npc2 (npc2)


Basic Information

Item Value
gene id npc2
gene name npc2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42489857 ~ 42492062 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160676.2
GGAAGTAAGGAGTGTCTGTGAGCCTACACCTGAAGCATAGAAGAGAGGGCCAGATTGCAGTAATGGATTTTCATGCTGCTTCCATCATTGTTCTGTTCTCCCTTATTGCTCTCACCTGCGCAGAACCTGTGAAATTTGCAGATTGTGGCTCTGATGTTGGTAAAGTGGTGATTGTTGACATCCAACCTTGTCCTAAACAACCATGTGAGCTCCATAAAGGACAGGCCTATGCTGTCAATGTGACATTCAACAGTGCGGTTGAGAGCCAGACGAGTAAAGCAATTGTCCACGGTGTGATTGCTGGCGTTCCCATCCCATTCCCCATCCCCATTGAAGATGGCTGCAAGTCTGGGATCGAGTGCCCCATTCAAAAGGCACAGAGCTATCACTATGTGACTCAGCTTCCTGTGAAGTCTGAGTACCCCTCTATCAAGCTGGTTGTTGAATGGGAGCTGAGAGATGACACTGGCAAAGACTTGTTCTGCATAAAGTTCCCAGTCCAGATCGTAAGCTGAGATTTGTCTGCAGTACCACCTGAAGGGAATTTTTAAAAAGGGATTCTAATGTGAACTGCTTAAACTGAGAATAACCCACATACACATTTCATAAATTATTCTATAATTTAAGAATTCTGATTTTTAAGTATTGATTCTGTAGGTTTTAAATGTATACTGTAGCTTTTTCAGTCATTTTAAAACTTAACTTCCCATACAGGCATTTTGAAATGTTGTGGCTGACTGTTTACTCATAAATGCATAAGTGGGTCATTCCACCAAATGAGTACCTAATAACTGTGGGTGCTTATATTTTTCCAATTCCAtacatgtacatgtgtgtattatatacatgtgtgaattggaaatgtgttttttgcatatccaaaCTCCTCCTGAGGttttttcaccttgttggctaagggattcaaactagcaaccttttggttactggcccaagtctctaaccactaggctacctggctaccttTTGCATCCCTTtatatattttaagtagaaattgtgcaccaatgtTGATTTGTGAAAGCCTGTtataaatgaagtgcccttttaAAATAAACTAGAATGAACATTCAATAAATCTGACTtttaatatgaataaagacttgctaaagtgaC

Function

symbol description
npc2 Enables cholesterol binding activity; cholesterol transfer activity; and enzyme binding activity. Involved in cholesterol homeostasis; cholesterol transport; and response to virus. Located in extracellular space and lysosome. Implicated in Niemann-Pick disease and Niemann-Pick disease type C2.

NR:

description
epididymal secretory protein E1 precursor

GO: NA

KEGG:

id description
K13443 NPC2; Niemann-Pick C2 protein

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160676.2 True 1133 mRNA 0.40 5 42489857 42492062
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110498355 atg2b coding downstream 8983 42465705 ~ 42480874 (-)
noxred1 noxred1 coding downstream 24252 42459451 ~ 42465605 (-)
LOC110497908 tmed8 coding downstream 30488 42455455 ~ 42459369 (-)
LOC110497906 NA coding downstream 38840 42448377 ~ 42451017 (-)
LOC110497902 aldh6a1 coding downstream 45599 42431984 ~ 42444258 (-)
eml5 LOC106591625 coding upstream 2396 42494458 ~ 42561969 (-)
LOC110497913 NA coding upstream 78766 42570828 ~ 42571457 (-)
LOC110497915 LOC106591465 coding upstream 109696 42601758 ~ 42604764 (-)
erg28 LOC106591002 coding upstream 176974 42669036 ~ 42671081 (-)
tgfb3 LOC106590795 coding upstream 272815 42764877 ~ 42786064 (-)
G1626212 NA non-coding downstream 2883 42486722 ~ 42486974 (-)
G1626190 NA non-coding downstream 41553 42445613 ~ 42448304 (-)
G1626160 NA non-coding downstream 109422 42378654 ~ 42380435 (-)
G1626158 NA non-coding downstream 112584 42377039 ~ 42377273 (-)
G1626254 NA non-coding upstream 72293 42564355 ~ 42565402 (-)
G1626231 NA non-coding upstream 94873 42586935 ~ 42588868 (-)
G1626267 NA non-coding upstream 98920 42590982 ~ 42591311 (-)
G1626288 NA non-coding upstream 155527 42647589 ~ 42647792 (-)
G1626291 NA non-coding upstream 158068 42650130 ~ 42650687 (-)
G1626105 NA other downstream 234060 42255235 ~ 42255797 (-)
G1625428 arf6 other downstream 639424 41846255 ~ 41850433 (-)
G1625066 NA other downstream 1295098 41194433 ~ 41194759 (-)
LOC110497865 LOC106611002 other downstream 1327445 41144107 ~ 41162883 (-)
G1626232 LOC106611303 other upstream 148387 42640449 ~ 42641273 (-)
G1626324 NA other upstream 267232 42759294 ~ 42838434 (-)
G1627068 NA other upstream 916665 43408727 ~ 43409109 (-)
LOC110498001 NA other upstream 3511703 46003765 ~ 46008718 (-)
G1631005 NA other upstream 4127145 46619207 ~ 46629506 (-)

Expression

npc2(npc2) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 600.
End of interactive chart.

npc2(npc2) Expression in each Bioproject

Bar chart with 21 bars.
npc2(npc2) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20000.
End of interactive chart.

Co-expression Network