Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110497917 |
| gene name | atf3 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 42620570 ~ 42628100 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| atf3 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within response to virus. Predicted to be active in nucleus. Is expressed in brain; eye; and retina. Orthologous to human ATF3 (activating transcription factor 3). |
| description |
|---|
| jun dimerization protein 2 |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K09033 | JDP2; jun dimerization protein 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021574387.2 | True | 855 | mRNA | 0.52 | 4 | 42620570 | 42628100 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110497916 | LOC106591288 | coding | upstream | 1074 | 42610081 ~ 42619496 (+) |
| LOC110497914 | nek9 | coding | upstream | 31693 | 42577784 ~ 42588877 (+) |
| LOC110497912 | LOC106591546 | coding | upstream | 49576 | 42564318 ~ 42570994 (+) |
| isca2 | LOC106591720 | coding | upstream | 126499 | 42492218 ~ 42494071 (+) |
| LOC110497909 | gskip | coding | upstream | 135839 | 42481002 ~ 42484731 (+) |
| LOC110497918 | LOC106591116 | coding | downstream | 8345 | 42636445 ~ 42666725 (+) |
| ttll5 | ttll5 | coding | downstream | 43140 | 42671240 ~ 42765750 (+) |
| LOC110497923 | LOC106590872 | coding | downstream | 162855 | 42790955 ~ 42811478 (+) |
| LOC110498356 | NA | coding | downstream | 234552 | 42862652 ~ 42877342 (+) |
| LOC110497924 | esrrb | coding | downstream | 354145 | 42982245 ~ 43039659 (+) |
| G1625888 | NA | non-coding | upstream | 30886 | 42589302 ~ 42589684 (+) |
| G1625828 | LOC106611036 | non-coding | upstream | 122119 | 42497955 ~ 42498451 (+) |
| G1625813 | NA | non-coding | upstream | 123288 | 42495653 ~ 42497282 (+) |
| G1625823 | NA | non-coding | upstream | 144777 | 42475532 ~ 42475793 (+) |
| G1625822 | NA | non-coding | upstream | 145322 | 42475040 ~ 42475248 (+) |
| G1625915 | NA | non-coding | downstream | 10431 | 42638531 ~ 42638756 (+) |
| G1625918 | NA | non-coding | downstream | 13877 | 42641977 ~ 42642356 (+) |
| G1625919 | NA | non-coding | downstream | 14478 | 42642578 ~ 42643263 (+) |
| G1625923 | NA | non-coding | downstream | 21745 | 42649845 ~ 42650111 (+) |
| G1625929 | NA | non-coding | downstream | 27793 | 42655893 ~ 42656209 (+) |
| G1625710 | NA | other | upstream | 368999 | 42250731 ~ 42251571 (+) |
| G1624524 | NA | other | upstream | 583452 | 42036328 ~ 42037118 (+) |
| G1624565 | LOC100846954 | other | upstream | 584626 | 42035353 ~ 42035944 (+) |
| tmem260 | LOC106593970 | other | upstream | 591064 | 41988770 ~ 42029506 (+) |
| G1624560 | NA | other | upstream | 610240 | 42009961 ~ 42010330 (+) |
| LOC110497931 | LOC106589425 | other | downstream | 683740 | 43279273 ~ 43440028 (+) |
| G1627319 | NA | other | downstream | 1186626 | 43814593 ~ 43816501 (+) |
| G1628073 | LOC106610840 | other | downstream | 1786222 | 44414322 ~ 44448672 (+) |
| G1628486 | NA | other | downstream | 2055262 | 44683362 ~ 44748925 (+) |
| G1628488 | NA | other | downstream | 2060282 | 44688382 ~ 44747446 (+) |
