LOC110498360 (LOC106589621)


Basic Information

Item Value
gene id LOC110498360
gene name LOC106589621
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 43174778 ~ 43210365 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954881.1
CAACAATCGACGTTTGTTTCCCTGCGCATCTCGGCTTCCGGTTGCCGCTAGCTAgttaaatataataaatacattcaagTATTTTGGACCTGGCCCAGCCTATGTGGGGAGCAGAAGAGTCTGAGTCAGAGCTGAAGATGGTCTGATGGACCTCCGCTTTTTGCTGACTTTCCTCTTCTGCTCAGTCTCGTGGATCTTCTTCTGGGAGGTGCGCTGGAAGAAAGGCAAAGAAAGTCAGATTGAAGAATGGATTCAAGGCCACAGTCTCTCCGAATACAAACACTTACTTGAAGatgtggagaCTCTGGAGGAGCTGAGCCTGAGTATTCTGACTCGTCTGGAGTACGTGGTGAGAGAGAAGCGGCGCTGGAGGGACATCGCAGAGGCTCATATCCAGCTGCTGCGAGACTTTGCCTTCCAGGAGTGGCTCTGCTCTCAGAGCCTTGAGCACTACTATCATACACTGAAGACCTTGGGTTGTATGACTCTGGATGATCTAGCCCAGTTTGACAGCCAGTTGCAGCTCTCTCTTGCTGCGTGGGGATACTACTACGAAGACTACATCAAGCTGTCCACGGGCGTCAAGGTTCTCCAGGCCTCTAGGGGGAGCCGCGACCAGGACTACGAGATCCAACTCGTGCACAGCCTTGCTGAAAGGCGCCTGAATGAGAAGTGGTCTATCGCGGGAGCTTTTATATTTGGCTGTACTGTAGCACTGTGCTTTCTGATAAGGGACCTCATGTTTTACGTGATTGGTGGAATTACTGTTTCCATCATAGCGTTTGTCTTTACCATCAAGTTCCTATGTGAGCTTGCTGCGCGGGTGGTTAGCTTCCTGCAGAATGAGGATCCCGGGAGAAGGGGTGACCGCAGCATCTACGACTATGTACGAGGGAACTACCTGGACCCGCGCTCCTGCAAGGTGTCCTGGGATTGGAAGGACCCACAGGAAGTGGGCCAGACTATGAGCTTCCGTGTTCACCTCTTCTACAAGAACGGCCAGCCCTTCCCTGCCCACCGACCCGTGGGGTTAAGGGTCAACATCACTCACATAGAGCTGGCCCTAGACATCCCCATCACCCAGGAGGTTCTGCAGGAGCCAGAGTCCAATGTGGTCAAACTGGCCTTCACTGTCCGCAAGGCCGGACGCTATGAGGTAGCTGTCAAACTGGGAGGACTCAACGTGGCCTACAGCCCTTACTACAAGATATTCAAATCAGGGACAGTGGACCCGTCCAAAACGAAGATAGCCTACCACTTCTCCACCCTGGTCTTAGTATATGGCCAGCAGCATACCCTGCAGATCGAGCCTCGGGACGAATATGGCAACCCCACCAGTAATTCCACCTCACTGATAGACGAAGTCAACTACAGCGTCCACGTCCACTCGCTGGGCACGGTGGATGACGACAGCCTGGAGGAGTACTACTGTAAGTCAGTGTCATCCAACAAGCAGCTGTGCCAGGTACTGCTGAAAATCACCCTGAGGAAGAAGGGCTGTTTCCGGGCACGCATCTCCTATACCGACCTGCCCCTCAGCAACGGGGAGTTCGACATCATTGTTCTCAGTGAGAATGAGAAGAAGTGTGTGGAGAAGAACGTGTCCACCACAGGGATCAGCATCTACTTTGAGGCGTACCTCTACGGCACAGggaactacagtaactacagtaactcCTCGTGGCAGCTCCCAGCCTCGGCTCTGATGGCCCCTCAGAGACGGCCCTCCATGGGGGACGAGGAGGACGAGCATGACTCCCCTGTAGAGGGCCAGCCGGAGAAGGTCAAGAAACCAAAAAAGGTCTACTGCTACATATCGCCAAAGCAACTGTCAGTGAAGGAGTTTTACCTGAAAATCATTCCATGGCGCCTTTTCACCTTTCGAGTTTGCCCAGGGACAAAGTTCACATACTATGGCCCTGACCCCGTTCACAAGTACTTGACTCTTGTGGTGGATGATGGGATCCAGCCGCCAGTGGAGCTGAGCTGTAAAGACAGAAACATCATGGCTGCCACCTTCATCCGTTTCCTGCACAAGAATATCGGTGGCTCGGAGACGTTCCAGGACAAGGTGAGCTTCTTCCAGAGGGAGCTCAGACACATCCACTCCAAGAGACCTCGCACCAAGACCTGCCTGAAGATCACACGCCACTGCATCCTGGACTCTTCTCTGAAATCCACCCGGAACTTCTCCGTGTCGGACTGGAGTAAGAACTTTGAGGTGGTGTTTCAGGATGAGGAAGctctggactggggagggCCGCGAAGGGAGTGGTTTGAGCTTGTCTGTAAGACCCTGTTTGACACCACCAATCAGCTGTTTACTCGCTTCAGTGACGACAACCAGGGCCTGGTCCACCCCAACGCTGAGCGGCCGGTCCACCTGCGTCTGAAGATGTATGAGTTTGCGGGGCGCGTGGTGGGGAAGTGCCTGTACGAGTCAGCCCTGGGCGGGGCCTACAAGCAGCTGGTCCGCGCTCGCTTCACCCGCTCCTTCCTGGCCCAGCTCATCGGACTCAGGATGAACTACAAATACTTTGAGACGGATGATCAGGAGTTCTACAAAACGAAAGTCTGCTTCATCCTAAACAATGATGTCAGTGAAATGGACCTGGTGTTTGCTGAGGAGAAGTACAAGTCAGGACAGCTGGAGAAGGTGGTGGAGCTGATATCTGGAGGAGCTCAGATTGCTGTCAACAATGAGAACAAGATGCATTATCTGAACCTGCTGGCCCAGTACAGGCTCGCCAGTCAGGTGCGAGACGAGGTGGAGCACTTTCTCAAAGGTTTGAATGAACTTGTTCCGGAGAACCTCCTGGCCATATTTGATGAGAATGAGCTGGAGCTGTTGATGTGCGGTACAGGAGACATCAATGTCCAGGACTTCAAGGCCCATGCTGTGGTCGTAGGAGGGTCGTGGCACTTCAGAGAGAAGGTGATGAAGTGGTTCTGGGCCGTGGTGTCCAGCTTCACCCAGGAGGAGTTGGCTCGCCTGCTGCAGTTCACCACCGGCTCCTCCCAGCTTCCCCCTGGGGGCTTCAACACCCTCTGCCCCTCATTCCAGATCATTGCTGCTCCCACACACAGCACCCTGCCCACCGCACACACCTGTTTTAACCAGCTTTGCCTCCCCACCTATGATTCCTATGAGGAGCTGCACAAGATGCTGAAGCTGGCCATCAGTGAGGGCAGTGAGGGCTTCGGCATGCTCTGAGTGGCCCTATCCCTGGAGCTCACCCCCAGACTCTGAGTGGCCCTATCCCTGGAGCTCACCCCCAGACTATGAGTGGCCCTATCCCTGGAGCTCACCCCCAGACTCTGAGTGGCCCTATCCCTGGAGCTCACCCCCAGACTCTGAGTGGCCCTATCCCTGGAGCTCACCCCCAGACTCTGAGTGGCCCTATTCCTGGAGCTCACCCCCAGACTCTGAGTGGCCCTATTCCTGGAGCTCACCCCCAGACTCTGAGTGGCCCTATCCCTGGAGCTCACCCCCAGAGTCTGAGTGGCCCTATCCCTGGAGCTCACCCCCAGACTCTGAGTGGCCCTATCCCTGGAGCTCACCCCCAGACTCTGAGTGGCCCTATCCCTGGAGCTCCCCGCCAGACTCTGAGTGGCCCTATCCCTGGAGCTCACCCCCAGACTCTGAGTGGCCCTATCCCTGGAGCTCACCCCCAGACTCTGGTCACACTGTGGTCCTGCTCATACAGCAGTGGGGTACCAATGACACCAGCACCAACCAGGCCCCTGGTACGCCTGTTACCCGCTCCATCCGCTTTGGACAATGGACATCCCTCCTCGACTCACACGGGCTACCCATGATCCTCTTTCAGCGGTAGAGGGCATTAAAGGAATTCCACAGGAAGTCCAGGAGGCTCTGGGACGTCGTCAGGTGTCTGCactatgtgtatatactgtacaatgtttGCTTTTCTAATGAAGAACATGACCTAGTGTTAGAAAAGGCTGGGTAGTTTTATTCTAGATGTTAGAGCTGTTTAATTTTACGTTTTTGAGACAGAATATAGAGCTAGTTAAAGAGCCTAGTGAGCTTGGTGTTGTTTTGGTTTTTTGAATTTTATTTTGGAAAAAAGCTGAGGAACATTTAAATGCAAAAGCAGCCTACACAAAGTGTGGAGAAGCTGCGCACCCCATAGCACTTTGGCCTTACCTGATCAGGGaaggatgtgtgtgtatatactgtgaaaagtatgaaaatgtatgtactcATACTTTAAGTCGCTCTGCTAAATgattaaaatgtcaaatgtatatacagta
>XM_036954880.1
CGACGTTTGTTTCCCTGCGCATCTCGGCTTCCGGTTGCCGCTAGCTAgttaaatataataaatacattcaagAACCACCTGCAACTGGTATCCCTCCCATCTTGGCTGGGGGTAGCTGGCCGGCGGCTCAAGTATTTTGGACCTGGCCCAGCCTATGTGGGGAGCAGAAGAGTCTGAGTCAGAGCTGAAGATGGTCTGATGGACCTCCGCTTTTTGCTGACTTTCCTCTTCTGCTCAGTCTCGTGGATCTTCTTCTGGGAGGTGCGCTGGAAGAAAGGCAAAGAAAGTCAGATTGAAGAATGGATTCAAGGCCACAGTCTCTCCGAATACAAACACTTACTTGAAGatgtggagaCTCTGGAGGAGCTGAGCCTGAGTATTCTGACTCGTCTGGAGTACGTGGTGAGAGAGAAGCGGCGCTGGAGGGACATCGCAGAGGCTCATATCCAGCTGCTGCGAGACTTTGCCTTCCAGGAGTGGCTCTGCTCTCAGAGCCTTGAGCACTACTATCATACACTGAAGACCTTGGGTTGTATGACTCTGGATGATCTAGCCCAGTTTGACAGCCAGTTGCAGCTCTCTCTTGCTGCGTGGGGATACTACTACGAAGACTACATCAAGCTGTCCACGGGCGTCAAGGTTCTCCAGGCCTCTAGGGGGAGCCGCGACCAGGACTACGAGATCCAACTCGTGCACAGCCTTGCTGAAAGGCGCCTGAATGAGAAGTGGTCTATCGCGGGAGCTTTTATATTTGGCTGTACTGTAGCACTGTGCTTTCTGATAAGGGACCTCATGTTTTACGTGATTGGTGGAATTACTGTTTCCATCATAGCGTTTGTCTTTACCATCAAGTTCCTATGTGAGCTTGCTGCGCGGGTGGTTAGCTTCCTGCAGAATGAGGATCCCGGGAGAAGGGGTGACCGCAGCATCTACGACTATGTACGAGGGAACTACCTGGACCCGCGCTCCTGCAAGGTGTCCTGGGATTGGAAGGACCCACAGGAAGTGGGCCAGACTATGAGCTTCCGTGTTCACCTCTTCTACAAGAACGGCCAGCCCTTCCCTGCCCACCGACCCGTGGGGTTAAGGGTCAACATCACTCACATAGAGCTGGCCCTAGACATCCCCATCACCCAGGAGGTTCTGCAGGAGCCAGAGTCCAATGTGGTCAAACTGGCCTTCACTGTCCGCAAGGCCGGACGCTATGAGGTAGCTGTCAAACTGGGAGGACTCAACGTGGCCTACAGCCCTTACTACAAGATATTCAAATCAGGGACAGTGGACCCGTCCAAAACGAAGATAGCCTACCACTTCTCCACCCTGGTCTTAGTATATGGCCAGCAGCATACCCTGCAGATCGAGCCTCGGGACGAATATGGCAACCCCACCAGTAATTCCACCTCACTGATAGACGAAGTCAACTACAGCGTCCACGTCCACTCGCTGGGCACGGTGGATGACGACAGCCTGGAGGAGTACTACTGTAAGTCAGTGTCATCCAACAAGCAGCTGTGCCAGGTACTGCTGAAAATCACCCTGAGGAAGAAGGGCTGTTTCCGGGCACGCATCTCCTATACCGACCTGCCCCTCAGCAACGGGGAGTTCGACATCATTGTTCTCAGTGAGAATGAGAAGAAGTGTGTGGAGAAGAACGTGTCCACCACAGGGATCAGCATCTACTTTGAGGCGTACCTCTACGGCACAGggaactacagtaactacagtaactcCTCGTGGCAGCTCCCAGCCTCGGCTCTGATGGCCCCTCAGAGACGGCCCTCCATGGGGGACGAGGAGGACGAGCATGACTCCCCTGTAGAGGGCCAGCCGGAGAAGGTCAAGAAACCAAAAAAGGTCTACTGCTACATATCGCCAAAGCAACTGTCAGTGAAGGAGTTTTACCTGAAAATCATTCCATGGCGCCTTTTCACCTTTCGAGTTTGCCCAGGGACAAAGTTCACATACTATGGCCCTGACCCCGTTCACAAGTACTTGACTCTTGTGGTGGATGATGGGATCCAGCCGCCAGTGGAGCTGAGCTGTAAAGACAGAAACATCATGGCTGCCACCTTCATCCGTTTCCTGCACAAGAATATCGGTGGCTCGGAGACGTTCCAGGACAAGGTGAGCTTCTTCCAGAGGGAGCTCAGACACATCCACTCCAAGAGACCTCGCACCAAGACCTGCCTGAAGATCACACGCCACTGCATCCTGGACTCTTCTCTGAAATCCACCCGGAACTTCTCCGTGTCGGACTGGAGTAAGAACTTTGAGGTGGTGTTTCAGGATGAGGAAGctctggactggggagggCCGCGAAGGGAGTGGTTTGAGCTTGTCTGTAAGACCCTGTTTGACACCACCAATCAGCTGTTTACTCGCTTCAGTGACGACAACCAGGGCCTGGTCCACCCCAACGCTGAGCGGCCGGTCCACCTGCGTCTGAAGATGTATGAGTTTGCGGGGCGCGTGGTGGGGAAGTGCCTGTACGAGTCAGCCCTGGGCGGGGCCTACAAGCAGCTGGTCCGCGCTCGCTTCACCCGCTCCTTCCTGGCCCAGCTCATCGGACTCAGGATGAACTACAAATACTTTGAGACGGATGATCAGGAGTTCTACAAAACGAAAGTCTGCTTCATCCTAAACAATGATGTCAGTGAAATGGACCTGGTGTTTGCTGAGGAGAAGTACAAGTCAGGACAGCTGGAGAAGGTGGTGGAGCTGATATCTGGAGGAGCTCAGATTGCTGTCAACAATGAGAACAAGATGCATTATCTGAACCTGCTGGCCCAGTACAGGCTCGCCAGTCAGGTGCGAGACGAGGTGGAGCACTTTCTCAAAGGTTTGAATGAACTTGTTCCGGAGAACCTCCTGGCCATATTTGATGAGAATGAGCTGGAGCTGTTGATGTGCGGTACAGGAGACATCAATGTCCAGGACTTCAAGGCCCATGCTGTGGTCGTAGGAGGGTCGTGGCACTTCAGAGAGAAGGTGATGAAGTGGTTCTGGGCCGTGGTGTCCAGCTTCACCCAGGAGGAGTTGGCTCGCCTGCTGCAGTTCACCACCGGCTCCTCCCAGCTTCCCCCTGGGGGCTTCAACACCCTCTGCCCCTCATTCCAGATCATTGCTGCTCCCACACACAGCACCCTGCCCACCGCACACACCTGTTTTAACCAGCTTTGCCTCCCCACCTATGATTCCTATGAGGAGCTGCACAAGATGCTGAAGCTGGCCATCAGTGAGGGCAGTGAGGGCTTCGGCATGCTCTGAGTGGCCCTATCCCTGGAGCTCACCCCCAGACTCTGAGTGGCCCTATCCCTGGAGCTCACCCCCAGACTATGAGTGGCCCTATCCCTGGAGCTCACCCCCAGACTCTGAGTGGCCCTATCCCTGGAGCTCACCCCCAGACTCTGAGTGGCCCTATCCCTGGAGCTCACCCCCAGACTCTGAGTGGCCCTATTCCTGGAGCTCACCCCCAGACTCTGAGTGGCCCTATTCCTGGAGCTCACCCCCAGACTCTGAGTGGCCCTATCCCTGGAGCTCACCCCCAGAGTCTGAGTGGCCCTATCCCTGGAGCTCACCCCCAGACTCTGAGTGGCCCTATCCCTGGAGCTCACCCCCAGACTCTGAGTGGCCCTATCCCTGGAGCTCCCCGCCAGACTCTGAGTGGCCCTATCCCTGGAGCTCACCCCCAGACTCTGAGTGGCCCTATCCCTGGAGCTCACCCCCAGACTCTGGTCACACTGTGGTCCTGCTCATACAGCAGTGGGGTACCAATGACACCAGCACCAACCAGGCCCCTGGTACGCCTGTTACCCGCTCCATCCGCTTTGGACAATGGACATCCCTCCTCGACTCACACGGGCTACCCATGATCCTCTTTCAGCGGTAGAGGGCATTAAAGGAATTCCACAGGAAGTCCAGGAGGCTCTGGGACGTCGTCAGGTGTCTGCactatgtgtatatactgtacaatgtttGCTTTTCTAATGAAGAACATGACCTAGTGTTAGAAAAGGCTGGGTAGTTTTATTCTAGATGTTAGAGCTGTTTAATTTTACGTTTTTGAGACAGAATATAGAGCTAGTTAAAGAGCCTAGTGAGCTTGGTGTTGTTTTGGTTTTTTGAATTTTATTTTGGAAAAAAGCTGAGGAACATTTAAATGCAAAAGCAGCCTACACAAAGTGTGGAGAAGCTGCGCACCCCATAGCACTTTGGCCTTACCTGATCAGGGaaggatgtgtgtgtatatactgtgaaaagtatgaaaatgtatgtactcATACTTTAAGTCGCTCTGCTAAATgattaaaatgtcaaatgtatatacagta

Function

NR:

description
PREDICTED: apoptosis-resistant E3 ubiquitin protein ligase 1-like

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K22370 AREL1; apoptosis-resistant E3 ubiquitin protein ligase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954881.1 False 4278 mRNA 0.53 22 43174778 43210365
XM_036954880.1 True 4331 mRNA 0.54 23 43174785 43210365

Neighbor

gene id symbol gene type direction distance location
LOC110497925 LOC106590001 coding upstream 49222 43111702 ~ 43125556 (+)
LOC110497924 esrrb coding upstream 135119 42982245 ~ 43039659 (+)
LOC110498356 NA coding upstream 297436 42862652 ~ 42877342 (+)
LOC110497923 LOC106590872 coding upstream 363300 42790955 ~ 42811478 (+)
ttll5 ttll5 coding upstream 409028 42671240 ~ 42765750 (+)
LOC110497931 LOC106589425 coding downstream 68908 43279273 ~ 43440028 (+)
LOC110498578 LOC106589566 coding downstream 232968 43443333 ~ 43445749 (+)
LOC110497932 LOC106611063 coding downstream 238366 43448731 ~ 43474668 (+)
LOC110497933 LOC106589343 coding downstream 273099 43483464 ~ 43490666 (+)
LOC110498579 LOC106599786 coding downstream 373282 43583647 ~ 43587510 (+)
G1626715 NA non-coding upstream 23261 43149729 ~ 43151517 (+)
G1626679 NA non-coding upstream 82987 43091589 ~ 43091791 (+)
G1626666 NA non-coding upstream 126123 43048376 ~ 43048655 (+)
G1626660 NA non-coding upstream 127849 43046696 ~ 43046929 (+)
G1626657 NA non-coding upstream 129193 43044931 ~ 43045585 (+)
G1626742 NA non-coding downstream 19809 43230174 ~ 43231064 (+)
G1626801 NA non-coding downstream 134151 43344516 ~ 43350575 (+)
G1626836 NA non-coding downstream 212153 43422518 ~ 43422737 (+)
G1626848 NA non-coding downstream 235922 43446287 ~ 43447721 (+)
G1625710 NA other upstream 923207 42250731 ~ 42251571 (+)
G1624524 NA other upstream 1137660 42036328 ~ 42037118 (+)
G1624565 LOC100846954 other upstream 1138834 42035353 ~ 42035944 (+)
tmem260 LOC106593970 other upstream 1145272 41988770 ~ 42029506 (+)
G1624560 NA other upstream 1164448 42009961 ~ 42010330 (+)
G1627319 NA other downstream 604361 43814593 ~ 43816501 (+)
G1628073 LOC106610840 other downstream 1203957 44414322 ~ 44448672 (+)
G1628486 NA other downstream 1472997 44683362 ~ 44748925 (+)
G1628488 NA other downstream 1478017 44688382 ~ 44747446 (+)

Expression


Co-expression Network