LOC110497930 (LOC106589732)


Basic Information

Item Value
gene id LOC110497930
gene name LOC106589732
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 43171743 ~ 43174855 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574406.2
ttgaatgtatttattatatttaacTAGCTAGCGGCAACCGGAAGCCGAGATGCGCAGGGAAACAAACGTCGATTGTTGATGACGTTTAGACACAGTCACACGAGGGCTGTAGGCAGTTATACAAGTCAGCTGTTGTATTTTTAAAAACAAAACATGGGGAAACGGAAGACAAAGAAGTTTGCATCAATGAAGAGAATGATAAGCTTGAAAGATCAGAGAATAAACGAGAAAGATCGTGCCAAAGTACAAGAGACAAAGAAAAAGGATCCATCGGAAATAAAGGAAAAAGAAGTTCCAAAATATCCATCGTGCCTGTTCTTCCAGTACAACACTCAGCTTGGTCCCCCTTATCACATCCTGGTCGACACCAATTTCATTAACTTCTCCATCAAGGCTAAACTGGACATAGTTCAGTCAATGATGGACTGCCTGTATGCCAAGTGTATCCCATGCATCACAGACTGTGTAATGGCTGAGATAGAGAAACTGGGGATGAAGTATAGAGTAGCTCTGAGGATAGCCAAGGATCCTCGGTTCGAACGACTGCCATGCACCCACAAAGGAACATACGCTGATGACTGCTTAGTTCAAAGGGTAACCCAGCATAAGTGCTACATCCTGGCAACTGTGGACAGGGACCTGAAGAGAAGGATCAGAAAGATCCCAGGAGTACCCATCATGTACATCTCCAACCATAGGTTCAACATTGAAAGAATGCCTGATGACTATGGTGCTCCAAGATTCTAATATTCAGTTGATGGAATTGAAATTCTAGTTGGACTGTGGCTTTTGTCGAGgaggttttgatttgtttacctgCTCATTGTATATTGTTAAAGGACTTAAGTTTATGCTCTACATTTTTAACAGAAATGGATGACAGAGTAATAATTTTGCAAATTTAATGACTGGTGTATTTCTTACTATTCCCAAAACTGTTTTTCACTTTGTTCCATAAAAGTACAAATGCATTCTGTCAAGGTGtgaaaattgaaataaattaatggAAGAATAGTC

Function

NR:

description
rRNA-processing protein FCF1 homolog

GO: NA

KEGG:

id description
K14566 UTP24, FCF1; U3 small nucleolar RNA-associated protein 24

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574406.2 True 1017 mRNA 0.40 8 43171743 43174855

Neighbor

gene id symbol gene type direction distance location
LOC110497929 LOC106589786 coding downstream 295 43162498 ~ 43171448 (-)
LOC110497927 lrrc74a coding downstream 23279 43141522 ~ 43148464 (-)
LOC110498359 LOC106599825 coding downstream 32313 43136200 ~ 43139430 (-)
LOC110497926 LOC106589845 coding downstream 36251 43125434 ~ 43135492 (-)
LOC110498358 LOC106590063 coding downstream 61245 43100225 ~ 43110498 (-)
LOC110497934 LOC106589256 coding upstream 337113 43511968 ~ 43526477 (-)
LOC110497935 LOC106589171 coding upstream 382368 43557223 ~ 43582363 (-)
LOC110497940 LOC106588600 coding upstream 565117 43739972 ~ 43805811 (-)
LOC110497941 LOC106588489 coding upstream 639856 43814711 ~ 43890059 (-)
gpx2 gpx2 coding upstream 731548 43906403 ~ 43907894 (-)
G1626654 NA non-coding downstream 130015 43040149 ~ 43041728 (-)
G1626655 NA non-coding downstream 131890 43039183 ~ 43039853 (-)
G1626651 LOC107092401 non-coding downstream 138025 43033112 ~ 43033718 (-)
G1626645 NA non-coding downstream 146195 43025274 ~ 43025548 (-)
G1626643 NA non-coding downstream 148276 43023236 ~ 43023467 (-)
G1626961 NA non-coding upstream 12170 43187025 ~ 43212755 (-)
G1626959 NA non-coding upstream 31016 43205871 ~ 43206971 (-)
G1626960 LOC106589621 non-coding upstream 32848 43207703 ~ 43208758 (-)
G1626958 NA non-coding upstream 34361 43209216 ~ 43210618 (-)
G1627022 NA non-coding upstream 131825 43306680 ~ 43320208 (-)
G1626324 NA other downstream 333309 42759294 ~ 42838434 (-)
G1626232 LOC106611303 other downstream 530470 42640449 ~ 42641273 (-)
LOC110498355 atg2b other downstream 701041 42465705 ~ 42480874 (-)
G1626105 NA other downstream 915946 42255235 ~ 42255797 (-)
G1625428 arf6 other downstream 1321310 41846255 ~ 41850433 (-)
G1627068 NA other upstream 233872 43408727 ~ 43409109 (-)
LOC110498001 NA other upstream 2828910 46003765 ~ 46008718 (-)
G1631005 NA other upstream 3444352 46619207 ~ 46629506 (-)
G1631120 LOC106612182 other upstream 3655479 46830334 ~ 46830650 (-)
G1632192 LOC106575636 other upstream 4741440 47916295 ~ 47980466 (-)

Expression


Co-expression Network