LOC110497906


Basic Information

Item Value
gene id LOC110497906
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42448377 ~ 42451017 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469740.2
ACAGTACCAATGTGCGAAACAATAACAGTTGCCACAAAACACGGGTGAAAACAACACCCGGACAAAACCAGACGGAAACGTACCGACCTAAACAAataacaatcacacacaaagacatgggggaaacagggGGTTAAATACATGACCAGTAATTGGGAAATGAAAACCagacgagacaaaacaaatggacaatgaaaaatggatcagcgatggctagaagaccggcgacgtcgacttccaaacaccgcccgaacaagaagAGGCATCGACtttggcagaagtcgtgacatctAGTCCCAAGAAAAGGAAGCTATCTAGAGAGAACAGTGTTGTGGAGAAGACTGGAAAGATGAAGACAAATTGCAGAGACGGTCAGAATTCTCAATCAAATAAGTAATTTATTTCAAATGCCAGATATTCTGTTGTATATAAAACATTAATGATATTTTATTTTCAGTTTGTCCATAAAAGCGCTGGAGCCATAAGATGTGTCTGAGTAATCCCGAGATGGTCATTGTCATTGGAGGAGCGTATGACCAAACCCGCTGTGAGGACTCCCTATGGAAATAGGTGAGATGAGTCGACTGTTTACTAATATTGATAACTTGTGTAAAACAACTGGGATAGATTTTGTCCTGTGCCATCTTATTAAAATGCCCTAGTTTTGTCCTGTGCCATCCAAGCTGCTGTCCTGGAGACAAGGCCTACAGAAACGCTCTGTACATTTTTAACCCAGATTTTGAGCTCTGGTACCAACCCATTGTGGAGGGATCTGACCTCTACCTAGGATTGTGTCAATGTTCCTTGATTATATTTCTGTAGAGGCATTGGGCTATTACAATACTTTGCTTAATGTATTTAACCATTACAGGACGACAGTGTTTATTTAACAAACACATTTTATGTTTACATAAAACAGGCTCTAAACCATTTTTTTGTCCAACCGGTTGCTCATTTTTGGTGGCAGGAAGACTGCAATCTACCTGAACAACCTTAACATTTTGCGTCTCGGTAAGGCTGTGACAAAGAGTGGTGATTTGGATTACGCTACACAAAGCTAGTTACAACTTAATCTTCAAATGCAATTTAGTTTATTTTAGCAAAAGGCTTTATGGAGTGCACAGCTGTGAAATATGAGATCATGCCATCACTGCCTCGAGGATATCATGCAGCACTGCCAGTATCAGACAACAGGATGCTGGTCAGTGGAGGTTGTAGTGCTATTGGTGCCTTGCAGGACATCCATATCTTCAATGTGGGTTCTTTTCAGACACCAGTATGTGGAGTTCAGTGGTATCCCCTCTGCTCTGCGCCAAGCCTCGTGCCGGACACAGCATGAACAACCTGGGAGGTTCTGTCCTCCCAGGCACTGTCAAACAGAAGCAGGGCGAGCATACCAACACCCACAGCACTCTGCTGGTGTTTGGGGGCTCAGACTGCGCCGGGATCTTCTTCAATGACCCAGCGAAGTGCACAGTGGAGATCCCTGGAGATAAGAGACTGGACCTTAAGGAGAGACTATAACAGCCTTATGGGGAATAAGGGGGAAAAATTTGACTTTATATCCGTGTCTGGCTTACAAATAATTCTGAATGATATGAGTGAATGTATCATGGGCAGAACTAATACAGGGACTGTTGAGTCATTTTTATTTGCTCTTCTGTTACATTAGGCTTGGATGTAATTAAGTCTTCAGTAACAGTTTTATTGTGGCCACTGAAGGCTGTAGTCTAGCCTGATTTGCTCTTTTCTGGAGGGGGATGTTGATTGTCAGTTATGGTGCAAGTTATGCCTTTTTAATCACACTGTTGTCAGGTGTCTGACATTACATTATGGGTTGCTAACTTTTTTATATTGATTTTTAAGTGCCATTCTCCCCATCTGAGAAATGGTATAGGCACCAGATCTAACAAACAACATCTCTCCTGTGTTCTAGATATTTTCTCACCAATGTGTGTTGAAAGAAAATAACTTTCTATTTAGTTTACATTTTTTAAGCATGGGTTAATTAACTGCTGCATGATATTAGTTGAACTTCAGCTATTTTACTAAACCAATTATTAAACAAAGAGCAGACAGCCATTTCCACTTTCCTCATGTGTATACCAGTGGGCTGGTATTGGGCACTTTCATGTTGTCTATTGTATTTATCTTCACGAATCCACTATGTTCCAGTGTCATGTTGAGCATATGTCAAGATGGGGGAACGTGCTGTATCAGAGGTTAAAATGTACATATTCAAACTCAACT

Function

NR:

description
probable serine/threonine-protein kinase DDB_G0272254 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469740.2 True 2250 mRNA 0.41 3 42448377 42451017

Neighbor

gene id symbol gene type direction distance location
LOC110497902 aldh6a1 coding downstream 4119 42431984 ~ 42444258 (-)
LOC110497901 entpd5 coding downstream 33556 42399916 ~ 42414821 (-)
ngb1 ngb coding downstream 65112 42351397 ~ 42383265 (-)
LOC118941477 NA coding downstream 73803 42367530 ~ 42375160 (-)
LOC110497897 LOC106593433 coding downstream 108555 42319096 ~ 42339822 (-)
LOC110497908 tmed8 coding upstream 4438 42455455 ~ 42459369 (-)
noxred1 noxred1 coding upstream 8434 42459451 ~ 42465605 (-)
LOC110498355 atg2b coding upstream 14688 42465705 ~ 42480874 (-)
npc2 npc2 coding upstream 38840 42489857 ~ 42492062 (-)
eml5 LOC106591625 coding upstream 43441 42494458 ~ 42561969 (-)
G1626190 NA non-coding downstream 73 42445613 ~ 42448304 (-)
G1626160 NA non-coding downstream 67942 42378654 ~ 42380435 (-)
G1626158 NA non-coding downstream 71104 42377039 ~ 42377273 (-)
G1626154 NA non-coding downstream 74461 42370814 ~ 42373916 (-)
G1626212 NA non-coding upstream 35705 42486722 ~ 42486974 (-)
G1626254 NA non-coding upstream 113338 42564355 ~ 42565402 (-)
G1626231 NA non-coding upstream 135918 42586935 ~ 42588868 (-)
G1626267 NA non-coding upstream 139965 42590982 ~ 42591311 (-)
G1626105 NA other downstream 192580 42255235 ~ 42255797 (-)
G1625428 arf6 other downstream 597944 41846255 ~ 41850433 (-)
G1625066 NA other downstream 1253618 41194433 ~ 41194759 (-)
LOC110497865 LOC106611002 other downstream 1285965 41144107 ~ 41162883 (-)
LOC110497863 LOC106596965 other downstream 1368278 41052866 ~ 41080347 (-)
G1626232 LOC106611303 other upstream 189432 42640449 ~ 42641273 (-)
G1626324 NA other upstream 308277 42759294 ~ 42838434 (-)
G1627068 NA other upstream 957710 43408727 ~ 43409109 (-)
LOC110498001 NA other upstream 3552748 46003765 ~ 46008718 (-)

Expression


Co-expression Network