LOC110497916 (LOC106591288)


Basic Information

Item Value
gene id LOC110497916
gene name LOC106591288
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42610081 ~ 42619496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954868.1
gcaaagaggcactgagtttgaagCACTGAATCTCCTGTTGGGGACACCCTGACGTACTATCAGAAGACACAAGACGACTCTATCTCCAGCTCCTCAGCTTCGCCATCAGAGAGTAATGCACAGGAGCTCTGCCCAGACATGGATACACCAGCCACTCCATTTGTTCCAACAGTGACTGCAATTTCCACAACCCCGGATTTGCTATGGATGGTCCAGCCGACCATTATaacgtctctctccccatctctgagTAGCAAACAAACCAATGAAGCAAAGAGCTCTCACCAGTCAACACCCAAAGCGGGCGAGAGCAGGGGAAAAAACACTGGCAGAAAGGGGAAAGCCGAGCAGTTATCtccagaggaagaagagaagaagagggtgaggagagagagaaataaaatggctGCAGCCAAATGTCGCAACAGACGGAGGGAACTCACTGATTCACTGCAAACTGAGACTGATCAGCTGGAGGAAGACAAAGCAGCTCTGCAGACAGAGATAGCCAACCTcctcaaagagaaagagaggctgGAATTTGTCCTCGCTACTCATAAACCTGTGTGCCAAATTACAGAAGAATTGGATTCCATCTTCCAGGAGCCCAGTAGGTCTCCAGACCTCCCCCCCAGCCCGGAGGGGGGTAAACTCCCTGAGGACAGTGCTCAGGAAGCCCCCTCGCTCCAGGACATGGACATCCTCAATGACACGTCCACAGCCATCTCTGGAAACTCCAACATCCTACTCTGTGCCAGTATTGAAGTGAACATCTGTGACCTTGAGCCCTCTTTGGACATGAAGGAGGGTCTCCTGGACAATCTGCTGcccagcatggaggaggaagtccCCACAGAGACTGCCCACTCTGTCCCAGATATTGACCTGAGTGGCTCTCTTGGGGTTACGGACTGGGAAACCCTGTACAAATCTGTGTCTAATGACCTAGAGCCCTTGAGCACTCCTGTTGTGACCTCCACCCCCACATGTAGCAGCTACCTGTCCGTTTTCACATTCTCCTGTCCTGATCTTGACTCCTTTGGAGTGGGGTTTGATGGTCGCAAAAGTGGAGGGGGCAAGGCTGAATCTGTTGATATCCTcaactctccaaccctgttggcCTTATAATGTAAGCATAGGGAGTTGATTGGTTTATCACTTTAGTTGGTTTTCCTGACTGTGATAGGCTATCAGAGACTTTCTGTGGTTTCAGCACTTCAGTTTTATTATTACACTCATTAAATGTTTTTGACTAAGCAAGTATAAACTTCTTCCAGATACAATTGATATAGCTAAGAGCATGGCTATACACTTTACTGATAGGGAGTAAGTATGTTCTGGTTTTAAACGCATGCAGAGGAATTCCAAATAATTGTCATATTTCATATATGTTTGATCTGGTACTAGATCTATGCTGTATTGTGGAATTGACTGTACGGTTTTGTGCTTCAATGGGAATAGTATATCAATAGCTATGAATGTTGTGTTATAGTTCAAGTATACATCCATGTTCGGTAGGTACATACCTCAACGTCATCAACTGTGATTTGACCTCATTGTTACAATGTTTAGAGTTTTCAATGAAAACATCCAGTGCTATATTTATCAAGATGTAAATTATgataatttatttttttaccttcaaTTTTGACTTGTTTGTCAAGTTAAAGTAAAATGAGCATCGATTGctgattgatacattttcaaattAAATATTAATTCAAAGTGA
>XM_021574385.2
ctgctgaagaaaaaaaaaatttgACGAGAAGGGTGAACATTCTGTTTAGCTAAGGATTTTTTAAGACATGTTTCTCAACCCTGACTTCGATTCAATGTCTCGCTGTAGCACTGAATCTCCTGTTGGGGACACCCTGACGTACTATCAGAAGACACAAGACGACTCTATCTCCAGCTCCTCAGCTTCGCCATCAGAGAGTAATGCACAGGAGCTCTGCCCAGACATGGATACACCAGCCACTCCATTTGTTCCAACAGTGACTGCAATTTCCACAACCCCGGATTTGCTATGGATGGTCCAGCCGACCATTATaacgtctctctccccatctctgagTAGCAAACAAACCAATGAAGCAAAGAGCTCTCACCAGTCAACACCCAAAGCGGGCGAGAGCAGGGGAAAAAACACTGGCAGAAAGGGGAAAGCCGAGCAGTTATCtccagaggaagaagagaagaagagggtgaggagagagagaaataaaatggctGCAGCCAAATGTCGCAACAGACGGAGGGAACTCACTGATTCACTGCAAACTACTGATCAGCTGGAGGAAGACAAAGCAGCTCTGCAGACAGAGATAGCCAACCTcctcaaagagaaagagaggctgGAATTTGTCCTCGCTACTCATAAACCTGTGTGCCAAATTACAGAAGAATTGGATTCCATCTTCCAGGAGCCCAGTAGGTCTCCAGACCTCCCCCCCAGCCCGGAGGGGGGTAAACTCCCTGAGGACAGTGCTCAGGAAGCCCCCTCGCTCCAGGACATGGACATCCTCAATGACACGTCCACAGCCATCTCTGGAAACTCCAACATCCTACTCTGTGCCAGTATTGAAGTGAACATCTGTGACCTTGAGCCCTCTTTGGACATGAAGGAGGGTCTCCTGGACAATCTGCTGcccagcatggaggaggaagtccCCACAGAGACTGCCCACTCTGTCCCAGATATTGACCTGAGTGGCTCTCTTGGGGTTACGGACTGGGAAACCCTGTACAAATCTGTGTCTAATGACCTAGAGCCCTTGAGCACTCCTGTTGTGACCTCCACCCCCACATGTAGCAGCTACCTGTCCGTTTTCACATTCTCCTGTCCTGATCTTGACTCCTTTGGAGTGGGGTTTGATGGTCGCAAAAGTGGAGGGGGCAAGGCTGAATCTGTTGATATCCTcaactctccaaccctgttggcCTTATAATGTAAGCATAGGGAGTTGATTGGTTTATCACTTTAGTTGGTTTTCCTGACTGTGATAGGCTATCAGAGACTTTCTGTGGTTTCAGCACTTCAGTTTTATTATTACACTCATTAAATGTTTTTGACTAAGCAAGTATAAACTTCTTCCAGATACAATTGATATAGCTAAGAGCATGGCTATACACTTTACTGATAGGGAGTAAGTATGTTCTGGTTTTAAACGCATGCAGAGGAATTCCAAATAATTGTCATATTTCATATATGTTTGATCTGGTACTAGATCTATGCTGTATTGTGGAATTGACTGTACGGTTTTGTGCTTCAATGGGAATAGTATATCAATAGCTATGAATGTTGTGTTATAGTTCAAGTATACATCCATGTTCGGTAGGTACATACCTCAACGTCATCAACTGTGATTTGACCTCATTGTTACAATGTTTAGAGTTTTCAATGAAAACATCCAGTGCTATATTTATCAAGATGTAAATTATgataatttatttttttaccttcaaTTTTGACTTGTTTGTCAAGTTAAAGTAAAATGAGCATCGATTGctgattgatacattttcaaattAAATATTAATTCAAAGTGA
>XM_021574384.2
aaaaaaaaatttgACGAGAAGGGTGAACATTCTGTTTAGCTAAGGATTTTTTAAGACATGTTTCTCAACCCTGACTTCGATTCAATGTCTCGCTGTAGCACTGAATCTCCTGTTGGGGACACCCTGACGTACTATCAGAAGACACAAGACGACTCTATCTCCAGCTCCTCAGCTTCGCCATCAGAGAGTAATGCACAGGAGCTCTGCCCAGACATGGATACACCAGCCACTCCATTTGTTCCAACAGTGACTGCAATTTCCACAACCCCGGATTTGCTATGGATGGTCCAGCCGACCATTATaacgtctctctccccatctctgagTAGCAAACAAACCAATGAAGCAAAGAGCTCTCACCAGTCAACACCCAAAGCGGGCGAGAGCAGGGGAAAAAACACTGGCAGAAAGGGGAAAGCCGAGCAGTTATCtccagaggaagaagagaagaagagggtgaggagagagagaaataaaatggctGCAGCCAAATGTCGCAACAGACGGAGGGAACTCACTGATTCACTGCAAACTGAGACTGATCAGCTGGAGGAAGACAAAGCAGCTCTGCAGACAGAGATAGCCAACCTcctcaaagagaaagagaggctgGAATTTGTCCTCGCTACTCATAAACCTGTGTGCCAAATTACAGAAGAATTGGATTCCATCTTCCAGGAGCCCAGTAGGTCTCCAGACCTCCCCCCCAGCCCGGAGGGGGGTAAACTCCCTGAGGACAGTGCTCAGGAAGCCCCCTCGCTCCAGGACATGGACATCCTCAATGACACGTCCACAGCCATCTCTGGAAACTCCAACATCCTACTCTGTGCCAGTATTGAAGTGAACATCTGTGACCTTGAGCCCTCTTTGGACATGAAGGAGGGTCTCCTGGACAATCTGCTGcccagcatggaggaggaagtccCCACAGAGACTGCCCACTCTGTCCCAGATATTGACCTGAGTGGCTCTCTTGGGGTTACGGACTGGGAAACCCTGTACAAATCTGTGTCTAATGACCTAGAGCCCTTGAGCACTCCTGTTGTGACCTCCACCCCCACATGTAGCAGCTACCTGTCCGTTTTCACATTCTCCTGTCCTGATCTTGACTCCTTTGGAGTGGGGTTTGATGGTCGCAAAAGTGGAGGGGGCAAGGCTGAATCTGTTGATATCCTcaactctccaaccctgttggcCTTATAATGTAAGCATAGGGAGTTGATTGGTTTATCACTTTAGTTGGTTTTCCTGACTGTGATAGGCTATCAGAGACTTTCTGTGGTTTCAGCACTTCAGTTTTATTATTACACTCATTAAATGTTTTTGACTAAGCAAGTATAAACTTCTTCCAGATACAATTGATATAGCTAAGAGCATGGCTATACACTTTACTGATAGGGAGTAAGTATGTTCTGGTTTTAAACGCATGCAGAGGAATTCCAAATAATTGTCATATTTCATATATGTTTGATCTGGTACTAGATCTATGCTGTATTGTGGAATTGACTGTACGGTTTTGTGCTTCAATGGGAATAGTATATCAATAGCTATGAATGTTGTGTTATAGTTCAAGTATACATCCATGTTCGGTAGGTACATACCTCAACGTCATCAACTGTGATTTGACCTCATTGTTACAATGTTTAGAGTTTTCAATGAAAACATCCAGTGCTATATTTATCAAGATGTAAATTATgataatttatttttttaccttcaaTTTTGACTTGTTTGTCAAGTTAAAGTAAAATGAGCATCGATTGctgattgatacattttcaaattAAATATTAATTCAAAGTGA

Function

NR:

description
proto-oncogene c-Fos-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954868.1 False 1729 mRNA 0.45 5 42610081 42619496
XM_021574385.2 False 1811 mRNA 0.44 4 42616564 42619496
XM_021574384.2 True 1804 mRNA 0.44 4 42616574 42619496

Neighbor

gene id symbol gene type direction distance location
LOC110497914 nek9 coding upstream 21204 42577784 ~ 42588877 (+)
LOC110497912 LOC106591546 coding upstream 39087 42564318 ~ 42570994 (+)
isca2 LOC106591720 coding upstream 116010 42492218 ~ 42494071 (+)
LOC110497909 gskip coding upstream 125350 42481002 ~ 42484731 (+)
gstz1 gstz1 coding upstream 161790 42444439 ~ 42448291 (+)
LOC110497917 atf3 coding downstream 1074 42620570 ~ 42628100 (+)
LOC110497918 LOC106591116 coding downstream 16949 42636445 ~ 42666725 (+)
ttll5 ttll5 coding downstream 51744 42671240 ~ 42765750 (+)
LOC110497923 LOC106590872 coding downstream 171459 42790955 ~ 42811478 (+)
LOC110498356 NA coding downstream 243156 42862652 ~ 42877342 (+)
G1625888 NA non-coding upstream 20397 42589302 ~ 42589684 (+)
G1625828 LOC106611036 non-coding upstream 111630 42497955 ~ 42498451 (+)
G1625813 NA non-coding upstream 112799 42495653 ~ 42497282 (+)
G1625823 NA non-coding upstream 134288 42475532 ~ 42475793 (+)
G1625822 NA non-coding upstream 134833 42475040 ~ 42475248 (+)
G1625915 NA non-coding downstream 19035 42638531 ~ 42638756 (+)
G1625918 NA non-coding downstream 22481 42641977 ~ 42642356 (+)
G1625919 NA non-coding downstream 23082 42642578 ~ 42643263 (+)
G1625923 NA non-coding downstream 30349 42649845 ~ 42650111 (+)
G1625929 NA non-coding downstream 36397 42655893 ~ 42656209 (+)
G1625710 NA other upstream 358510 42250731 ~ 42251571 (+)
G1624524 NA other upstream 572963 42036328 ~ 42037118 (+)
G1624565 LOC100846954 other upstream 574137 42035353 ~ 42035944 (+)
tmem260 LOC106593970 other upstream 580575 41988770 ~ 42029506 (+)
G1624560 NA other upstream 599751 42009961 ~ 42010330 (+)
LOC110497931 LOC106589425 other downstream 692344 43279273 ~ 43440028 (+)
G1627319 NA other downstream 1195230 43814593 ~ 43816501 (+)
G1628073 LOC106610840 other downstream 1794826 44414322 ~ 44448672 (+)
G1628486 NA other downstream 2063866 44683362 ~ 44748925 (+)
G1628488 NA other downstream 2068886 44688382 ~ 44747446 (+)

Expression


Co-expression Network