 ~ 42173747 (-)
LOC110497892 LOC106593771 coding downstream 208804 42144572 ~ 42158726 (-)
LOC110497901 entpd5 coding upstream 25342 42399916 ~ 42414821 (-)
LOC110497902 aldh6a1 coding upstream 57410 42431984 ~ 42444258 (-)
LOC110497906 NA coding upstream 73803 42448377 ~ 42451017 (-)
LOC110497908 tmed8 coding upstream 80881 42455455 ~ 42459369 (-)
noxred1 noxred1 coding upstream 84877 42459451 ~ 42465605 (-)
G1626113 NA non-coding downstream 100402 42266920 ~ 42267128 (-)
G1626112 NA non-coding downstream 100670 42266369 ~ 42266860 (-)
G1626111 NA non-coding downstream 102748 42264571 ~ 42264782 (-)
G1626107 NA non-coding downstream 110053 42257226 ~ 42257477 (-)
G1626158 NA non-coding upstream 2465 42377039 ~ 42377273 (-)
G1626160 NA non-coding upstream 4080 42378654 ~ 42380435 (-)
G1626190 NA non-coding upstream 71039 42445613 ~ 42448304 (-)
LOC110498355 atg2b non-coding upstream 101544 42465705 ~ 42480874 (-)
G1626212 NA non-coding upstream 112148 42486722 ~ 42486974 (-)
G1626105 NA other downstream 111733 42255235 ~ 42255797 (-)
G1625428 arf6 other downstream 517097 41846255 ~ 41850433 (-)
G1625066 NA other downstream 1172771 41194433 ~ 41194759 (-)
LOC110497865 LOC106611002 other downstream 1205118 41144107 ~ 41162883 (-)
LOC110497863 LOC106596965 other downstream 1287431 41052866 ~ 41080347 (-)
G1626232 LOC106611303 other upstream 265875 42640449 ~ 42641273 (-)
G1626324 NA other upstream 384720 42759294 ~ 42838434 (-)
G1627068 NA other upstream 1034153 43408727 ~ 43409109 (-)
LOC110498001 NA other upstream 3629191 46003765 ~ 46008718 (-)
G1626154 NA non-coding downstream 74 42370814 ~ 42373916 (-)

Expression


Co-expression Network