LOC110497935 (LOC106589171)


Basic Information

Item Value
gene id LOC110497935
gene name LOC106589171
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 43557223 ~ 43582363 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574413.2
AGCACGATGCATAATTTGTGCCGTTCTCTTTGACAAGTCAGGACGATGGTGAGCTCCCCGCCGGCGCACGGCCGCACACTGAACCAAGCATACAATGTTGCTCTCATCGAAACGGACACAGATGGATAGTCTCGTTCAACCACTTGTTGCCCAGTATCTCGCTATGGGCTGCCAATCCAAAGAAAATGGACAAAATGAAAATGTGGGCTCGAATGGAAAGGAAAAAGAACATTCACGTCTCTCTCCGGGACCGGGTAGTGGCTCCAGATCTAAGGTCTGTCCACCGGTGCCTGCCCGGCCTCAGCGGTTCAACAGGCCCAACCAGGCCCAGATGACCCAGGGCAAGGTCACAATGTCTCTGCCAGGACACTTCACAAAGGGggccagctgggaggaggtgatcCAGGCCTGTATCCAGTCCTTTGACGTGGAGGGCTCTGTAtgtgggagcagccacctgatgAACATCACCCTGACCATGCACCGACTCCTCATGTCCTCCAGTGACCTCCTGGAGAAACTCACCTCCCTATTTAAAAGCGCCGTGGAGAATGAGCAGTCCACAGAATGTGAGAGGATCTGCTACTTCATCAGGTATTGGATCCAGGAGTTCTGGACAATGTTCCGGTTGCACAGCAGCCTGTCTGACTCCATGGAACAGTTCCAGGATCTGATCAGAGATCAGGGCCAGGAGAGGCTGTGCCCTCTGTTGCAGACTCAATGGATAAATGACAGGCACTGGTCTCAGAAGCCCAGTCAGAAAATCAAGGCTAACAGTAGTAAGAAGAGGAAAGTGTCTCTGCTGTTTGATCACCTGGAGCCCATTGAGCTGGCTGAGCACCTCACCTACCTGGAGTTCAAGTCCTTCTGTAGAATATCATTTGCAGACTACCAGAACTACATCCGCAGTTGCTGCATGAAGGACAACCCCATGATGGAACGTTCCATTACATTGTGTAATGGTATCTCACAGTGGGTGCAGCTCATGGTTCTGAGTCGGCCTACAGCTCAGCTGAGAGCAGAGGTTTTCACCAAGTTCATCCATGTGGCTCAGAGCCTTCATCTTATGCACAACTTCAATACACTAATGGCTGTGGTGGGGGGCCTATGCCACAGCTCCATCTCCAGACTTAAAGAGACCAGTTCACATGTATCCCACGAGGTCACCAAGGTGCTGAATGAGATGACagacctcctgtcctcctgtaggAACTATGACAACTACCGTCAGGCGTACAGCAGGTGTGCAGGCTTTAAGATCCCCATCCTGGGGGTTCACCTCAAGGACCTGATCTCAGTCAACGAGGCCATGTCAGACTACGTAGAGGACAACAAGGTGAATGTTCAGAAGCTCCAGGCTTTGTACAACCACATCAACGAGCTGATCCAGCTACAGCAGATCACCCCACAGCTCGATGCCAACAAAGACCTGGTCCACCTTCTCACGCTGTCCCTGGACCTCTACTACACAGAGGATGAGATTTATGAGCTGTCTTACACCAGGGAGCCCAAGAACAGCAAAGCACCCCCCGCCACCCCCTCTAGACCTCCAGTGGTTGTGAACTGGGCTTCAGGAGTGCCCCCAAAACCTGACCCAAAAACCATCAGCAAACATGTGCAAAGAATGGTGGATTCCGTGTTTAAAAACTATGACCATGATGAGAATGGCTTCATCTCTCAAGGGGACTTTGAGAAAATTGCTGCTAGCTTTCCATTCTCTTTCTGTGTCATGGACAAAGAGAAGGAAGGCCTCATCAGCAGAGAGGAGATCACAGCCTATTTCATGCGTGCTAGTGTCATCTGTTCCAAACTGGGTCTTGGCTTTGTCCACAACTTTCAGGAGACCACCTACATGAAGCCCACATTCTGTGACAACTGCTCCGGATTTTTGTGGGGCGTCATAAAACAAGGCTACAGATGCAGAGACTGTGGTATGAACTGCCATAGGCTGTGTAAGGATCAGGTGGCGTTTGAGTGTAAGAAGAATGCCAAAGGCAGTAGCACCTCTGAAGGTCCACTAACGCCAGACTCCACACCCAGCACCACATGTGGCCCGGAAGGCTCAGAAGAGGGGCCTTTCCCGTACCCCTCAGAGGAATGTAGGGACTGGAGCCTTGACTCACCGGCCCTCTCCCATCTGAGGCTCCCCCCTGAGCTGGCCATTCCTGTGGGGGTCCACCGCAGCACCCAGACAGAGGGCCCCCACGCCCCTGCCCCCCCTCAAGAGCCTAGTCGGCTGCAGCCAGTACAATCCTCTCTTCTGGCCCCTGTACCCTCCTCTCTCTTGGCCCCCAtacccccctccctcaccccatGCCCCAGCCCGGTGCCCCAACGCAAACGACGGGCCTACGCCAAGTGGGAGAACAGAGCCTCTACAGTGCTACAGCCCAAGGAGCTGGACGAAGACAACAAACCCACCTATGATACTCTAGAAACGGAGAACCAGAAGCTTCAGAAGAACAACGAGACGCTGCGTAAGAAGCTGAGGGAGACGCAGCGCGAGGTAGAGATCCTGCAGACACTCCTAAAGAGGCACGCCCTTCACTCCGTGGTGGaggactcctcctcctcctcctagccaGGAACGCCCCTCAGCCGGTCAGACACACCCACTCTATGACATCACAGGTGATGCTCAGCCATCTGTCTCCAGAGCCACTGACAGTACTGTATGTCTTGGAGGACCCTAGTGCCACACAGTCGAGAAGATACACAGAGGGACCAAAAACTCCCTGTGAGGCGACGCCGTTACTCACAGTATGGTATATACAGCCAGTCTTAACACCAGTTGCAGCCAATCACAGCCAAAACGGGGTTATGAGGCAAAACCAATGAAAGTACCGTCCTGAATAGGACACAGACAATCAAAGTACAGTACCAGCCATCATGGAACATAGCCAAAACATATCCAATCAGTGTGCCATCGGCTTTGGGACTCTGACAATCAGAAAACCACACAGTATGGCAGAAAGGCCAGGAAACTGGAGAAGTTCATTCAGGTGGACTGTGTAGTTATTGTCCTGCCTTAGGTAATAACAAGAATGCATATTGTATACAACATGTAAATCCACGTGATTTCAATGTTACTGTCCATATTTATTGTTAAAACACTACAAACTCTAGAAAAAGATAAGCTGTTCCATTTTTTTATACATGTAGATATAGACAAATAATAGTTTTGTATGTATGTGTAAGACGTTTTATCGAAAGAATAGATTCAACCACAGTTTTCTCATGTATATTTCATCAGCTCAGGGTTGTCCATAGTAGCAATTAACATAATATTAGATGTTTCACCAATGACATACCGTGTAAATACCCTAAGCGCATGATATATTGTGGTGCCATCGTACCAGTATTTCTCTCAAGATGTCCTCTCTCAGTATTGCTGTCATAATGAATGTTATAATAAAGACATATTCTCTATTAGTCA
>XM_021574414.2
TGAGAATAATCTTTATTGTCACTGCATGGTGTGCGCATAAAGAAGACTGTACATTTAGAATAAAGATTGCACTGTATGCAAAATTGCTGCAGGCAGACAGAAAGTTCCTCAACTGGAGAGTTATCTGACGTCTCTCTCCGGGACCGGGTAGTGGCTCCAGATCTAAGGTCTGTCCACCGGTGCCTGCCCGGCCTCAGCGGTTCAACAGGCCCAACCAGGCCCAGATGACCCAGGGCAAGGTCACAATGTCTCTGCCAGGACACTTCACAAAGGGggccagctgggaggaggtgatcCAGGCCTGTATCCAGTCCTTTGACGTGGAGGGCTCTGTAtgtgggagcagccacctgatgAACATCACCCTGACCATGCACCGACTCCTCATGTCCTCCAGTGACCTCCTGGAGAAACTCACCTCCCTATTTAAAAGCGCCGTGGAGAATGAGCAGTCCACAGAATGTGAGAGGATCTGCTACTTCATCAGGTATTGGATCCAGGAGTTCTGGACAATGTTCCGGTTGCACAGCAGCCTGTCTGACTCCATGGAACAGTTCCAGGATCTGATCAGAGATCAGGGCCAGGAGAGGCTGTGCCCTCTGTTGCAGACTCAATGGATAAATGACAGGCACTGGTCTCAGAAGCCCAGTCAGAAAATCAAGGCTAACAGTAGTAAGAAGAGGAAAGTGTCTCTGCTGTTTGATCACCTGGAGCCCATTGAGCTGGCTGAGCACCTCACCTACCTGGAGTTCAAGTCCTTCTGTAGAATATCATTTGCAGACTACCAGAACTACATCCGCAGTTGCTGCATGAAGGACAACCCCATGATGGAACGTTCCATTACATTGTGTAATGGTATCTCACAGTGGGTGCAGCTCATGGTTCTGAGTCGGCCTACAGCTCAGCTGAGAGCAGAGGTTTTCACCAAGTTCATCCATGTGGCTCAGAGCCTTCATCTTATGCACAACTTCAATACACTAATGGCTGTGGTGGGGGGCCTATGCCACAGCTCCATCTCCAGACTTAAAGAGACCAGTTCACATGTATCCCACGAGGTCACCAAGGTGCTGAATGAGATGACagacctcctgtcctcctgtaggAACTATGACAACTACCGTCAGGCGTACAGCAGGTGTGCAGGCTTTAAGATCCCCATCCTGGGGGTTCACCTCAAGGACCTGATCTCAGTCAACGAGGCCATGTCAGACTACGTAGAGGACAACAAGGTGAATGTTCAGAAGCTCCAGGCTTTGTACAACCACATCAACGAGCTGATCCAGCTACAGCAGATCACCCCACAGCTCGATGCCAACAAAGACCTGGTCCACCTTCTCACGCTGTCCCTGGACCTCTACTACACAGAGGATGAGATTTATGAGCTGTCTTACACCAGGGAGCCCAAGAACAGCAAAGCACCCCCCGCCACCCCCTCTAGACCTCCAGTGGTTGTGAACTGGGCTTCAGGAGTGCCCCCAAAACCTGACCCAAAAACCATCAGCAAACATGTGCAAAGAATGGTGGATTCCGTGTTTAAAAACTATGACCATGATGAGAATGGCTTCATCTCTCAAGGGGACTTTGAGAAAATTGCTGCTAGCTTTCCATTCTCTTTCTGTGTCATGGACAAAGAGAAGGAAGGCCTCATCAGCAGAGAGGAGATCACAGCCTATTTCATGCGTGCTAGTGTCATCTGTTCCAAACTGGGTCTTGGCTTTGTCCACAACTTTCAGGAGACCACCTACATGAAGCCCACATTCTGTGACAACTGCTCCGGATTTTTGTGGGGCGTCATAAAACAAGGCTACAGATGCAGAGACTGTGGTATGAACTGCCATAGGCTGTGTAAGGATCAGGTGGCGTTTGAGTGTAAGAAGAATGCCAAAGGCAGTAGCACCTCTGAAGGTCCACTAACGCCAGACTCCACACCCAGCACCACATGTGGCCCGGAAGGCTCAGAAGAGGGGCCTTTCCCGTACCCCTCAGAGGAATGTAGGGACTGGAGCCTTGACTCACCGGCCCTCTCCCATCTGAGGCTCCCCCCTGAGCTGGCCATTCCTGTGGGGGTCCACCGCAGCACCCAGACAGAGGGCCCCCACGCCCCTGCCCCCCCTCAAGAGCCTAGTCGGCTGCAGCCAGTACAATCCTCTCTTCTGGCCCCTGTACCCTCCTCTCTCTTGGCCCCCAtacccccctccctcaccccatGCCCCAGCCCGGTGCCCCAACGCAAACGACGGGCCTACGCCAAGTGGGAGAACAGAGCCTCTACAGTGCTACAGCCCAAGGAGCTGGACGAAGACAACAAACCCACCTATGATACTCTAGAAACGGAGAACCAGAAGCTTCAGAAGAACAACGAGACGCTGCGTAAGAAGCTGAGGGAGACGCAGCGCGAGGTAGAGATCCTGCAGACACTCCTAAAGAGGCACGCCCTTCACTCCGTGGTGGaggactcctcctcctcctcctagccaGGAACGCCCCTCAGCCGGTCAGACACACCCACTCTATGACATCACAGGTGATGCTCAGCCATCTGTCTCCAGAGCCACTGACAGTACTGTATGTCTTGGAGGACCCTAGTGCCACACAGTCGAGAAGATACACAGAGGGACCAAAAACTCCCTGTGAGGCGACGCCGTTACTCACAGTATGGTATATACAGCCAGTCTTAACACCAGTTGCAGCCAATCACAGCCAAAACGGGGTTATGAGGCAAAACCAATGAAAGTACCGTCCTGAATAGGACACAGACAATCAAAGTACAGTACCAGCCATCATGGAACATAGCCAAAACATATCCAATCAGTGTGCCATCGGCTTTGGGACTCTGACAATCAGAAAACCACACAGTATGGCAGAAAGGCCAGGAAACTGGAGAAGTTCATTCAGGTGGACTGTGTAGTTATTGTCCTGCCTTAGGTAATAACAAGAATGCATATTGTATACAACATGTAAATCCACGTGATTTCAATGTTACTGTCCATATTTATTGTTAAAACACTACAAACTCTAGAAAAAGATAAGCTGTTCCATTTTTTTATACATGTAGATATAGACAAATAATAGTTTTGTATGTATGTGTAAGACGTTTTATCGAAAGAATAGATTCAACCACAGTTTTCTCATGTATATTTCATCAGCTCAGGGTTGTCCATAGTAGCAATTAACATAATATTAGATGTTTCACCAATGACATACCGTGTAAATACCCTAAGCGCATGATATATTGTGGTGCCATCGTACCAGTATTTCTCTCAAGATGTCCTCTCTCAGTATTGCTGTCATAATGAATGTTATAATAAAGACATATTCTCTATTAGTCA

Function

NR:

description
RAS guanyl-releasing protein 1-like isoform X1

GO: NA

KEGG:

id description
K04350 RASGRP1; RAS guanyl-releasing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574413.2 False 3436 mRNA 0.50 17 43557223 43578223
XM_021574414.2 True 3329 mRNA 0.50 17 43557223 43582363

Neighbor

gene id symbol gene type direction distance location
LOC110497934 LOC106589256 coding downstream 30746 43511968 ~ 43526477 (-)
LOC110497930 LOC106589732 coding downstream 382368 43171743 ~ 43174855 (-)
LOC110497929 LOC106589786 coding downstream 385775 43162498 ~ 43171448 (-)
LOC110497927 lrrc74a coding downstream 408759 43141522 ~ 43148464 (-)
LOC110498359 LOC106599825 coding downstream 417793 43136200 ~ 43139430 (-)
LOC110497940 LOC106588600 coding upstream 157609 43739972 ~ 43805811 (-)
LOC110497941 LOC106588489 coding upstream 232348 43814711 ~ 43890059 (-)
gpx2 gpx2 coding upstream 324040 43906403 ~ 43907894 (-)
LOC110497943 LOC106588404 coding upstream 328824 43911187 ~ 43916292 (-)
LOC110497944 LOC106588122 coding upstream 336307 43918670 ~ 43923050 (-)
G1627139 NA non-coding downstream 34564 43516416 ~ 43522659 (-)
G1627084 NA non-coding downstream 47081 43509793 ~ 43510142 (-)
G1627133 NA non-coding downstream 59679 43497302 ~ 43497544 (-)
G1627128 NA non-coding downstream 62515 43494376 ~ 43494708 (-)
G1627091 NA non-coding downstream 121756 43434967 ~ 43435467 (-)
G1627251 NA non-coding upstream 34308 43616671 ~ 43616911 (-)
G1627268 NA non-coding upstream 39857 43622220 ~ 43622423 (-)
G1627566 NA non-coding upstream 66774 43649137 ~ 43649401 (-)
G1627567 NA non-coding upstream 67273 43649636 ~ 43650003 (-)
G1627568 NA non-coding upstream 67814 43650177 ~ 43650381 (-)
G1627068 NA other downstream 148114 43408727 ~ 43409109 (-)
G1626324 NA other downstream 718789 42759294 ~ 42838434 (-)
G1626232 LOC106611303 other downstream 915950 42640449 ~ 42641273 (-)
LOC110498355 atg2b other downstream 1086521 42465705 ~ 42480874 (-)
G1626105 NA other downstream 1301426 42255235 ~ 42255797 (-)
LOC110498001 NA other upstream 2421402 46003765 ~ 46008718 (-)
G1631005 NA other upstream 3036844 46619207 ~ 46629506 (-)
G1631120 LOC106612182 other upstream 3247971 46830334 ~ 46830650 (-)
G1632192 LOC106575636 other upstream 4333932 47916295 ~ 47980466 (-)
G1632228 NA other upstream 4386151 47968514 ~ 47970332 (-)

Expression


Co-expression Network