LOC110497908 (tmed8)


Basic Information

Item Value
gene id LOC110497908
gene name tmed8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42455455 ~ 42459369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574368.2
AAGTACCAAAAATCTGTTATTTTCCCTACGGGGATGTTTCTGCGCAGTCTGAACGGAGTTGACAGATAACGTTAGCTACATTTCCGGAGAAAACCTTGAAACTAGCCAAGCAGGAATCCAACAACTCATTATCACATGATTATCTGAGCGATGGAGAAATTAGAGGCTACATCGGAGCTTCAATCCAGATTGACAGCGTTGTCGGTTTCCTCTTTCCCCGGGATAACGTCGAAAAACTGGGAGACCAATCCTCTAGACAGGCTCCAGAGCACAGATCTCTCAAATAACTCCAACCACCCAATAAGCAACCCTGATATGGATGTAAGGAATGACACAGAGGGGTCGAGCCAGCCAGCTGAGGTTAATCAGGTGGCTCCTGGTGGGCAGCAGGCCATGGGGGGAGATGTTGAGGAGAACAGCCGAAGTGGGAATAGTCAAAACCctggagagagaaaagTCCAAATGCCCCCGCTAAAGCCTCCTTCCACATGGACGTCCATGGCAATGAAGGAGCTTAAGGCCAAGCTGCGACTGGAGAAGGACAGTGTGGTGGCAGTGTACAGAGGAGACATTATGACAGTACATGTGCCAACTGTCCCTGAGGGAAAGCGGGTGTGCTGGGAGTTTGCCACAGATAGCTATGACATAGGCTTTGGAATCTACTTTGACTGGACCCCTGTTACCAGCCGGGCCATCACGGTCCACATCAGCGAATCCagtgatgatgaagatgaggaagaTGAGCTAGAAGGACCTGTCAACACAGGGGATGTTGAGAAGGGGTCCAAATCATTGGCCAACTCCAACCTAGGGGAAATCTTACCTGTGTATCGTCAGGACAGTCACATGGCAGTGCAAGGTGGTAGTCATGAGTATCCAGGCGAGGGCACTTACCTTCTGAAGTTTGATAACTCCTACTCACTATGGCGAAATAAGACTCTGTACTACAGGGTGTATTACAGTGCCTGAGGATCCAGTCCACTATTGCATATGAATGTATGACTTCGCTTCAAATAATTGATATCTATTTTTGATTCCATAGAATAATTTAGGGTTAATTATAGGTGCATATATTTTTTATCACAATCAGCTGGTGTTGCTCGCTCTAaggctacatttaaaatgtgagAGGACTAGAGAATTATGgagcactttttttttttcatgtgttTTACTGTGAGCAAGATTTTATGAAGCTTTGTTTGTGCTATGTTCTGGTGTGTTTAAAAGTTTTGTGCAGTGAATTAAGGCAAATTGCCCATATTTTCAAGATGTATATTCTATATAGTATAGATTTTTATTCAGACACAATTTCAGTGGTGGCAGCAATCAGGGACACTGATAGAAAGATGATTTGCTTGGTCAAAAGCTTAAGCAGGAGAGGTGCTCCATAGAACTGGGAGGTTTTCTTTTTGTGTCGACACATGGTTTGATATCATATAATGTTGGTGTGTACTTCATGTATGTCAATTTTTtgccaaacatttttttttaaaacgtcAACTTGAATTATTAGTATGATGATCCAAATGCAGTATCTTAAACAATATTCCTGTACAACAATTCCATTATTTTTCTGCATATTGTGATTGGAATGAGCAATTATGTTGATGGAATGAGTCATTTATGTCGATGAAAGTGTATTAGATGTTTCTCTGAGTCCAATCCTAAAGCAAATGGTTGCCGCCTGTCTTATTGACAAATAAAAGCCATCCCTGGCACAAAAAGCTCTTATGTCAGATTGGTTCAATATTTACATTGCCAAATCCCTATTTAGTTAGCAGGTTGTCAGGTGATGGGTTGATCTTGGTGGACAATCACATGAGACTATTGTAGATACAGAAATATTTTGAATCTGTTAGTATGTGTGACTTGGATTGTCCCCTTTTTAAAGTAAAATGTTATGTACCAATCTCTGTAAAGGAAGCTCATTTTGAGTGTTTCGTTTCTGTGTTGTGTAGCGCTGTATGCACCTAATcatgttctaaaattgattatagCCGCCCACACGTAATTTCCAAAAATGTTTGTACCTCAAATGTCTGTGTTGTGCATGTTTCCAAAGATCATGAATTGTGCTGCTAAAATATAAGGCAACTGAAAATAAGTTTCAGTTTTGtactatacagtatgtgtttcTGTTATAAGCTTTCCTGAAAAGTTTTCACAATAAAGAGTCTCATTTGCATTACGGT

Function

symbol description
tmed8 Predicted to be active in Golgi membrane. Orthologous to human TMED8 (transmembrane p24 trafficking protein family member 8).

NR:

description
protein TMED8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574368.2 True 2195 mRNA 0.41 6 42455455 42459369

Neighbor

gene id symbol gene type direction distance location
LOC110497906 NA coding downstream 4438 42448377 ~ 42451017 (-)
LOC110497902 aldh6a1 coding downstream 11197 42431984 ~ 42444258 (-)
LOC110497901 entpd5 coding downstream 40634 42399916 ~ 42414821 (-)
ngb1 ngb coding downstream 72190 42351397 ~ 42383265 (-)
LOC118941477 NA coding downstream 80881 42367530 ~ 42375160 (-)
noxred1 noxred1 coding upstream 82 42459451 ~ 42465605 (-)
LOC110498355 atg2b coding upstream 6336 42465705 ~ 42480874 (-)
npc2 npc2 coding upstream 30488 42489857 ~ 42492062 (-)
eml5 LOC106591625 coding upstream 35089 42494458 ~ 42561969 (-)
LOC110497913 NA coding upstream 111459 42570828 ~ 42571457 (-)
G1626190 NA non-coding downstream 7151 42445613 ~ 42448304 (-)
G1626160 NA non-coding downstream 75020 42378654 ~ 42380435 (-)
G1626158 NA non-coding downstream 78182 42377039 ~ 42377273 (-)
G1626154 NA non-coding downstream 81539 42370814 ~ 42373916 (-)
G1626212 NA non-coding upstream 27353 42486722 ~ 42486974 (-)
G1626254 NA non-coding upstream 104986 42564355 ~ 42565402 (-)
G1626231 NA non-coding upstream 127566 42586935 ~ 42588868 (-)
G1626267 NA non-coding upstream 131613 42590982 ~ 42591311 (-)
G1626105 NA other downstream 199658 42255235 ~ 42255797 (-)
G1625428 arf6 other downstream 605022 41846255 ~ 41850433 (-)
G1625066 NA other downstream 1260696 41194433 ~ 41194759 (-)
LOC110497865 LOC106611002 other downstream 1293043 41144107 ~ 41162883 (-)
LOC110497863 LOC106596965 other downstream 1375356 41052866 ~ 41080347 (-)
G1626232 LOC106611303 other upstream 181080 42640449 ~ 42641273 (-)
G1626324 NA other upstream 299925 42759294 ~ 42838434 (-)
G1627068 NA other upstream 949358 43408727 ~ 43409109 (-)
LOC110498001 NA other upstream 3544396 46003765 ~ 46008718 (-)

Expression


Co-expression Network