tgfb3 (LOC106590795)


Basic Information

Item Value
gene id tgfb3
gene name LOC106590795
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42764877 ~ 42786064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574394.2
TACAAGACTCTGTTGCGCAAAGGGGACAGGAGCGTGAGGGAGAGCGGCACTGACCTTACACCAGCAAAAGTTGATGGAAAAGAAAAAATGCAATGGAGAAAGTACATTTTGTCATGATGAACGAATGACGAGGGAAAACGGAAGATGTGTGACACAACATTTGAAGGAAGAATAGAAAGACGACAGATTGAGTGAAAAGGGGTCTCAGATAAGATAAAGATAATATTCAAGAATGATCTGGACTATTCTTGGAATGGACACCCGGATAGCACTCAGATGACACTAGCCCTATATTGACAAGATGGGTTTCCTCGGGGGAAAGGACTCATTGACCTCCTGAATGCAAAGAGAGAAAGGATAACATTTCATCTGGAATTTAGTCCAAATTATTTGGTGTCTTTTTCTGTTGCCCCTTTACCATACTTTCTTATATTTCGTCAGCTTATTAGCTAAGTAAGGGCAGATAGAAATATGCATTTGGGTAAAGCACTTCTGTTTTTCCTCCTGTTGAACTGTGTGACCATGACTTTGTCACTATCCACTTGCACCACTGTGGACATAGACCACATAAAGAAGAAGAGAGTAGAGGCAATCCGAGGACAGATTCTCAGTAAACTTCGACTGACCAGCCCGCCACAAACATTGGGTCCGAATCAGGTACCGTTTCAGGTGCTATCGCTCTATAACAGTACGAAGGAGCTGATCGAGGAgttggggagagacagacagcaaagtTGTGGACAGGATAACACGGAGACTGAATATTACGCCAAAGAGATTTACAAGTTCAATATGATTAATGGACCACCAGAAAACAATGACCTTCCCTACTGCCCCAAGGGCATCACCTCCAAGGTATTCCGCTTCAACGTTTCCGCCATGGAGAAGAACTCCACCAACCTCTTCAGAGCAGAGTTCCGAGCCCTTCGTGTCCCCAACTCTAGTGCCAAGAGGAACGAGCAGCGGATTGAGCTCTACCAGATTCTGCGGCCAGACGACCACATAGCTAAGCAGCGCTACATCGGGGGCAAGAACGTCCTGACCAAAGGAACGCCAGAGTGGGTCTCCTTCGATGTAACAGACACAGTCAGGGAATGGCTTATGTACCGAGAGACCAACCTGGGCCTGGAGATCAGTGTGCACTGCCCCTGCCACACCTTCAACACCAACGGTGACATTATCGAAAACGTTAATGAGGTGCTACAAGTCAAGTTCAAAGGTGTGGAGGGTGACTATGATGAGAGCCGCTGGGACCTGGGCAGACTGAAGAAGCAGAAGGAGCAGCTCTTCCCTCATCTCATCCTCATGATGCTGCCCCCTCATAGGATAGATGCCCAGTCCTCATCCCGCAGACGCAAGAGAGCCCTGGACACCAACTACTGCTTCTCTAACTATGAGGAGAACTGCTGTGTACGACCCCTCTACATTGACTTCCGCCAGCACCTGGGCTGGAGGTGGATCCACGAGCCTAAGGGATACTACGCTAACTTCTGCTCCGGGCCCTGCCCTTACTTACGGAGCGCAGACACTACACACAGCTCGATGCTGAGCCTGTACAACACCCTGAACCCTGAGGCGTCTGCCTCTCCCTGCTGTGTGCCTCAGGACCTGGAGCCCCTCACCATCCTCTACTATGTGGGCCGCACGCCCAAGGTGGAGCAGCTCTCCAACATGATCGTCAAGTCCTGCAAGTGTAGCTAAGGGCCCCGGGCCCAGCACACTGGGATCTGACAGGGCCACACACGGCACTACAccgagggaggggaaggggagggtggTATGCTGTCTGTCCCACCACCAAGAGTACACCTGTCCATCCTCAacactctcccccctccttaGTCGAGCCCACACAGAGGCCCTGCAGAGAGAGACGCAGCCCACCACTCTACCCACAATTCCCAGGCTGTGTGCCCAAATGACTTTCAAACATCACTCCAGACCCAGCAATCTCAACAGAACTTTATTGGCCttttacaatgtttttttcttctcaatgTCAAGTGTCTTCcattattttttttgtcaatattTTCGGCCTTCTGAACTGCCTTTAGCTTTGTGCCATATGACCACGGGCATTCAAAGCCAACCTCTGTCTGCTCAGAGGAAAAGAACTGACGTAAGCTGTTCTAGCCATGACCACTGCCTACTCAAGGACATACAGTAGTTGCAGTCAAAAAGAGAGACCCACTGAGACCCTGGATTTACAGTGCAAATTAATCAAAGTGGCTAAAGCAAAAGCTCTGTCAGACTTTTGTTTCCTAAAGAGAACCATCCTTTTTAATGGAGGGCTGACACAAAGCCTTGACGCACAGGACAAACAGACTGTCCAAGCTGGAAACTAGCGCAGCGTGCACCACATTTCCCTACACTGGTTAATCTAGGACAGATGCTGATGGACTCTAATAATCTTAGGAAAAATACAAAATGCTGGAAAACAACCTTTATTCAACAAAGTATCTTTATGGTTATGTTTACCTCTGTTATGCAACAGAATCatgttttctggatttttttcttaaaTGAAGCTGACTTTTCTGTTGTACAAGACAATGTATGTCACTAGGTGAACACTTCACTAGATCACAAACTGTAAAAGTTTATTGCTATTACTCTTAAAcacttttttaaattaaaaatggTCTTGGACAAAcagatgtatatattttttcaaaatcTTTAGATAATCATCATTTGTGGGTATCAGTAAAAATTATGCATTTTTTCCAAGCTCAACCGCTATCCATATTGAGATCCTAGTGATGAAGAGCCAGATTCAATCAGATCATCTTTAGCCAAAATCCGCATAGATGATGTTTTGAcgtgtcggaggtggaactaGGTTAAAGCGCTCAAATCCACAAcggctcctggcattataccgaaagtggacattgccattggctgcatggAGTCGCATTGAAATGATTCCCATGCAGCGTTGTTTACAAGTtcaaacactggaatgtgagatgtagtctacacctccattaggctgatagaaatcctcatttttgtttaatgattttcaatttgaACGTCACTATTTCTATATAGAATACACTTTCTCATTCTGAACTTCTAATGCGAGTGGGATGGGTTTGGCTTTGTGACAATCAccacaagagcagctgctcaccgatttgacagctcAATGCAGTTTCACTCCCGAGCCCGCCACAACATCAGCTATAATGGTGTCGGCTAGCGCCAGTTAACGCTGGATCTGATTGAACTAGGCCCTAGTTCACTTTGAGGTGCAGGAAACTGATTTGATTGACAacctttaaataaataaaaaa

Function

NR:

description
transforming growth factor beta-3

GO: NA

KEGG:

id description
K13377 TGFB3; transforming growth factor beta-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574394.2 True 3305 mRNA 0.46 7 42764877 42786064

Neighbor

gene id symbol gene type direction distance location
erg28 LOC106591002 coding downstream 93796 42669036 ~ 42671081 (-)
LOC110497915 LOC106591465 coding downstream 160113 42601758 ~ 42604764 (-)
LOC110497913 NA coding downstream 193420 42570828 ~ 42571457 (-)
eml5 LOC106591625 coding downstream 202908 42494458 ~ 42561969 (-)
npc2 npc2 coding downstream 272815 42489857 ~ 42492062 (-)
LOC110498358 LOC106590063 coding upstream 314161 43100225 ~ 43110498 (-)
LOC110497926 LOC106589845 coding upstream 339370 43125434 ~ 43135492 (-)
LOC110498359 LOC106599825 coding upstream 350136 43136200 ~ 43139430 (-)
LOC110497927 lrrc74a coding upstream 355458 43141522 ~ 43148464 (-)
LOC110497929 LOC106589786 coding upstream 376434 43162498 ~ 43171448 (-)
G1626326 ttll5 non-coding downstream 52795 42710367 ~ 42712082 (-)
G1626321 NA non-coding downstream 67922 42696693 ~ 42696955 (-)
G1626320 NA non-coding downstream 68833 42695797 ~ 42696044 (-)
G1626316 NA non-coding downstream 73267 42691382 ~ 42691610 (-)
G1626312 NA non-coding downstream 77192 42687419 ~ 42687685 (-)
G1626431 NA non-coding upstream 69763 42855827 ~ 42856073 (-)
G1626435 NA non-coding upstream 73350 42859414 ~ 42859886 (-)
G1626448 NA non-coding upstream 82113 42868177 ~ 42868408 (-)
G1626477 NA non-coding upstream 103646 42889710 ~ 42889950 (-)
G1626486 NA non-coding upstream 112090 42898154 ~ 42898366 (-)
G1626232 LOC106611303 other downstream 123604 42640449 ~ 42641273 (-)
LOC110498355 atg2b other downstream 294175 42465705 ~ 42480874 (-)
G1626105 NA other downstream 509080 42255235 ~ 42255797 (-)
G1625428 arf6 other downstream 914444 41846255 ~ 41850433 (-)
G1625066 NA other downstream 1570118 41194433 ~ 41194759 (-)
G1627068 NA other upstream 622663 43408727 ~ 43409109 (-)
LOC110498001 NA other upstream 3217701 46003765 ~ 46008718 (-)
G1631005 NA other upstream 3833143 46619207 ~ 46629506 (-)
G1631120 LOC106612182 other upstream 4044270 46830334 ~ 46830650 (-)
G1632192 LOC106575636 other upstream 5130231 47916295 ~ 47980466 (-)

Expression


Co-expression Network