erg28 (LOC106591002)


Basic Information

Item Value
gene id erg28
gene name LOC106591002
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42669036 ~ 42671081 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574396.2
ATGAAGCCATCTTCTGAGCTCTATAATTGGCCAAATTGAATGTCCATATCAGCTAGTTATTGAGCGACAGTACAGTTCGCACAGTTCACACGGTATTCTCAATCTCCAAACATTGGCAATGTTTTTACAGACATGTTGACATTATATGTCTATTGATTTCGACTCGCTGATCACTGTCGTATCACTGTCGTAGAAGGTGCATCCCACAGAAGGCAAGGATGAGTCGTTTTCTGAATGTTCTGCGGAGTTGGTTGGTCATGGTGTCTGTCATTGCCATGGGAAACACCGTCCAGAGTTTCAGAGATCACAGCTTCCTCTCTGAGAAACTCTACACGGGGACACCAGAGTTTGTAAATGGCCTCCAAGCAAGAACATTTGGAATCTGGACATTGTTGTCGTCAATTATCCGCTGCGCGTGCGCCATAGACATTCAGAACAAAACGCTCTATCACATCACCCTGTGGACATTTGTACTGGCTCTGGGACACTTCCTGTCTGAAGCCTTCATCTACAAAACGGCACCTCTGACCATTGGTGTTATGGCACCTCTCATTGTGGCGAGTTTCTCTATCGTGGGAATGCTGATTGGGTTGCAGTGTGTTCCAGAGCATCAGGAAGAGGTGGGTGTACGGCAGAAGAAGCGGAACTGATTCCAAGCAGCAGAAAACTGTTTTAGCCCAACTCTAGAGAAAGCTGCGGGATAGTCTACTGCTTCTTGCCTTGAAGAATGAGTGGTATATTTACTGTATGTACACAAACACAAGAGTCCAATATGTGTGAAATTTTTAAGACTGGATATGCAATAAGTGGGATTTATTTTGCAGGTGACTTGTTCCTGTGCTACGTGATATGTACATGTGCTACAATATACTATGGTTTTTATGGCTACAGCTGTTTCACTCTTACACTGAAAATTGAACAGCGATTGTCTGTCAATGTTTCATGATGTGCAATAATGCATAAATGTAGAGATGATTTATGTATTAATTATGGTTTGATTGTGTGATAGGGCATGGGACTTGTGGATTTTGACATCTGTCATTCACAGTACTTTAATGGAGGATCTCAACATTGGGCCTTTTGTATTGCTTTCTAAACTGCTCTGTGTGATTTCTGTATGTTACTGGATTGTGTCTATGGTGTAACATGTCCATGAATAAAATAACAGAGCATTTttctcaatttaaaaaataaaaaaacttttaGTTCACCAGATTACCAGGTGCAATTGTT
>XM_036954869.1
GATGAATGGGACGATGATGAAGCCATCTTCTGAGCTCTATAATTGGCCAAATTGAATGTCCATATCAGCTAGTTATTGAGCGACAGTACAGTTCGCACAGTTCACACGGTATTCTCAATCTCCAAACATTGGCAATGTTTTTACAGACATGTTGACATTATATGTCTATTGATTTCGACTCGCTGATCACTGTCGTATCACTGTCGTAGAAGGTGCATCCCACAGAAGGCAAGGATGAGTCGTTTTCTGAATGTTCTGCGGAGTTGGTTGGTCATGGTGTCTGTCATTGCCATGGGAAACACCGTCCAGAGTTTCAGAGATCACAGCTTCCTCTCTGAGAAACTCTACACGGGGACACCAGAGTTTGTAAATGGCCTCCAAGCAAGAACATTTGGAATCTGGACATTGTTGTCGTCAATTATCCGCTGCGCGTGCGCCATAGACATTCAGAACAAAACGCTCTATCACATCACCCTGTGGACATTTGTACTGGCTCTGGGACACTTCCTGTCTGAAGCCTTCATCTACAAAACGGCACCTCTGACCATTGGTGTTATGGCACCTCTCATTGTGGCGAGTTTCTCTATCGTGGGAATGCTGATTGGGTTGCAGTGTGTTCCAGAGCATCAGGAAGAGGTGACTTGTTCCTGTGCTACGTGATATGTACATGTGCTACAATATACTATGGTTTTTATGGCTACAGCTGTTTCACTCTTACACTGAAAATTGAACAGCGATTGTCTGTCAATGTTTCATGATGTGCAATAATGCATAAATGTAGAGATGATTTATGTATTAATTATGGTTTGATTGTGTGATAGGGCATGGGACTTGTGGATTTTGACATCTGTCATTCACAGTACTTTAATGGAGGATCTCAACATTGGGCCTTTTGTATTGCTTTCTAAACTGCTCTGTGTGATTTCTGTATGTTACTGGATTGTGTCTATGGTGTAACATGTCCATGAATAAAATAACAGAGCATTTttctcaatttaaaaaataaaaaaacttttaGTTCACCAGATTACCAGGTGCAATTGTT
>TU1860903
AGCGACAGTACAGTTCGCACAGTTCACACGGTATTCTCAATCTCCAAACATTGGCAATGTTTTTACAGACATGTTGACATTATATGTCTATTGATTTCGACTCGCTGATCACTGTCGTATCACTGTCGTAGAAGAAGGCAAGGATGAGTCGTTTTCTGAATGTTCTGCGGAGTTGGTTGGTCATGGTGTCTGTCATTGCCATGGGAAACACCGTCCAGAGTTTCAGAGATCACAGCTTCCTCTCTGAGAAACTCTACACGGGGACACCAGAGTTTGGCTCTATCACATCACCCTGTGGACATTTGTACTGGCTCTGGGACACTTCCTGTCTGAAGCCTTCATCTACAAAACGGCACCTCTGACCATTGGTGTTATGGCACCTCTCATTGTGGCGAGTTTCTCTATCGTGGGAATGCTGATTGGGTTGCAGTGTGTTCCAGAGCATCAGGAAGAGGTGACTTGTTCCTGTGCTACGTGATATGTACATGTGCTACAATATACTATGGTTTTTATGGCTACAGCTGTTTCACTCTTACACTGAAAATTGAACAGCGATTGTCTGTCAATGTTTCATGATGTGCAATAATGCATAAATGTAGAGATGATTTATGTATTAATTATGGTTTGATTGTGTGATAGGGCATGGGACTTGTGGATTTTGACATCTGTCATTCACAGTACTTTAATGGAGGATCTCAACATTGGGCCTAACATGTCCATGAATAAAATAACAGAGCATTTttctcaatttaaaaaataaaaaaacttttaGTTCACCAGA

Function

NR:

description
PREDICTED: probable ergosterol biosynthetic protein 28 isoform X2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574396.2 False 1233 mRNA 0.41 5 42669036 42671065
XM_036954869.1 False 1045 mRNA 0.42 6 42669036 42671081
TU1860903 True 781 lncRNA 0.42 6 42669054 42671003

Neighbor

gene id symbol gene type direction distance location
LOC110497915 LOC106591465 coding downstream 64272 42601758 ~ 42604764 (-)
LOC110497913 NA coding downstream 97579 42570828 ~ 42571457 (-)
eml5 LOC106591625 coding downstream 107067 42494458 ~ 42561969 (-)
npc2 npc2 coding downstream 176974 42489857 ~ 42492062 (-)
LOC110498355 atg2b coding downstream 188162 42465705 ~ 42480874 (-)
tgfb3 LOC106590795 coding upstream 93796 42764877 ~ 42786064 (-)
LOC110498358 LOC106590063 coding upstream 429144 43100225 ~ 43110498 (-)
LOC110497926 LOC106589845 coding upstream 454353 43125434 ~ 43135492 (-)
LOC110498359 LOC106599825 coding upstream 465119 43136200 ~ 43139430 (-)
LOC110497927 lrrc74a coding upstream 470441 43141522 ~ 43148464 (-)
G1626299 NA non-coding downstream 3815 42664867 ~ 42665221 (-)
G1626297 NA non-coding downstream 4461 42657908 ~ 42664575 (-)
G1626296 NA non-coding downstream 11196 42656355 ~ 42657840 (-)
G1626294 NA non-coding downstream 13783 42654509 ~ 42655253 (-)
G1626291 NA non-coding downstream 18349 42650130 ~ 42650687 (-)
G1626300 NA non-coding upstream 429 42671510 ~ 42672284 (-)
G1626303 NA non-coding upstream 5326 42676407 ~ 42676971 (-)
G1626306 NA non-coding upstream 8728 42679809 ~ 42680031 (-)
G1626307 NA non-coding upstream 9001 42680082 ~ 42680822 (-)
G1626308 NA non-coding upstream 9785 42680866 ~ 42681213 (-)
G1626232 LOC106611303 other downstream 27763 42640449 ~ 42641273 (-)
G1626105 NA other downstream 413239 42255235 ~ 42255797 (-)
G1625428 arf6 other downstream 818603 41846255 ~ 41850433 (-)
G1625066 NA other downstream 1474277 41194433 ~ 41194759 (-)
G1626324 NA other upstream 88213 42759294 ~ 42838434 (-)
G1627068 NA other upstream 737646 43408727 ~ 43409109 (-)
LOC110498001 NA other upstream 3332684 46003765 ~ 46008718 (-)
G1631005 NA other upstream 3948126 46619207 ~ 46629506 (-)
G1631120 LOC106612182 other upstream 4159253 46830334 ~ 46830650 (-)

Expression


Co-expression Network