LOC110497915 (LOC106591465)


Basic Information

Item Value
gene id LOC110497915
gene name LOC106591465
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42601758 ~ 42604764 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574383.2
GCAATCACGTGACTTAACCCGGAACTGAGCATCATTTCGTGTTTTTTTTTGCATCATTTAGTATCGCGCTAGCTTGGTGGTGACTGACTGTAGCGTACAGAGCCAGCTACAGCATGTCTAGATTTTGTATATTACTAATACTTGTTTCTGTGATTTTTGATTCGACCTTTTCTATTACGTTCTATTTACCGGTGAATCTTAGAAAATGTTTGCGGGAAGAGATCCACAAAGACGTGCTGGTTACAGGCGAATACGAAGTTAGCGACCAACCAAATGCGAAAACCAATCTCAAGATCACAGATTCATCAGGTCACACCTTGTACTCCAAGGAGGATGCTTCAAAGGGAAAATTTGCCTTTACAACTGAGGACTATGATATGTTTGAGGTTTGCTTTGAAAGCAAATCCCCCCTAGGTACTGGAAGGGTCCCAGACCAGCTAGTCAATTTAGACATGAAGCATGGTGTGGAGGCAAAGAATTACGAAGAGATTGCAAAAGTTGAGAAGCTGAAGCCCCTAGAAGTTGAACTAAGACGCCTCGAGGACTTATCGGAGTCCATTGTGAATGATTTTGCCTACATGAAGAAGCGTGAAGAGGAAATGAGGGACACAAATGAATCCACCAACACGCGTGTCCTGTACTTCAGTATCTTCTCTATGTGCTGTCTAATTGGGCTGGCAACATGGCAGGTCTTCTATCTGCGGCGTTTCTTCAAGGCGAAGAAGCTGATTGAGTAAACCCATCAATGAAACGAGGACCATCATGTTGAGGACTTTTGGGAAATGGTGTTTGCTGTACAATTTGTGAAACAACAGGTTTTTTTTGGATGGGGGGGGGCTCCCTTTACAATTTAAATGTAAAATGATTTGTCTTCTTTCAGCTTCAGTTTTTTTACCAGCCCCTTATCTCTGGCACTATTTGTTTTTATTAGAAATACAACCAAATGTACTTTGATACATATTGGTCTGATATTTTCTCATTCAATATTCTTGTTACTATTTTTGTTGTAGTAAATGACTAATACTGTATGAAAATAAACATTACATGTTTAATGAGTGCACAAAAACTCCCCTTCAAACGTTCAGATATTGTTAGGTGAAAATAACATTTCCCCAATATGTCAGGTACATGGTTGTTTTTTATTAAAAGACGTTTTCACTTTGATCTCA

Function

NR:

description
transmembrane emp24 domain-containing protein 10

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20352 TMED10, ERV25; p24 family protein delta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574383.2 True 1169 mRNA 0.40 5 42601758 42604764

Neighbor

gene id symbol gene type direction distance location
LOC110497913 NA coding downstream 30301 42570828 ~ 42571457 (-)
eml5 LOC106591625 coding downstream 39789 42494458 ~ 42561969 (-)
npc2 npc2 coding downstream 109696 42489857 ~ 42492062 (-)
LOC110498355 atg2b coding downstream 120884 42465705 ~ 42480874 (-)
noxred1 noxred1 coding downstream 136153 42459451 ~ 42465605 (-)
erg28 LOC106591002 coding upstream 64272 42669036 ~ 42671081 (-)
tgfb3 LOC106590795 coding upstream 160113 42764877 ~ 42786064 (-)
LOC110498358 LOC106590063 coding upstream 495461 43100225 ~ 43110498 (-)
LOC110497926 LOC106589845 coding upstream 520670 43125434 ~ 43135492 (-)
LOC110498359 LOC106599825 coding upstream 531436 43136200 ~ 43139430 (-)
G1626267 NA non-coding downstream 10447 42590982 ~ 42591311 (-)
G1626231 NA non-coding downstream 12890 42586935 ~ 42588868 (-)
G1626254 NA non-coding downstream 36356 42564355 ~ 42565402 (-)
G1626212 NA non-coding downstream 114784 42486722 ~ 42486974 (-)
G1626288 NA non-coding upstream 42825 42647589 ~ 42647792 (-)
G1626291 NA non-coding upstream 45366 42650130 ~ 42650687 (-)
G1626294 NA non-coding upstream 49745 42654509 ~ 42655253 (-)
G1626296 NA non-coding upstream 51591 42656355 ~ 42657840 (-)
G1626297 NA non-coding upstream 53144 42657908 ~ 42664575 (-)
G1626105 NA other downstream 345961 42255235 ~ 42255797 (-)
G1625428 arf6 other downstream 751325 41846255 ~ 41850433 (-)
G1625066 NA other downstream 1406999 41194433 ~ 41194759 (-)
LOC110497865 LOC106611002 other downstream 1439346 41144107 ~ 41162883 (-)
G1626232 LOC106611303 other upstream 35685 42640449 ~ 42641273 (-)
G1626324 NA other upstream 154530 42759294 ~ 42838434 (-)
G1627068 NA other upstream 803963 43408727 ~ 43409109 (-)
LOC110498001 NA other upstream 3399001 46003765 ~ 46008718 (-)
G1631005 NA other upstream 4014443 46619207 ~ 46629506 (-)

Expression


Co-expression Network