LOC110498358 (LOC106590063)


Basic Information

Item Value
gene id LOC110498358
gene name LOC106590063
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 43100225 ~ 43110498 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953847.1
CGGCGTATAACCCGACCCGACTCTACTCAACGTAACAGAGCAGTCTGAGGTCCAGTCATCTCATACTGACTCACTCCAAGGTGTCCTGACACAGCTAGTAAAAAGGTTGCACAGTGAGCATGAACCTGAGCCTCCCTGACCAGAACATGCACAACCCCAGTGACAGTGGTCTGGAGGATAACAAGGCTGGGCTCATGATCCCCTGCTTCCGTAGAAACATGTACGATGAGCCTCTAATTTCATACTCCAATGGATCCATCATCTCTCACCTCCTGCGCAAAACCATACACAACAAGAAGGCTCTGGACGAAAGCCATTTCTACCTACCCACATCGACTGTGTCCAGCTCCACAATGGCTGACTCCAGTCAGGAGGACCAGAGCAGTGTCTCATCCAAGGACAGCGCGGCAGAGTCTGCATCCCCAGGCAGGCACCTCTTGACCAGGGTCAGCCCTGAGGAGGACAGGCCCCTGAGTGATCACCTCCAGGCCAAGCGTGCCCGTGTGGAGAACATCATCCGCAGCATGGCGGGGTCTCCCAACAGCAGGCTCCATGGGGACAGTGAAAGGGCTGAGTCAGACACCAGGGAGGCTAGAGAGGCCTACAGGGAGAACAAACGTAAGCAGATGCTCCTCCAGCATCAGGAGCACAGTCTCTATGCGGCAGCTCCAGCTAACAgaggcagcagtagcagcagcagcagtaaggATGAAGAGTGCCACAAACTGAAGGTGCAGCTCCAGAGCATGCAGAGAATCCTGAGACAGCTCCAGGATAAGTTCTTACAGGTTtataaccaggacgacgctgtgCACGAAGACAGAGATGACACAGGCACAGCCAGCCCTCCTGAAAATGATGACACCACACCAAGCAAAGAGTCTGGGTTCATGTTCCGTATAAACATGGATGAGGAGTTAGAGAGGAAGCATGACAGTGGTAAAGGGGGCTGTAAGGacagagtgaagacagacagaagTTATCTGACACATCAAAGGGGAGGCAAGAACCTACAGGAGACTCTGAAGCATGAGCTCTCCAAAGCGATGAGTGAGAGTGTAGATAGGGTGTTCAAGAAACTCTCCTCCACAGGGCTCAACCAGTCATCTCATCAGCGCATGTGTCACACCCCGGAGCACGTCATTATGGGAGCTGAGAGGAAGAGCCAGGCACCCTGTAACCAGGAGCAATCACACACTGAGGAGCCAGTCAAACCCCAGGCTCTAGAGCACTATGAGAGAAGTGAGGCTTGCAGTCCTAAGGATCAGACCGAAGCTCTGTCTCTAGTGGTCCGTAAGCCGCCCCTGAGCCAGCTTAGCTCAGTTACCCCGACGGTGAAGAGGCCCTATCCCTTACACCAGTCTCCATTCCAGTTCAACTACAGCACACCTCTCCATGACAGTCAAATGCTGGAACACCTCCTCAAATACGGGCCCCACACTAACTTTGGAGGTCTCCCATGCATGCCCCCATCCATGGACAGAACGTCACCAAACTCGGTGGACCTACCCTGGTCCATGAGGTCCAAAGTGACATCCAGCCACCTGGCCCACCACCATCACCCATCAGGCCTGGGTCCAGTGACCGTGGACAGTCTGTGTCTCCCTCATGTCAAGATGGAGTGTGGGGACCTGCAGAGCATAGCAGAGAGAAACTCCTACATGTCTCTCAacatccagcaaGGCCTAACCCCCAACCATCTGAAGAAAGCTAAGCTGATGTTCTTCTACACCCGTTACCCCAGCTCCAATGTGCTGAAAACCTTCTTTCCAGATGTCAAGTTCAATCGCTGCATCACCTCTCAGCTCATCAAGTGGTTCAGTAACTTCCGGGAGTTTTACTACATCCAGATGGAGAAGTTTGCCCGCCAGGCCATAGTGGACGGGGTCAGGGATGTGAAAGACATGTCCATCAGCAGAGACTCTGAGCTGTTCAGAGCCCTCAACATGCACTACAACAAAGCCAATGACTTCCAGGTTCCTGAGAGATTCCTTGAGGTTTCTGAAATTACTCTTCAGGAGTTTTTCAACGCCATTTCAACTGCTAAAGATTCTGACCCCTCTTGGAAGAAGGCAATCTACAAGGTCATCTGTAAGCTGGACAGTGATGTCCCAGATGAGTTCAAATCATCCACCTGCCTATAGACAGAGCAAGCAAAAGCCATGCTCAAGGAAGGAAGGACATTTTGAATTAATTGGATTTTAGTGAGGAAATTCTGGAAAAAAACATGATGTTGTGAATGACGTATTATACACTGCAGGAACCTACTTATGGCACACATTTTTTACCGTCTCAGTAAACACATTATAATACTGCTTCAGCTCTCTCCTATGAGTTTTTGGTAACACACACTTGACACcaaggtcataaccatgtcataatatctCACAACAGCTgattatgacacctacataagagggTCACAACCCACATGTATTCAAAATCTTTTtttttccctgccaagaagtttccttttTTTCGAAAGTTTGTTTCTTCAATATTCTGTTGTTGTTATGAATTCTTTAGTCATGTTTATTTCTccatcatattttaaataacttgtggaaaatacactttatgacactgtcatgaagcattatgaccatcataatcatataagccaaaaaggcctatcacgtacatgcccaGTCATCAtcaacagagcattggggtaggtgcatgtctgacatcaatgtttGCGCAATTACAATGCTAATTCAATAtgttcaattaaaaaatatatatatatatatatataacataaacatactgttgacacgtAGGCTATGGTGttatggaatgttttgccttgtgtggtaggtttttgccttgtgtggtaggtttttg

Function

NR:

description
prospero homeobox protein 1-like

GO: NA

KEGG:

id description
K20211 PROX1; prospero homeobox 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953847.1 True 2847 mRNA 0.48 5 43100225 43110498

Neighbor

gene id symbol gene type direction distance location
tgfb3 LOC106590795 coding downstream 314161 42764877 ~ 42786064 (-)
erg28 LOC106591002 coding downstream 429144 42669036 ~ 42671081 (-)
LOC110497915 LOC106591465 coding downstream 495461 42601758 ~ 42604764 (-)
LOC110497913 NA coding downstream 528768 42570828 ~ 42571457 (-)
eml5 LOC106591625 coding downstream 538256 42494458 ~ 42561969 (-)
LOC110497926 LOC106589845 coding upstream 14936 43125434 ~ 43135492 (-)
LOC110498359 LOC106599825 coding upstream 25702 43136200 ~ 43139430 (-)
LOC110497927 lrrc74a coding upstream 31024 43141522 ~ 43148464 (-)
LOC110497929 LOC106589786 coding upstream 52000 43162498 ~ 43171448 (-)
LOC110497930 LOC106589732 coding upstream 61245 43171743 ~ 43174855 (-)
G1626654 NA non-coding downstream 58497 43040149 ~ 43041728 (-)
G1626655 NA non-coding downstream 60372 43039183 ~ 43039853 (-)
G1626651 LOC107092401 non-coding downstream 66507 43033112 ~ 43033718 (-)
G1626645 NA non-coding downstream 74677 43025274 ~ 43025548 (-)
G1626643 NA non-coding downstream 76758 43023236 ~ 43023467 (-)
G1626961 NA non-coding upstream 76527 43187025 ~ 43212755 (-)
G1626959 NA non-coding upstream 95373 43205871 ~ 43206971 (-)
G1626960 LOC106589621 non-coding upstream 97205 43207703 ~ 43208758 (-)
G1626958 NA non-coding upstream 98718 43209216 ~ 43210618 (-)
G1627022 NA non-coding upstream 196182 43306680 ~ 43320208 (-)
G1626324 NA other downstream 261791 42759294 ~ 42838434 (-)
G1626232 LOC106611303 other downstream 458952 42640449 ~ 42641273 (-)
LOC110498355 atg2b other downstream 629523 42465705 ~ 42480874 (-)
G1626105 NA other downstream 844428 42255235 ~ 42255797 (-)
G1625428 arf6 other downstream 1249792 41846255 ~ 41850433 (-)
G1627068 NA other upstream 298229 43408727 ~ 43409109 (-)
LOC110498001 NA other upstream 2893267 46003765 ~ 46008718 (-)
G1631005 NA other upstream 3508709 46619207 ~ 46629506 (-)
G1631120 LOC106612182 other upstream 3719836 46830334 ~ 46830650 (-)
G1632192 LOC106575636 other upstream 4805797 47916295 ~ 47980466 (-)

Expression


Co-expression Network