LOC110497929 (LOC106589786)


Basic Information

Item Value
gene id LOC110497929
gene name LOC106589786
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 43162498 ~ 43171448 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574404.2
GAAGCTCGTTGAACCCGTCTACGCATGCCCAGCTGCTATAGATCTGGGAGTGTCTGAGCGGCGCAATATTGTAGCAGGCATGAGATTAGCTCTCGCTACTCTGTAGCCATGGGCGTTCAAACTGGATTGATTTGGACTGAAACGAACAATATTGTGTCGTAAAATGGACTAGACTGGAATGCGGGCAGTAACTAAACGGAGTGTCGAAGAAATGTGATCGTATCCAATCTATCCCGGCGTTGTGGATATAGACCGAATGACCTCTGGGATAACGGTGCCGGCGGGTATTGGGGTTTTTTAATACAAACTactgtttgttgtctgtatacCCTTTTGGAAGATGCTATTTTTCCCCCTTATGTTGTAGGCATTATGTGTATTCATAATTTCCCAATGTGCTTAGTTCAACTTCATTGTTGAAGTCTTATTTTCATGATGCCTAAAAATTCACGCATTTTCTAGTTTTAATAATATATTGTCTAGTTTCAGTATTTCAATGATTTACTTGACTTAACCTGCATTGTGATGTTTCTAAAGTGCCAATAACATTATCGTTCAGACATGACTTGATGTAGGCTAACTATAATTCCCTTTAATCCCtgcttttgcaaaaaaaaaatatatatataattgaacTCATCTGACATAAGTGGACAATTGTAACAACTACTGTAGCTTTAACTCCGCATTTGGGTGGAACATATGATTGTGTGCCATTTTGTTCATAAGAGGTACAGTATTTTAATTTGGAGACTGATACAGCCTGCAGTTTTGCAAAGTTCTACATATCCAGCGTGTCATGAATTGCTCATGTTTCTCAGCTGCTGTGGGAGTGTTACTTGCTGAGAAACTGCAATCAGATTGACAGTTAAAGGGCAGGGCACATAGGCTGTAAACCATCTGTGCCAGGTTCCAGGACTGGGGTCCCTTGTGTGGGGGGATGCTAAGGACCACAGTGGGGTGtgtgggggtggaggagagagatgaggatgaaGGTGAAGAGGATTTGCGGGACGGAGGGGTGCCCTTCTTCGTAAACAGGGGAGGCCTACCGGTGGATGAGGAGACTTGGGAGCAGATGTGGAGGCATGTGGCTCGGATTCACCCTAATGGGGAGGCCATAGGGACACGCATCCGGGGAGCCAGTGATCTGCCCAAGATTCCTACACCGAGTGTGCCTACATACCAGCCAACCACCAGTATCCCACAGCGCCTGGAAGCCATACAGAAATACATCAGGGACTTGCAGTACAATCACACGGGAACACAGTTTTTTGAAATCAAGAAGAGCAGGCCTCTTACTGCGTTGATGGACATCGCCAAGGAGATGACCCGGGAGTCACTGCCAATCAAGTGTCTGGAGGCTGTGATCCTTGGGATTTACCTTACCAACAGCATGTCGGGTGTGGAGCGCTTCCCCCTCAGCTTTAAAACGCAGTTCTCAGGGAACCACTTCTGCCACATCGTGCTGGGGGTGCACAGCGGGGGCCGCTTCGGGGCACTGGGCATCAGTCGGCGGATGGACCTCATGTTCAAACCCCTGGAGTTCCGAACACTGGCTGACCTGGTGCAGGAGTTTGAGGGGGCCTACATGGGTTACTGGCATACCCTGAGGAAGGTGAAGATTGGCCAGTATGTGTCCCATGACCCCCACAGTGTGGAGCAGATAGACTGGAAACACTCCATACTAGATGTGGATAAGCTGACCAAGGAGGAAAtgaggagagagctggagagacacACTCGGGACATGAGGATGAAGATTGGGAAGGCTGCGCCCACTTCACCCACCAAAGACAGGAAGTGTAACATGGGCTCGCCCCACCGTAACCCGGGCAGCCCCATGCGCAGGAACAGCCGCATCGAGAGACGTCCATCAGGAGAGAAGAAAGTTCTTGATCCGAAGTCCCCTCCAGACATGAATGGATATCAGATTCGAGTGTGAGGAAGATTTCACTTCATAAAATCATCCTGCAAAACAAGACCGTAGAATGGTAGGGTTCTGTCCAACTAAAGGTTAGTTCCGGGGAATGGGCTTTTGTGTTCAGATTCGAAATAGGTTTGTACTGTGTAAGCAATTTATTTAGGGTATTTTGCATTCAACAAACGTGAGGTATACTGTACAGAGAATGGCCATGTCAATAACAGATTTTTGACTAGATGTAAGTTCAAAGCCTATAATTCTAAGTTCTCACAATGCTCAACTTTGGGGATATCAAACAGTTGTTTTACACAgccaaatccatttaaattatcTTGTCTAACTGGTTGGCCTATTCACAAGAATTTCTCTCCAAAAATGTGGCATGGGCCATTCATCAGCCCTGTGGTTATTTGTTGTTACCAGGCTTTTTGTAAAGCCAGAAGCTTGGTAGTGTAGTCCATTCTacaatataattggttcagacaGCATTTAAGGGTCAAACAGGCATTGATCATGTTTTTAAAGATGTTCTGTAGGGTTTTGTTAATATGCAATATTACATTTAGCTTATTTCTTAACATGTAAAGTGCTGCAATTGGAAATATCATAGCAGATATCCATGTTGTCAATCAGTTATTAAGAATGACAATTATTGTGAGGATTATGTGCAATCTGTGTCTCCATGTTGTACTGTAAGTGTGTAAATACATTGAACCTTTAACTGTTAGCCCTGCTGGACAGTAACTGCTTTTGTAGTGACTAGTTTGCAATCCACTTACCTTGTGCCTTTTAGGAACATTTTAATAGACAGTGATAAAGAAAACAAGTATTACTGGGTGAATCGTTTTTTCAATTTCACTAGGAAAATACACTGTACAATCCATCTACTCGATCCCAAATAGATGGTAAATTGAGCTATCAACACCTtaccctgtgtttgtgtgttctgcTATGGAGATGATGCGTGTGATTGAATATTGGGTCATTCAGTGTACAGTAGTCTATTTAAACCTTTCAAAGCATGAAAAGTGTGATATGTTTTAGGATAGTAAGAGAAAGTAGTCAGTGTGGTCAACAGAATTTTTAAATTCTGGGGTCACTCAAGACAAAATCTCACACTCTCATAAAATGACTGCAACTAAGTGCGAAGGATGAAGTTGCAGCTGATATGGTTTGACATTATTtggggggaaagagagatatTTTGAAGGCAGCAGTTACTTTTTTATATTGACATGGTCTGATATTTTTGCCTTCGTACAGTATAAATAACATTATTCTTATTATCTTAACACATAGCCTTATTGTGGTTGTCTAGCTCTATTTAATATTTACCATTTTTATTAAAGGTGCAAAGAGATTTGTTTACAATATTCTCATCTTCATTTTTAAATGACATTTAGGCCAGAGCACTTGAGAAATTGGAGTCtgcaccatttaaaaaaaaaatagtgccTCGGAGCACATTGATTGGTTGGGATTCCTTGAGCCTCTTTCATTTTAAcatagaggttgttgtcttgTACCAAAATATTATATGACCATTTATCACTATGTAGGACTTCCTATTGATTTAGAAATaaactctcctcacctctctcccaatTAATCTGTTGTGTTGATTTAGCTGACTTATGTCATGGGTCAGATGCCTGTGAGTTTATTGGAGCTTCAGCTACATTAAGAGATCTACAAAATACAACAATGGATCAAATGTAGAGCTAAAATCAATGAATACAGTTATCAAACAGTGTGCTGAGGACATGGAGGGCACACTGCCAGTCTACATACCAACCAAGAGTCCAAATTGGGCAGTGTGCACTCATCTGAAATACCTCTGCCACACACAGACGGACAATTCAAAGAATAAACGACGAGCAATAAACATTTCCTCCTTTGATTGTCCACAAAGAAACCTTAATACAAATCCCATACTGAGGATCTGTGCACTAGGGGACTATACATTTATAAGACCATAAACAAAGACCTCTGCTTGCAGCCACACTAATTAGAATAACATTTTCTGTATCTTCTCTGTTGCATGCTGGTACACTGTGAGAACTCCTAGCCCATTTTGGGCTTCAAGACATCCTTAACTGTAAATCACAGGAGTTTTTTTATATCCTTTTTCTCTCTGCAATTGTGTTTTTGTTCCTTAGTGCAAAGATGTGATGATGTCACTGAGATTTTATCTAAGGTGGAATAACAAGAAATATTGTAACCAGAAATCACCTGTACGGCTTTGTGACACTTGAAACTGAAATAAACAAGCAACTGGTATTTGACTAGATTTGTTGAAAA
>XM_021574405.2
TGAAGCTCGTTGAACCCGTCTACGCATGCCCAGCTGCTATAGATCTGGGAGTGTCTGAGCGGCGCAATATTGTAGCAGGCATGAGATTAGCTCTCGCTACTCTGTAGCCATGGGCGTTCAAACTGGATTGATTTGGACTGAAACGAACAATATTGTGTCGTAAAATGGACTAGACTGGAATGCGGGCAGTAACTAAACGGAGTGTCGAAGAAATGTGATCGTATCCAATCTATCCCGGCGTTGTGGATATAGACCGAATGACCTCTGGGATAACGGTGCCGGCGGGTTCCAGGACTGGGGTCCCTTGTGTGGGGGGATGCTAAGGACCACAGTGGGGTGtgtgggggtggaggagagagatgaggatgaaGGTGAAGAGGATTTGCGGGACGGAGGGGTGCCCTTCTTCGTAAACAGGGGAGGCCTACCGGTGGATGAGGAGACTTGGGAGCAGATGTGGAGGCATGTGGCTCGGATTCACCCTAATGGGGAGGCCATAGGGACACGCATCCGGGGAGCCAGTGATCTGCCCAAGATTCCTACACCGAGTGTGCCTACATACCAGCCAACCACCAGTATCCCACAGCGCCTGGAAGCCATACAGAAATACATCAGGGACTTGCAGTACAATCACACGGGAACACAGTTTTTTGAAATCAAGAAGAGCAGGCCTCTTACTGCGTTGATGGACATCGCCAAGGAGATGACCCGGGAGTCACTGCCAATCAAGTGTCTGGAGGCTGTGATCCTTGGGATTTACCTTACCAACAGCATGTCGGGTGTGGAGCGCTTCCCCCTCAGCTTTAAAACGCAGTTCTCAGGGAACCACTTCTGCCACATCGTGCTGGGGGTGCACAGCGGGGGCCGCTTCGGGGCACTGGGCATCAGTCGGCGGATGGACCTCATGTTCAAACCCCTGGAGTTCCGAACACTGGCTGACCTGGTGCAGGAGTTTGAGGGGGCCTACATGGGTTACTGGCATACCCTGAGGAAGGTGAAGATTGGCCAGTATGTGTCCCATGACCCCCACAGTGTGGAGCAGATAGACTGGAAACACTCCATACTAGATGTGGATAAGCTGACCAAGGAGGAAAtgaggagagagctggagagacacACTCGGGACATGAGGATGAAGATTGGGAAGGCTGCGCCCACTTCACCCACCAAAGACAGGAAGTGTAACATGGGCTCGCCCCACCGTAACCCGGGCAGCCCCATGCGCAGGAACAGCCGCATCGAGAGACGTCCATCAGGAGAGAAGAAAGTTCTTGATCCGAAGTCCCCTCCAGACATGAATGGATATCAGATTCGAGTGTGAGGAAGATTTCACTTCATAAAATCATCCTGCAAAACAAGACCGTAGAATGGTAGGGTTCTGTCCAACTAAAGGTTAGTTCCGGGGAATGGGCTTTTGTGTTCAGATTCGAAATAGGTTTGTACTGTGTAAGCAATTTATTTAGGGTATTTTGCATTCAACAAACGTGAGGTATACTGTACAGAGAATGGCCATGTCAATAACAGATTTTTGACTAGATGTAAGTTCAAAGCCTATAATTCTAAGTTCTCACAATGCTCAACTTTGGGGATATCAAACAGTTGTTTTACACAgccaaatccatttaaattatcTTGTCTAACTGGTTGGCCTATTCACAAGAATTTCTCTCCAAAAATGTGGCATGGGCCATTCATCAGCCCTGTGGTTATTTGTTGTTACCAGGCTTTTTGTAAAGCCAGAAGCTTGGTAGTGTAGTCCATTCTacaatataattggttcagacaGCATTTAAGGGTCAAACAGGCATTGATCATGTTTTTAAAGATGTTCTGTAGGGTTTTGTTAATATGCAATATTACATTTAGCTTATTTCTTAACATGTAAAGTGCTGCAATTGGAAATATCATAGCAGATATCCATGTTGTCAATCAGTTATTAAGAATGACAATTATTGTGAGGATTATGTGCAATCTGTGTCTCCATGTTGTACTGTAAGTGTGTAAATACATTGAACCTTTAACTGTTAGCCCTGCTGGACAGTAACTGCTTTTGTAGTGACTAGTTTGCAATCCACTTACCTTGTGCCTTTTAGGAACATTTTAATAGACAGTGATAAAGAAAACAAGTATTACTGGGTGAATCGTTTTTTCAATTTCACTAGGAAAATACACTGTACAATCCATCTACTCGATCCCAAATAGATGGTAAATTGAGCTATCAACACCTtaccctgtgtttgtgtgttctgcTATGGAGATGATGCGTGTGATTGAATATTGGGTCATTCAGTGTACAGTAGTCTATTTAAACCTTTCAAAGCATGAAAAGTGTGATATGTTTTAGGATAGTAAGAGAAAGTAGTCAGTGTGGTCAACAGAATTTTTAAATTCTGGGGTCACTCAAGACAAAATCTCACACTCTCATAAAATGACTGCAACTAAGTGCGAAGGATGAAGTTGCAGCTGATATGGTTTGACATTATTtggggggaaagagagatatTTTGAAGGCAGCAGTTACTTTTTTATATTGACATGGTCTGATATTTTTGCCTTCGTACAGTATAAATAACATTATTCTTATTATCTTAACACATAGCCTTATTGTGGTTGTCTAGCTCTATTTAATATTTACCATTTTTATTAAAGGTGCAAAGAGATTTGTTTACAATATTCTCATCTTCATTTTTAAATGACATTTAGGCCAGAGCACTTGAGAAATTGGAGTCtgcaccatttaaaaaaaaaatagtgccTCGGAGCACATTGATTGGTTGGGATTCCTTGAGCCTCTTTCATTTTAAcatagaggttgttgtcttgTACCAAAATATTATATGACCATTTATCACTATGTAGGACTTCCTATTGATTTAGAAATaaactctcctcacctctctcccaatTAATCTGTTGTGTTGATTTAGCTGACTTATGTCATGGGTCAGATGCCTGTGAGTTTATTGGAGCTTCAGCTACATTAAGAGATCTACAAAATACAACAATGGATCAAATGTAGAGCTAAAATCAATGAATACAGTTATCAAACAGTGTGCTGAGGACATGGAGGGCACACTGCCAGTCTACATACCAACCAAGAGTCCAAATTGGGCAGTGTGCACTCATCTGAAATACCTCTGCCACACACAGACGGACAATTCAAAGAATAAACGACGAGCAATAAACATTTCCTCCTTTGATTGTCCACAAAGAAACCTTAATACAAATCCCATACTGAGGATCTGTGCACTAGGGGACTATACATTTATAAGACCATAAACAAAGACCTCTGCTTGCAGCCACACTAATTAGAATAACATTTTCTGTATCTTCTCTGTTGCATGCTGGTACACTGTGAGAACTCCTAGCCCATTTTGGGCTTCAAGACATCCTTAACTGTAAATCACAGGAGTTTTTTTATATCCTTTTTCTCTCTGCAATTGTGTTTTTGTTCCTTAGTGCAAAGATGTGATGATGTCACTGAGATTTTATCTAAGGTGGAATAACAAGAAATATTGTAACCAGAAATCACCTGTACGGCTTTGTGACACTTGAAACTGAAATAAACAAGCAACTGGTATTTGACTAGATTTGTTGAAAA

Function

NR:

description
vasohibin-1-like

GO:

id name namespace
GO:0016525 negative regulation of angiogenesis biological_process
GO:0001937 negative regulation of endothelial cell proliferation biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K23355 VASH; tubulinyl-Tyr carboxypeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574404.2 False 4225 mRNA 0.42 7 43162498 43171447
XM_021574405.2 True 3601 mRNA 0.43 8 43162498 43171448

Neighbor

gene id symbol gene type direction distance location
LOC110497927 lrrc74a coding downstream 14034 43141522 ~ 43148464 (-)
LOC110498359 LOC106599825 coding downstream 23068 43136200 ~ 43139430 (-)
LOC110497926 LOC106589845 coding downstream 27006 43125434 ~ 43135492 (-)
LOC110498358 LOC106590063 coding downstream 52000 43100225 ~ 43110498 (-)
tgfb3 LOC106590795 coding downstream 376434 42764877 ~ 42786064 (-)
LOC110497930 LOC106589732 coding upstream 295 43171743 ~ 43174855 (-)
LOC110497934 LOC106589256 coding upstream 340520 43511968 ~ 43526477 (-)
LOC110497935 LOC106589171 coding upstream 385775 43557223 ~ 43582363 (-)
LOC110497940 LOC106588600 coding upstream 568524 43739972 ~ 43805811 (-)
LOC110497941 LOC106588489 coding upstream 643263 43814711 ~ 43890059 (-)
G1626654 NA non-coding downstream 120770 43040149 ~ 43041728 (-)
G1626655 NA non-coding downstream 122645 43039183 ~ 43039853 (-)
G1626651 LOC107092401 non-coding downstream 128780 43033112 ~ 43033718 (-)
G1626645 NA non-coding downstream 136950 43025274 ~ 43025548 (-)
G1626643 NA non-coding downstream 139031 43023236 ~ 43023467 (-)
G1626961 NA non-coding upstream 15577 43187025 ~ 43212755 (-)
G1626959 NA non-coding upstream 34423 43205871 ~ 43206971 (-)
G1626960 LOC106589621 non-coding upstream 36255 43207703 ~ 43208758 (-)
G1626958 NA non-coding upstream 37768 43209216 ~ 43210618 (-)
G1627022 NA non-coding upstream 135232 43306680 ~ 43320208 (-)
G1626324 NA other downstream 324064 42759294 ~ 42838434 (-)
G1626232 LOC106611303 other downstream 521225 42640449 ~ 42641273 (-)
LOC110498355 atg2b other downstream 691796 42465705 ~ 42480874 (-)
G1626105 NA other downstream 906701 42255235 ~ 42255797 (-)
G1625428 arf6 other downstream 1312065 41846255 ~ 41850433 (-)
G1627068 NA other upstream 237279 43408727 ~ 43409109 (-)
LOC110498001 NA other upstream 2832317 46003765 ~ 46008718 (-)
G1631005 NA other upstream 3447759 46619207 ~ 46629506 (-)
G1631120 LOC106612182 other upstream 3658886 46830334 ~ 46830650 (-)
G1632192 LOC106575636 other upstream 4744847 47916295 ~ 47980466 (-)

Expression


Co-expression Network