LOC110497934 (LOC106589256)


Basic Information

Item Value
gene id LOC110497934
gene name LOC106589256
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 43511968 ~ 43526477 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574412.2
CTGGAGGCATCATCACCGGCACCGCGCACTGAAACACATGAGCAGGGGTGATTTTACGACAAAGCAAACTCAGTAGACTAGGCTACAACCGACTTTGTAGCCTATCGCAGTGGATGGAAAACATATATTCAACGTACTTTATATGAGCTATAGCTATTATTGATAGTTATTTAGAGAGTTATTGCGGAAGTGAAACTATGTGGTGAGTGTGCGTAATCAACACCTCTCCAATACGCAGCGGTCTGTCTTGTCAGCTCAGAGAGCGCGGTTCGTCACTGCATGCTCCAGTAGAGACTGAAAGTTACCTGCACATTGGTCCTCGTTGTCTTTTATCAATGTCTCCAATGTTATGTGGACTACAGAGTTGCCGGGGTATGATTTGGAACCCCATTCCCTTTCCATCAGCTCCTGGACAACAGTAAAAGCGGAATGCTATTGAGGCAGTCCGTGGCAGGATCTTGTAGAATAGCTCCCAGCCTGTTATCAACGTTTGCAGTCTATCCACTCTGATCTCCCTGaagtccctctctgtcccccaccaTGGAGAGTCTGAGTGAACTGCAGAACCCGCTCCTAGATAAGACCAGCAGCAGACACATGGTCCACAACGACTACCAGGCTTACCAGGGCGACTACCCGAACCGTCAGTGCCAGGAGAACATCATTGGCTACTTCGTCACAGGGAGCAACGGCAAGACCAAGGCCCAGCAGTTTCTGGATGCCACCTCTCTGCACCTGGCAGTGGAGGCCTTCTATAGGCCCAACTTAATCCTGTACAAGGACGATGTCAGCCTCCAGAGCAAGGACTCTAAGAGCGAGAGCTCTGAGACCACCTTCACAGAGAACAAGGACAGTGTAGTGGGAGTGGAGGGAGCCCCCATAGAGGACCCTCAGGACAAACTACTGGGAGAGAAGGATGTGAAGATCCAAACAGTCTCCtatgaggtggaggaggagggacatgAGTATGAGAGCGACAGCTCCAGTGACACTGAGAGTGAGGACAACTTCATCATGCTGCCCCCTCGGGACCACCTGGGCCTGGCCATCTTCTCCATGCTCTGCTGCTTCTGGCCCCTAGGGATCGCTGCCTTCTACTTCTCCCAGAGGACTAGCAAGGCCATGGCTAAGGGAGACTTCTCTAGGGCAGGCCGTAGCTCCAGAAGAGCCCTGTTTCTCGCTGCTCTCTCCATCACCATTGGGGCAGGGATGTACgtgggggtggtggtggcccTTGTAGCCTACCTGTCCAAGTCTAGGGGACACATATAGGAGCAGGACCAGGGCCACAGGGGAGAGTGCTTGGGAAATCTTCCCTGCTATGGCAACCCTGAAGCACCAGTCTACATGTGGCTCTGTAGGAATGTTTTGGTTTTGGAgcagctgagaggaggaggagaaggaccagggagagagacagccacTTTTGTCTAGGTCTATCTACCTGGTAAGGATTTTTGAGGATCACAAAATAATGAGGGAAAACCCCTAAAGGAAAGAAGAACTATTGTCCCACAATGACTGTTCTGCTCCTCTACATGAATGAGATGAAAGATAGTGAAGTAGATGTGATGATACAGTACTACCTAAATTTGAGAGCTAACCACCTTCACTGATCTTCATTATGATCATTGGAGGCCCCGTCCATATTTGTAGCTGTTCTCTGTAAATACTTCTTGTGCAGATGGTGTTTTTGGTCGTATTGATTTTCATGCCACAGTGAGTTATAATGAACCTGCCATTGTGTCTAAAATGCAAAACCAAGAAGGCATACTTTCATGATTATTCATCAAACTGTTCGTCAGTCCAGTCCAGGAGAATCAACTGCCATCCCTTAATAGACTCTAGACAAAGAAAACTGTGTTTATTGTGCACTGTATATCCTGTCAGAATAAATACATTGAATAATGA

Function

NR:

description
synapse differentiation-inducing gene protein 1-like

GO: NA

KEGG:

id description
K23906 SYNDIG1L; synapse differentiation-inducing gene protein 1-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574412.2 True 1911 mRNA 0.49 4 43511968 43526477

Neighbor

gene id symbol gene type direction distance location
LOC110497930 LOC106589732 coding downstream 337113 43171743 ~ 43174855 (-)
LOC110497929 LOC106589786 coding downstream 340520 43162498 ~ 43171448 (-)
LOC110497927 lrrc74a coding downstream 363504 43141522 ~ 43148464 (-)
LOC110498359 LOC106599825 coding downstream 372538 43136200 ~ 43139430 (-)
LOC110497926 LOC106589845 coding downstream 376476 43125434 ~ 43135492 (-)
LOC110497935 LOC106589171 coding upstream 30746 43557223 ~ 43582363 (-)
LOC110497940 LOC106588600 coding upstream 213495 43739972 ~ 43805811 (-)
LOC110497941 LOC106588489 coding upstream 288234 43814711 ~ 43890059 (-)
gpx2 gpx2 coding upstream 379926 43906403 ~ 43907894 (-)
LOC110497943 LOC106588404 coding upstream 384710 43911187 ~ 43916292 (-)
G1627084 NA non-coding downstream 1826 43509793 ~ 43510142 (-)
G1627133 NA non-coding downstream 14424 43497302 ~ 43497544 (-)
G1627128 NA non-coding downstream 17260 43494376 ~ 43494708 (-)
G1627091 NA non-coding downstream 76501 43434967 ~ 43435467 (-)
G1627076 NA non-coding downstream 91509 43420120 ~ 43420459 (-)
G1627251 NA non-coding upstream 90194 43616671 ~ 43616911 (-)
G1627268 NA non-coding upstream 95743 43622220 ~ 43622423 (-)
G1627566 NA non-coding upstream 122660 43649137 ~ 43649401 (-)
G1627567 NA non-coding upstream 123159 43649636 ~ 43650003 (-)
G1627568 NA non-coding upstream 123700 43650177 ~ 43650381 (-)
G1627068 NA other downstream 102859 43408727 ~ 43409109 (-)
G1626324 NA other downstream 673534 42759294 ~ 42838434 (-)
G1626232 LOC106611303 other downstream 870695 42640449 ~ 42641273 (-)
LOC110498355 atg2b other downstream 1041266 42465705 ~ 42480874 (-)
G1626105 NA other downstream 1256171 42255235 ~ 42255797 (-)
LOC110498001 NA other upstream 2477288 46003765 ~ 46008718 (-)
G1631005 NA other upstream 3092730 46619207 ~ 46629506 (-)
G1631120 LOC106612182 other upstream 3303857 46830334 ~ 46830650 (-)
G1632192 LOC106575636 other upstream 4389818 47916295 ~ 47980466 (-)
G1632228 NA other upstream 4442037 47968514 ~ 47970332 (-)

Expression


Co-expression Network