LOC110498579 (LOC106599786)


Basic Information

Item Value
gene id LOC110498579
gene name LOC106599786
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 43583647 ~ 43587510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575233.2
CATGCTCTCTCCACCTAGATGATGCACATCCGGAAGCAGCAGGTGATCGAGATAGGAGCAGACGGGGTTGGAACGTTCCAGCACGAGAGAGTCTGTTGGCTGCagATTGCCACTAAGAACAAGGTGTACCTCTTTGACATCCTGATGCTTGAAGCCCGGGCCTTCAAGAACAGCCTGTCCATGATCCTGGAAAATAACCACATTTTGAAGGTCACCTATAGCTGCCAGAGGATTGCCGAATGTCTGAGGGCTCAGTTTGGAGTGAATCTCACCAATGTCTTTGACACGCAGGTGGCAGATATCCTGTGCTTCTATACAGAGACAGGTGGCTTCCTGCTAGCAGGTGGTGAGCCTACATCTGAAGATGCCCTCATCACGACTCTCCTCTCTCAAGATCAAGTCTCTGCTCACCAAGAGCAGTGTTCTGGAGCTGCCTAGGGAGCTGCGGCAGGAGTGGGCCATCGACCGTTACCCTGTCTCTGAGCAGGGCCTGCTGGAGCGCTCCAACCCCAGACCCCTACCCCCATCACAGGATGGGCAGGGCCAGAACATAGCCACCCAAAGACAACCTGACCCCCCTGTCCCCACAGCAGAGGAGCCTGTAGCCCCAGGACCAGTACCAGGGCTGCAGGCCCCAGCAGAGCAGAGACCCCCTGTCCCAGTAATACCCCGTGGGCATCTGATCTCCATGCTATGCCCAGTGCCCTGACCCCAGAGGTCAAGCAGAGCTCCAGGAAACAGCCATCTGGAGTCGTCAGCCCAGTGGCTCCATCAGGATCAGGAGAACCAGGACTCATGGAGATAGTGATGGTCACAATGTCAGGCAGCGGGAGGTCTCTGATGAAAGATGCAGCACCACCAACCCTCCCTGccttccctccctgccttcctcttCCTGGGAAGAGGCCTGGTTTTCCCGATACCAGCGGCCCAGATCCCTAAGGAGAGCCCCAGGGTTCTAAAGACCCAGGCCCCAGTGGGGAGGGTAGAGGTGCCTGTCCACCCAGGCCCAAGACTCAGCCCAGGACAGTGAGCTGTGCCCCAGCAGGCTGCCCTTTCTACTGCCATGCCTGAAAACATCCCTGGGGCAGAGAGAGGCCTCTTCATCCAGAAACCCCAAggtctcacctctcctctcagtATCTCCTTCATTTCCTTTAGAAATACTTAAGAGGACCACCTATGGTTGTGAAGGGTTGGTtgaaaattacttgtgtaattGTTTATTCTACAaagaccactagatggcagtaaatTGTCCATTTTGTTTGCAAATGTAAATTGCATCAATGTTTGGGGGGAAACAGTCATGGTTCAGTTAAATGGTTTTCTATTTCAAATGGAAAAACAACAGTAGATTCACATCAAATTAAAATCGGATGAGAGATATTTTGAAAATTCTGTATCATGTCGACTAGTTTACCTTGTGTACATGGCTTAATTTGAGTAAATTTTTTTGTTATTCAAATTGCTGTTCACACTTGTTACAAATGTCAATTAAACACCAG

Function

NR:

description
piRNA biogenesis protein EXD1-like

GO: NA

KEGG:

id description
K18740 EXD1, EGL; exonuclease 3'-5' domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575233.2 True 1508 mRNA 0.51 5 43583647 43587510

Neighbor

gene id symbol gene type direction distance location
LOC110497933 LOC106589343 coding upstream 92981 43483464 ~ 43490666 (+)
LOC110497932 LOC106611063 coding upstream 108979 43448731 ~ 43474668 (+)
LOC110498578 LOC106589566 coding upstream 137898 43443333 ~ 43445749 (+)
LOC110497931 LOC106589425 coding upstream 143619 43279273 ~ 43440028 (+)
LOC110498360 LOC106589621 coding upstream 373282 43174778 ~ 43210365 (+)
LOC110497936 LOC106589077 coding downstream 40615 43628125 ~ 43635200 (+)
LOC110498580 LOC106599766 coding downstream 50969 43638479 ~ 43643478 (+)
LOC110497938 LOC106588908 coding downstream 96748 43684258 ~ 43694931 (+)
LOC110498362 LOC106588971 coding downstream 107712 43695222 ~ 43735408 (+)
LOC110497947 LOC106588052 coding downstream 339562 43927072 ~ 43931372 (+)
G1627157 NA non-coding upstream 47385 43536052 ~ 43536262 (+)
G1627148 NA non-coding upstream 52927 43530509 ~ 43530720 (+)
G1626893 NA non-coding upstream 77843 43505582 ~ 43505804 (+)
G1626892 NA non-coding upstream 79229 43503998 ~ 43504418 (+)
G1626885 NA non-coding upstream 89166 43494243 ~ 43494481 (+)
G1627212 NA non-coding downstream 8444 43595954 ~ 43596319 (+)
G1627353 NA non-coding downstream 204188 43791698 ~ 43792446 (+)
G1627367 NA non-coding downstream 225361 43812871 ~ 43813077 (+)
G1627319 NA non-coding downstream 227083 43814593 ~ 43816501 (+)
G1625710 NA other upstream 1332076 42250731 ~ 42251571 (+)
G1624524 NA other upstream 1546529 42036328 ~ 42037118 (+)
G1624565 LOC100846954 other upstream 1547703 42035353 ~ 42035944 (+)
tmem260 LOC106593970 other upstream 1554141 41988770 ~ 42029506 (+)
G1628073 LOC106610840 other downstream 826812 44414322 ~ 44448672 (+)
G1628486 NA other downstream 1095852 44683362 ~ 44748925 (+)
G1628488 NA other downstream 1100872 44688382 ~ 44747446 (+)
G1628550 NA other downstream 1242412 44829922 ~ 44886234 (+)

Expression


Co-expression Network