LOC110498578 (LOC106589566)


Basic Information

Item Value
gene id LOC110498578
gene name LOC106589566
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 43443333 ~ 43445749 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037607.1
GCCTGTGATTTATTGTGCTCTGACGCCACCCAGTGGCCTTCTAGTACAGCTCAAACACGGACAGTGCAAAACAGATCCTTGGGATGtccttaccctaaaccctaaccttaactagaACCATAACCATTACCTACCCCTAACCaatttaaatgtcaacttcaatgggatATGGACGTCCCAAGGACTCCGGATAGCACGGACCGCTCAACCACAGCGTATGGAAGGATTTTCCCACGGTTATGAGGCTAGTACTGAATTTCAGTTGGATACAGGGAAATTGTGTCGATATCGGTGGATCCTATTTCTTTCGTGAAGGATGGAAAAGCATACATATCCCAGAAACAACGCGCTGTGCCGCTAAATTTGGAGCGTTGAGAAGTGACTACATTGTGCGCACTTTTTGCAGATATTTTCTGAAACACATCGGTGCCCAACATTAGCCTTTCATTGCTAAAGCCCCACTTCCTAGAGTTCAACATCATCATGATCAGGGGTAACAGTGGGTTGAAGCCCAAAGACAATGAAATTAACCCTAAACCCTGGCCAATCAACTACCAGGTTAGCATGTTGAATACTTCAGTGTGGTTTGACAGTCCCATAAAAATATTAACTTATCACTGTGCCTTTGTTCTGTTTCTGTAAAGGGATAGAGGTTCTCAGGAGTGAATGAGACAGAATACCGTGTCTACCAGTTAGGGAACCCTGTGATCTGGTGGCTGAACCTGGTCAGTCTGGGCCTGTATGTGGTTATggtggcagcagcctctctggcCCGCCGCAGAGGAGTCCAGCTGGACAAGAGAAAAAGCATTGTTGCGTGCTGATGGAAGGTGGAGGACTGCTGTTCCTGAGCTGGCTGCTGCACTACGTACCCTTCTACACCACAGGCCACATcctttactaccaccactacttccCTGCCATGCTCTTCAGCAGCATGCTAACAGATACAGTGGGCCTACCACAAAAACACATGCTCCCCATAATTCCCCCGGTTAGTATAGGTCCTTGGAGTGGAAGGTTGGGAGTTCGATTCATACCAAAAGACAAAAAATATGATCCGATGCGTCTCTGCCTGGAGCCACCACAGCATCAAGGAGATCGATTGGGGGTAAGgccatcaagctgcctcatgctgCAGAAACAGGAGGTAGGCTCCTGCTCCAATGAGCTGTTCCGGCTTGCACAAGgctacttacagttgaagtcggaagtttacatacacttaggttggagtcattaaaactaatttttcaaccactccacaaatttcttgttaacaaactatagttttggcaa
>XR_005037608.1
GCCTGTGATTTATTGTGCTCTGACGCCACCCAGTGGCCTTCTAGTACAGCTCAAACACGGACAGTGCAAAACAGATCCTTGGGATGtccttaccctaaaccctaaccttaactagaACCATAACCATTACCTACCCCTAACCaatttaaatgtcaacttcaatgggatATGGACGTCCCAAGGACTCCGGATAGCACGGACCGCTCAACCACAGCGTATGGAAGGATTTTCCCACGGTTATGAGGCTAGTACTGAATTTCAGTTGGATACAGGGAAATTGTGTCGATATCGGTGGATCCTATTTCTTTCGTGAAGGATGGAAAAGCATACATATCCCAGAAACAACGCGCTGTGCCGCTAAATTTGGAGCGTTGAGAAGTGACTACATTGTGCGCACTTTTTGCAGATATTTTCTGAAACACATCGGTGCCCAACATTAGCCTTTCATTGCTAAAGCCCCACTTCCTAGAGTTCAACATCATCATGATCAGGGGTAACAGTGGGTTGAAGCCCAAAGACAATGAAATTAACCCTAAACCCTGGCCAATCAACTACCAGGGATAGAGGTTCTCAGGAGTGAATGAGACAGAATACCGTGTCTACCAGTTAGGGAACCCTGTGATCTGGTGGCTGAACCTGGTCAGTCTGGGCCTGTATGTGGTTATggtggcagcagcctctctggcCCGCCGCAGAGGAGTCCAGCTGGACAAGAGAAAAAGCATTGTTGCGTGCTGATGGAAGGTGGAGGACTGCTGTTCCTGAGCTGGCTGCTGCACTACGTACCCTTCTACACCACAGGCCACATcctttactaccaccactacttccCTGCCATGCTCTTCAGCAGCATGCTAACAGATACAGTGGGCCTACCACAAAAACACATGCTCCCCATAATTCCCCCGGTTAGTATAGGTCCTTGGAGTGGAAGGTTGGGAGTTCGATTCATACCAAAAGACAAAAAATATGATCCGATGCGTCTCTGCCTGGAGCCACCACAGCATCAAGGAGATCGATTGGGGGTAAGgccatcaagctgcctcatgctgCAGAAACAGGAGGTAGGCTCCTGCTCCAATGAGCTGTTCCGGCTTGCACAAGgctacttacagttgaagtcggaagtttacatacacttaggttggagtcattaaaactaatttttcaaccactccacaaatttcttgttaacaaactatagttttggcaa

Function

NR:

description
PREDICTED: protein O-mannosyl-transferase 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037607.1 False 1299 mRNA 0.47 5 43443333 43445749
XR_005037608.1 True 1213 mRNA 0.48 6 43443333 43445749

Neighbor

gene id symbol gene type direction distance location
LOC110497931 LOC106589425 coding upstream 3305 43279273 ~ 43440028 (+)
LOC110498360 LOC106589621 coding upstream 232968 43174778 ~ 43210365 (+)
LOC110497925 LOC106590001 coding upstream 317777 43111702 ~ 43125556 (+)
LOC110497924 esrrb coding upstream 403674 42982245 ~ 43039659 (+)
LOC110498356 NA coding upstream 565991 42862652 ~ 42877342 (+)
LOC110497932 LOC106611063 coding downstream 2982 43448731 ~ 43474668 (+)
LOC110497933 LOC106589343 coding downstream 37715 43483464 ~ 43490666 (+)
LOC110498579 LOC106599786 coding downstream 137898 43583647 ~ 43587510 (+)
LOC110497936 LOC106589077 coding downstream 182376 43628125 ~ 43635200 (+)
LOC110498580 LOC106599766 coding downstream 192730 43638479 ~ 43643478 (+)
G1626836 NA non-coding upstream 20596 43422518 ~ 43422737 (+)
G1626801 NA non-coding upstream 92758 43344516 ~ 43350575 (+)
G1626742 NA non-coding upstream 212269 43230174 ~ 43231064 (+)
G1626715 NA non-coding upstream 291816 43149729 ~ 43151517 (+)
G1626848 NA non-coding downstream 538 43446287 ~ 43447721 (+)
G1626877 NA non-coding downstream 35229 43480978 ~ 43481227 (+)
G1626885 NA non-coding downstream 48494 43494243 ~ 43494481 (+)
G1626892 NA non-coding downstream 58249 43503998 ~ 43504418 (+)
G1626893 NA non-coding downstream 59833 43505582 ~ 43505804 (+)
G1625710 NA other upstream 1191762 42250731 ~ 42251571 (+)
G1624524 NA other upstream 1406215 42036328 ~ 42037118 (+)
G1624565 LOC100846954 other upstream 1407389 42035353 ~ 42035944 (+)
tmem260 LOC106593970 other upstream 1413827 41988770 ~ 42029506 (+)
G1627319 NA other downstream 368977 43814593 ~ 43816501 (+)
G1628073 LOC106610840 other downstream 968573 44414322 ~ 44448672 (+)
G1628486 NA other downstream 1237613 44683362 ~ 44748925 (+)
G1628488 NA other downstream 1242633 44688382 ~ 44747446 (+)
G1628550 NA other downstream 1384173 44829922 ~ 44886234 (+)

Expression


Co-expression Network