LOC110497927 (lrrc74a)


Basic Information

Item Value
gene id LOC110497927
gene name lrrc74a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 43141522 ~ 43148464 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574403.2
TCCAATGTTGTCAACTGTATTCCAGAGTTCCGCTATTGGCTCCTTGATTTGTCGGTATATTACGTTTTTGCCGTTGCCGCGACGACGTCACAGCATCATTTTGCCTTGTTGCGGCACACATGCAGTCAGTCCCCTTTCCTAGCGTTTTGCCTCCTCTCCCGCCGAACATTCCTCCCcttttgtgcctgtgtgtggatTGTTGCTGTCACTTCTGTTTGCGGCAGAATAGAGTGGAAAAAGTCGCTAAATGATATCAAAATCATATAAACGCCAAAGACAGTCTGAAAAGTAGATGATTTTGTCGCTAGAATCATTTACCAATAAAAAGTCGATACCAATAGCGACAACGTCGCTAAATTATCTGGTCTGCTAGCTATGATTGTCTTTAAATTCCTTCAATAATCATACCTCAATGCAATGTCCTTGCTAAATGGAATCATTGCGACGTCCCAAATTGACATTTTTGAAATGGTTAGGTAAGGGTATGGTTTAGGATAAAAACATCCCAaggattccaggtagaactaacCGTGACTGCTGCAACCACCTCAGTGCCCGATTTGAACATTTTACTGTAGATTTAAAGATGACAGTGACAACAAATAAAATGAGTTCAACAACAAGAAAGCTGCTCATGTAGGAATATTTGTAGAAGATTGTCATGGTCTGGAACTAGGAATGCAGCATTTTGTTTGTGCGTTGTAGGTAAACACTCAATAGGCCTTCTCTTAGCCTTTCCCTGTGAGTGGTGAATTCTTTATGACACACCATGGTCACTTTAGGATTGAATTACAGTTTGGGACAACTCATGTGGGTATTTGATTTCACTGTTGCAACAACAGTTGCTCAGCCCTCACAGATACCAGTGCATAATGTGGGAAGAGCCAAAGTCATAACGGGAAGTAAAATACAAATTCAACAAACATGTTTTAGACCGGGAGTATGTGACTGTTAGGACAGAGAAGATGTCTGTCCTATCTCTCAAGTCCCTCTGCCTAGCAGATAATGACAGTCCATCCTCTGCAGAAGACCTAGACCTGGAGGATAAGTGGGATACAGACCTGGAGGTTGATGAGGTGAAAAAGACCAGAAAAGACACATCGACTGCTGAGATATACCTGCAGGCCTGCAAGCTGGTCGGGGTGGTTCCTGTCTCCTACTTCCTCCGGAACCTGGGCACCTCCACCATGAACCTCAACCACCATGGCCTGGGACCTCCAGGGGGCAAGGCACTAGCCATCGCCCTGGTGACTGACATGCACATCACCAATCTGGAGTTGGCAGACAACTACCTGCTGGCTGAGGGAGCCAGATACCTTCTAGAGATGTTAAAGGCAAATTTCACCATTCAGCATCTGGATTTGTCCAACAATCACCTACAGTCTGAAGGGGCTGAGTGCATTACAAAAATGTTGCTCGATAACATTTCCATCAAATCCATCAAACTTTCAGGGAATGGATTCATAGAGGACGATGCTAAAAGTTTTGCAGATGCCCTGGCAAGCAACTACAGAGTGAAGGAGCTGGACTTGAGCCACAATCAGTTctgtgggagaggtggggagcATCTGGGCCAGATGTTAGCAAACAATGAAGCTCTGGAGGTACTAGACTTGAGCTGGAACCATCTGAGAATGAAAGGAGCTGTGGCTTTCTGTGCCGGCCTCAAGGTGAATGTGACCCTGAAACACCTGGACCTGTCCTGGAATGGCTTTGGGAATGAGGGGGCCTTGGCTTTAGGAGAGGCTCTGAAATTCAACAACACTCTGGTGTACCTGGACCTCAACAACAACCGCATCACCAACGAGGGGGTGGGCATGCTGTGCAAGGGGCTGGAGGCCAACGACACTCTCAGAGCACTGATGCTGGCTTATAACTCTCTGACAGTGGAGGGGGCGCTGGCTcttgttactgtggtcaagaacACCCCCAaaactgctctagaggagatcaaCATATCCaatGTGTTGGTGAATGAGAACTTTGTGCAGCTGCTGGATCTGACATGCCAGGAGCATCCCTCTCTAGAGGTGCAGTATGCAGGGGTCGGGGGCTTTATTGCTAAGAAACCACCCAAACGCCTTGACCCAATGAAAGTAATCCAGGATTATCTGGATGAACGGAAGCTGCGTCTTTGGGACTTCTTTCGGAAAATCGATAAAGATGGGACAATGCGAGTGCCTGTGGCAGACTTCAGGAAGGCTGTGCAGCAATCCAACATCCCCTTGGATCGATACCAGATTGAGGAGTTGATTCAGAGACTGGATCGTGAAAGGACAGGGATGGTAGACTACAGGGGCCTGGCCGACACCAGGAAGCAGATGATGCGGGACCACCGGCGGCAGCTGCGTAAGGTGGAGTCCCGTCAGAAGAAAGAGAAGCAGAAGAGCGAGCGCATCCTGAAGACCTTCCAGAGCGCCGTGGAGGCCAACACCCCCCGCAGCTCCATGGTTATGTCCCCAGGGGGCACCAAGGAGGACTCCAGTGGCCCCCAGCACTTCTCTGCCACCCCACTCAGCTCCTGGCACCACATTGTCATGTCCAACAGCAGCCGCTACTCTGTCACAAACCTGAGCAGTGAGCACATCCACCTCCCCATGCTAGGGGGCAGCACCCACCAACGGCCCACCAGTTCCCCCACCATGCGCTCCTACTCCCAGCCCAACCTGATAGATGACTCCCAACGATACCCCCAATCCAAACCCTCCTCGGCCCAGGGGATGCTCTCTGACTCCAACCCTGATGTTGACCACACCAAGCTGAGCCCCAATGCCAACCACCTGACCAGGTCCAGTCCAGCACTGAACTCCAAGCAGCCAGACACTAAAACCAAAACCACCAaagtgaagaaaaaaaagaaacgcgTGGATAAAACTCCACATGAACAGAATCAAACACAATCATCAAAGTGACTGCTGCTGCTGTGTCTTACTATGCAGTAACCGCTCCACTGACCCAtcgttatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctc

Function

symbol description
lrrc74a Predicted to enable calcium ion binding activity.

NR:

description
leucine-rich repeat-containing protein 74A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574403.2 True 3014 mRNA 0.49 13 43141522 43148464

Neighbor

gene id symbol gene type direction distance location
LOC110498359 LOC106599825 coding downstream 2092 43136200 ~ 43139430 (-)
LOC110497926 LOC106589845 coding downstream 6030 43125434 ~ 43135492 (-)
LOC110498358 LOC106590063 coding downstream 31024 43100225 ~ 43110498 (-)
tgfb3 LOC106590795 coding downstream 355458 42764877 ~ 42786064 (-)
erg28 LOC106591002 coding downstream 470441 42669036 ~ 42671081 (-)
LOC110497929 LOC106589786 coding upstream 14034 43162498 ~ 43171448 (-)
LOC110497930 LOC106589732 coding upstream 23279 43171743 ~ 43174855 (-)
LOC110497934 LOC106589256 coding upstream 363504 43511968 ~ 43526477 (-)
LOC110497935 LOC106589171 coding upstream 408759 43557223 ~ 43582363 (-)
LOC110497940 LOC106588600 coding upstream 591508 43739972 ~ 43805811 (-)
G1626654 NA non-coding downstream 99794 43040149 ~ 43041728 (-)
G1626655 NA non-coding downstream 101669 43039183 ~ 43039853 (-)
G1626651 LOC107092401 non-coding downstream 107804 43033112 ~ 43033718 (-)
G1626645 NA non-coding downstream 115974 43025274 ~ 43025548 (-)
G1626643 NA non-coding downstream 118055 43023236 ~ 43023467 (-)
G1626961 NA non-coding upstream 38561 43187025 ~ 43212755 (-)
G1626959 NA non-coding upstream 57407 43205871 ~ 43206971 (-)
G1626960 LOC106589621 non-coding upstream 59239 43207703 ~ 43208758 (-)
G1626958 NA non-coding upstream 60752 43209216 ~ 43210618 (-)
G1627022 NA non-coding upstream 158216 43306680 ~ 43320208 (-)
G1626324 NA other downstream 303088 42759294 ~ 42838434 (-)
G1626232 LOC106611303 other downstream 500249 42640449 ~ 42641273 (-)
LOC110498355 atg2b other downstream 670820 42465705 ~ 42480874 (-)
G1626105 NA other downstream 885725 42255235 ~ 42255797 (-)
G1625428 arf6 other downstream 1291089 41846255 ~ 41850433 (-)
G1627068 NA other upstream 260263 43408727 ~ 43409109 (-)
LOC110498001 NA other upstream 2855301 46003765 ~ 46008718 (-)
G1631005 NA other upstream 3470743 46619207 ~ 46629506 (-)
G1631120 LOC106612182 other upstream 3681870 46830334 ~ 46830650 (-)
G1632192 LOC106575636 other upstream 4767831 47916295 ~ 47980466 (-)

Expression


Co-expression Network