LOC110497936 (LOC106589077)


Basic Information

Item Value
gene id LOC110497936
gene name LOC106589077
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 43628125 ~ 43635200 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574415.2
GAAACACCCTTCATTAAGAAACAGAGTGCTCTGTGACTGATGTCCTGCCATATTTTCATAACAATATTGGCGCCACCAAAAGCTTTCTGTATAAGCAAAGCGCAAGAGTTGCATCGACACAACGCCAAGAGAAAACACATTTTCAGCAGGATCAAGATGGAAGGTCAACGTAAAGACAGAAGGATGAATAAACTGTGGATATTGACGTTACTGTTATGCGTTTGACCTGCATCTCACTGTCTGGATAACAAGGTTTCTCAACTTCTGCGCGTTTTGGATTGCGGAGCTCGGTCTCGCCCAAAAAGGTTTTGAAGAAGGATTTATTTATTTCTAATTTCCAAACTTCATATTTCATCATCACTGCTTGGAATAAGAGCCCTCTGTGGAGAACAGGTTATTTTTCAAAGGATACGAACCGATCTGTGGAAAAGAATGGCAACTTGGTTTACCTTTATCATCGCAATTATTATAACGATTTTTAAGCAGGTTCTGGGATCTGGTGTATTCGAGCTTGATCTTCATCAGTTTCAGAATAATAGAGGTTTGCTGGCGAACGGCGTAGCTTGTAGTCCGGTGTGTAGGACTTTTTTCCGAGTTTGCTTGAAGAACTACCAGACCGTAGTGTCACCAGGTGACTGCTACTTCGGCAGTGTCGTTACACCTGTACTAGGCACCAACTCATTCAGCGTCATGGAGGACGGCACGTTCACTAAACCTATTCGCCTGCCACTCACCCACTTCGCATGGCCGGGCTCGTTTTCTCTAATCATTGAAGCATGGTTTTCTCCTTCAGCGGATCTACCTGAAGCAGATACAAACAACCCTGCTTTATTGATTAGTTATTTTGCCATTCAAAGAAAGTTGGAAGTAGGAGATGAGTGGTCCCAGGATGTGCAAAGTGTGAGGCAGACGGAGTTAAGGTACTCATACCGGTTCATCTGCCATGCAAATTACTACGGGGACAGTTGTTCAAAAATATGCGCTCCAAGAGACGACCGTTTTGGCCACTACACCTGCAACCCTGACGGGCAAATATCATGTCTACCGGGCTGGAAGGGACAATACTGCGAAGAACCAATTTGCCTTGAAGGGTGCAGCAAATTAAATGGAAATTGCTCAAGGCCAGGACAGTGTGTATGCAGAGAGGGCTGGCAGGGCACCTTCTGTAATGAGTGTAAAAGGCATCCATCCTGCAAACATGGCACTTGTCAGCAGCCCTGGCAGTGCACCTGCAAAGAGGGCTGGGGAGGCCTCCTCTGTGACCAAGATCTGAACTATTGCACCCATCACAAGCCGTGTCGTAATGGGGCCACTTGTATGAACACAGGCCAGGGGAGCTACACCTGTACCTGCCAGCCGGGCTTCACAGGGGATAAGTGTGACAGCGAGGTCAGGGAGTGCGACAGCCAGCCCTGTCGGAACGGAGGCCAGTGCTTGGACCTTGAGAACGGCTATAGGTGTGCATGTCCACAGGGGTTCGAGGGGACGCACTGCGAGCACAGAATGCTGACTTGTGCCGATTCACCCTGCTTCCACGGGAAGTGCAGAGAAAGGGACAACGGGCGGAGCTACATGTGCGAGTGCCCAGGGGGCTTCACTGGACTCAACTGTGAAAAGAAAGTGGACAAATGCACCTCCTTGCCCTGTACAAATGGTGGACGTTGTGTTATCCACGGCACCACACGTTGGTGCAGCTGCCGCTCAGGCTTCACCGGCCCACGCTGCGAGATCAACATCAACGAGTGTTCCATGAACCCCTGCGCCAACGGAGCCAGCTGCATGGACCGCATCAACGACTACACCTGCATCTGCCCCCTGGGCTACACCGGCCGCAACTGTGACAAGCCCACTGACAGCTGTGCCTCCAAACCCTGCCTGAACGGTGGGACCTGCACCAACGGGGCCAAAGGCCAGCCTGCTGACTGCACCTGCTCAGCCCACTTCAGCGGCACCCAGTGCCAATACTACGATGTGCCTTTACTCATcccccccagccccagccccagccctgtcAGAGAGACCCAAGACAGGCTCAACTGGGCAGCCATCTGTCTGGGTGTGGGCCTGGTGGTGCTCCTGGTGCTGATCTGCATGGTGGCCATGGTCCTGCGCCACATCCAGCAGCAGAGGAAGAGGGAGCAGGACTCAGAGACCATGAACAACCTTTCACATTTCCAGAAGGAAAACCTCATTTCTGACCTGCAGCTGAAGAACACCAACAAAAAGGTGGTCCTGGACCTGGAGGTGGATTGTCTCAGGGAGAAGTCCCAAAACCACAAACACATCAACTACCACTTGGACAACAAAACCTTCAAGGAGTACAAGGATGAGCCGTCGCAAGAGGATAAAGACGAGAACTGTAAAAAGACGATAGAGGAGAAAATGCCGTTGAGTAGAAAGTACAGCGAAAGGCCAGAGTGTAGGATAGCAACGATATGTTCTCCAAGAGATTCCATATACCAGTCTGTGTTTGTGATAGCAGAGGAGAAAAATGAATGCGTCATAGCAACTGAGGTATAATACATGGAGGGTATCAGACATTCTGAAGAATGGATATCTTCTGGACTGTTTACAGTGTAGAAACAGACAGGGATTTATTTAACTGTGAATTGCTGCTCTTGAAAACTTGATAACTGGACCGAGCCGGTGTGCTCTATGAATGCAATAGGACTCAAACTACAGAACTTTGTTAGAATGTAAGGACTGAACAGACTGTGAGAAATAATACACAACTTGGACTTTTGGATGTTTCACCGTCAGGGTGTACTGACAGATTCAGCCCCTTGACAGGACTTGTCTGACCATATCCATGGAAAACAGGCCTATGTGTTTATGCCACCTTGCCCATCAGCAGGACGAGAGGGCTCTGTCTGGAGATACTCCACCTTATTTTGATAATCAGCAATCagcaaccaaccaatcaacttACTGCCAACAAGACTGTGGAAGAAGCCAGCTACTTCCATTTACCCTGGTGATGTGCTACAGTATGCAAAAAAGGAGACTTTGTTTAATAAACTTTCAAGGAGATTAAAAAAATACTAGAAACGGTTCATTTTTTGAGAATATTTGAGACCCAGGCCTATGTCAATtttgtaaattattattattattattattatttacataaAAAATGTTAATAAAGAATGTATGCATCCCGAATCACAGAGCCTTAAGTATGGGTTATAGAGCTTGATACCCTGCTTCTTCTTGGATCCATTGCACAACTAAAACTGAAGGGAAAATACTTTTAAGAGAAAACAACTGATGCAATAAATGACGTAGTGCCAGGGGGATTCAAGAAGAAGCATTTTTACTTCTTATTATGCAACATTGCCCAGAAAtgaaaacaaagaaaaacaaaaGTGACTATCATACCAAGGACGCCTATAATTAAAATTGACATTACTGAACcaataatgtttttttaaagatTAGTATTTCACTAGTTATTTAAATATTATGAAGCACTGGTCTTTCTATTATGTTTTATACGattattttgtatataatgtatatttaTAAATTTAGAAGTCGGTGTACAACGGTTTTCAATTTGATGCCCAAAAAGTTGAATTtattttaatgtttaatgttGTTGTGATTGTTGTTTTTTAAACAATGAAAACATATCTGGTACACTGTTTGTTGGTTTCATGTTGAGTAGAAGTGGTCAACTATAGAACTGTCAATTTGCCTAGATATTGGAATGATTAAGAACCTTCCGTTGAAGTCCATCCCCTGTTGTGGAAATGGATTCATTGTCTAGATGATGTATGACCTTGTAGCAGTTCTAGTAATCACATGCATACGGTGGTGACTGGTGagtcaatgtgatgtgaaatcaATGTGCACGCAATCATTTAGTGGACAGTATTGTATTTGACAGCCGTGTGAGAAATATGGACAAaaggtatatataaaaaaaattgaataaaaATGTTGAAGTACA
>XM_021574416.2
GAAACACCCTTCATTAAGAAACAGAGTGCTCTGTGACTGATGTCCTGCCATATTTTCATAACAATATTGGCGCCACCAAAAGCTTTCTGTATAAGCAAAGCGCAAGAGTTGCATCGACACAACGCCAAGAGAAAACACATTTTCAGCAGGATCAAGATGGAAGGTCAACGTAAAGACAGAAGGATGAATAAACTGTGGATATTGACGTTACTGTTATGCGTTTGACCTGCATCTCACTGTCTGGATAACAAGGTTTCTCAACTTCTGCGCGTTTTGGATTGCGGAGCTCGGTCTCGCCCAAAAAGGTTTTGAAGAAGGATTTATTTATTTCTAATTTCCAAACTTCATATTTCATCATCACTGCTTGGAATAAGAGCCCTCTGTGGAGAACAGGTTATTTTTCAAAGGATACGAACCGATCTGTGGAAAAGAATGGCAACTTGGTTTACCTTTATCATCGCAATTATTATAACGATTTTTAAGCAGGTTCTGGGATCTGGTGTATTCGAGCTTGATCTTCATCAGTTTCAGAATAATAGAGGTTTGCTGGCGAACGGCGTAGCTTGTAGTCCGGTGTGTAGGACTTTTTTCCGAGTTTGCTTGAAGAACTACCAGACCGTAGTGTCACCAGGTGACTGCTACTTCGGCAGTGTCGTTACACCTGTACTAGGCACCAACTCATTCAGCGTCATGGAGGACGGCACGTTCACTAAACCTATTCGCCTGCCACTCACCCACTTCGCATGGCCGGGCTCGTTTTCTCTAATCATTGAAGCATGGTTTTCTCCTTCAGCGGATCTACCTGAAGATACAAACAACCCTGCTTTATTGATTAGTTATTTTGCCATTCAAAGAAAGTTGGAAGTAGGAGATGAGTGGTCCCAGGATGTGCAAAGTGTGAGGCAGACGGAGTTAAGGTACTCATACCGGTTCATCTGCCATGCAAATTACTACGGGGACAGTTGTTCAAAAATATGCGCTCCAAGAGACGACCGTTTTGGCCACTACACCTGCAACCCTGACGGGCAAATATCATGTCTACCGGGCTGGAAGGGACAATACTGCGAAGAACCAATTTGCCTTGAAGGGTGCAGCAAATTAAATGGAAATTGCTCAAGGCCAGGACAGTGTGTATGCAGAGAGGGCTGGCAGGGCACCTTCTGTAATGAGTGTAAAAGGCATCCATCCTGCAAACATGGCACTTGTCAGCAGCCCTGGCAGTGCACCTGCAAAGAGGGCTGGGGAGGCCTCCTCTGTGACCAAGATCTGAACTATTGCACCCATCACAAGCCGTGTCGTAATGGGGCCACTTGTATGAACACAGGCCAGGGGAGCTACACCTGTACCTGCCAGCCGGGCTTCACAGGGGATAAGTGTGACAGCGAGGTCAGGGAGTGCGACAGCCAGCCCTGTCGGAACGGAGGCCAGTGCTTGGACCTTGAGAACGGCTATAGGTGTGCATGTCCACAGGGGTTCGAGGGGACGCACTGCGAGCACAGAATGCTGACTTGTGCCGATTCACCCTGCTTCCACGGGAAGTGCAGAGAAAGGGACAACGGGCGGAGCTACATGTGCGAGTGCCCAGGGGGCTTCACTGGACTCAACTGTGAAAAGAAAGTGGACAAATGCACCTCCTTGCCCTGTACAAATGGTGGACGTTGTGTTATCCACGGCACCACACGTTGGTGCAGCTGCCGCTCAGGCTTCACCGGCCCACGCTGCGAGATCAACATCAACGAGTGTTCCATGAACCCCTGCGCCAACGGAGCCAGCTGCATGGACCGCATCAACGACTACACCTGCATCTGCCCCCTGGGCTACACCGGCCGCAACTGTGACAAGCCCACTGACAGCTGTGCCTCCAAACCCTGCCTGAACGGTGGGACCTGCACCAACGGGGCCAAAGGCCAGCCTGCTGACTGCACCTGCTCAGCCCACTTCAGCGGCACCCAGTGCCAATACTACGATGTGCCTTTACTCATcccccccagccccagccccagccctgtcAGAGAGACCCAAGACAGGCTCAACTGGGCAGCCATCTGTCTGGGTGTGGGCCTGGTGGTGCTCCTGGTGCTGATCTGCATGGTGGCCATGGTCCTGCGCCACATCCAGCAGCAGAGGAAGAGGGAGCAGGACTCAGAGACCATGAACAACCTTTCACATTTCCAGAAGGAAAACCTCATTTCTGACCTGCAGCTGAAGAACACCAACAAAAAGGTGGTCCTGGACCTGGAGGTGGATTGTCTCAGGGAGAAGTCCCAAAACCACAAACACATCAACTACCACTTGGACAACAAAACCTTCAAGGAGTACAAGGATGAGCCGTCGCAAGAGGATAAAGACGAGAACTGTAAAAAGACGATAGAGGAGAAAATGCCGTTGAGTAGAAAGTACAGCGAAAGGCCAGAGTGTAGGATAGCAACGATATGTTCTCCAAGAGATTCCATATACCAGTCTGTGTTTGTGATAGCAGAGGAGAAAAATGAATGCGTCATAGCAACTGAGGTATAATACATGGAGGGTATCAGACATTCTGAAGAATGGATATCTTCTGGACTGTTTACAGTGTAGAAACAGACAGGGATTTATTTAACTGTGAATTGCTGCTCTTGAAAACTTGATAACTGGACCGAGCCGGTGTGCTCTATGAATGCAATAGGACTCAAACTACAGAACTTTGTTAGAATGTAAGGACTGAACAGACTGTGAGAAATAATACACAACTTGGACTTTTGGATGTTTCACCGTCAGGGTGTACTGACAGATTCAGCCCCTTGACAGGACTTGTCTGACCATATCCATGGAAAACAGGCCTATGTGTTTATGCCACCTTGCCCATCAGCAGGACGAGAGGGCTCTGTCTGGAGATACTCCACCTTATTTTGATAATCAGCAATCagcaaccaaccaatcaacttACTGCCAACAAGACTGTGGAAGAAGCCAGCTACTTCCATTTACCCTGGTGATGTGCTACAGTATGCAAAAAAGGAGACTTTGTTTAATAAACTTTCAAGGAGATTAAAAAAATACTAGAAACGGTTCATTTTTTGAGAATATTTGAGACCCAGGCCTATGTCAATtttgtaaattattattattattattattatttacataaAAAATGTTAATAAAGAATGTATGCATCCCGAATCACAGAGCCTTAAGTATGGGTTATAGAGCTTGATACCCTGCTTCTTCTTGGATCCATTGCACAACTAAAACTGAAGGGAAAATACTTTTAAGAGAAAACAACTGATGCAATAAATGACGTAGTGCCAGGGGGATTCAAGAAGAAGCATTTTTACTTCTTATTATGCAACATTGCCCAGAAAtgaaaacaaagaaaaacaaaaGTGACTATCATACCAAGGACGCCTATAATTAAAATTGACATTACTGAACcaataatgtttttttaaagatTAGTATTTCACTAGTTATTTAAATATTATGAAGCACTGGTCTTTCTATTATGTTTTATACGattattttgtatataatgtatatttaTAAATTTAGAAGTCGGTGTACAACGGTTTTCAATTTGATGCCCAAAAAGTTGAATTtattttaatgtttaatgttGTTGTGATTGTTGTTTTTTAAACAATGAAAACATATCTGGTACACTGTTTGTTGGTTTCATGTTGAGTAGAAGTGGTCAACTATAGAACTGTCAATTTGCCTAGATATTGGAATGATTAAGAACCTTCCGTTGAAGTCCATCCCCTGTTGTGGAAATGGATTCATTGTCTAGATGATGTATGACCTTGTAGCAGTTCTAGTAATCACATGCATACGGTGGTGACTGGTGagtcaatgtgatgtgaaatcaATGTGCACGCAATCATTTAGTGGACAGTATTGTATTTGACAGCCGTGTGAGAAATATGGACAAaaggtatatataaaaaaaattgaataaaaATGTTGAAGTACA
>TU1862032
AGTTGAATTtattttaatgtttaatgttGTTGTGATTGTTGTTTTTTAAACAATGAAAACATATCTGGTACACTGTTTGTTGGTTTCATGTTGAGTAGAAGTGGTCAACTATAGAACTGTCAATTTGCCTAGATATTGGAATGATTAAGAACCTTCCGTTGAAGTCCATCCCCTGTTGTGGAAATGGATTCATTGTCTAGATGATGTATGACCTTGTAGCAGTTCTAGTAATCACATGCATACGGTGGTGACTGGTGagtcaatgtgatgtgaaatcaATGTGCACGCAATCATTTAGTGGACAGTATTGTATTTGACAGCCGTGTGAGAAATATGGACAAaaggtatatataaaaaaaattgaataaaaATGTTGAAGTACA
>TU1862033
AGTTGAATTtattttaatgtttaatgttGTTGTGATTGTTGTTTTTTAAACAATGAAAACATATCTGGTACACTGTTTGTTGGTTTCATGTTGAGTAGAAGTGGTCAACTATAGAACTGTCAATTTGCCTAGATATTGGAATGATTAAGAACCTTCCGTTGAAGTCCATCCCCTGTTGTGGAAATGGATTCATTGTCTAGATGATGTATGACCTTGTAGCAGTTCTAGTAATCACATGCATACGGTGGTGACTGGTGagtcaatgtgatgtgaaatcaATGTGCACGCAATCATTTAGTGGACAGTATTGTATTTGACAGCCGTGTGAGAAATATGGACAAaaggtatatataaaaaaaattgaataaaaATGTTGAAGTACAGTACACAGAATGGTCAatatttgtgtttgtttttcaaAAAGAACATCAATCTCATCCTTATGCCCCTTGTTGTCAAGCATTCAAGTTGCTTTAAACTGGCTTAACTCCATTTGAGTCAATGAGCAGTCATTTTGACTAATTTGCCTTAACAgtctaataaatacatttaatatacGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574415.2 False 3952 mRNA 0.45 11 43628125 43635023
XM_021574416.2 False 3949 mRNA 0.45 11 43628125 43635023
TU1862032 False 383 lncRNA 0.34 1 43634641 43635023
TU1862033 True 560 lncRNA 0.34 1 43634641 43635200

Neighbor

gene id symbol gene type direction distance location
LOC110498579 LOC106599786 coding upstream 40615 43583647 ~ 43587510 (+)
LOC110497933 LOC106589343 coding upstream 137459 43483464 ~ 43490666 (+)
LOC110497932 LOC106611063 coding upstream 153457 43448731 ~ 43474668 (+)
LOC110498578 LOC106589566 coding upstream 182376 43443333 ~ 43445749 (+)
LOC110497931 LOC106589425 coding upstream 188097 43279273 ~ 43440028 (+)
LOC110498580 LOC106599766 coding downstream 3456 43638479 ~ 43643478 (+)
LOC110497938 LOC106588908 coding downstream 49235 43684258 ~ 43694931 (+)
LOC110498362 LOC106588971 coding downstream 60199 43695222 ~ 43735408 (+)
LOC110497947 LOC106588052 coding downstream 292049 43927072 ~ 43931372 (+)
LOC110497948 NA coding downstream 309602 43944625 ~ 43946674 (+)
G1627212 NA non-coding upstream 31806 43595954 ~ 43596319 (+)
G1627157 NA non-coding upstream 91863 43536052 ~ 43536262 (+)
G1627148 NA non-coding upstream 97405 43530509 ~ 43530720 (+)
G1626893 NA non-coding upstream 122321 43505582 ~ 43505804 (+)
G1626892 NA non-coding upstream 123707 43503998 ~ 43504418 (+)
G1627353 NA non-coding downstream 156675 43791698 ~ 43792446 (+)
G1627367 NA non-coding downstream 177848 43812871 ~ 43813077 (+)
G1627319 NA non-coding downstream 179570 43814593 ~ 43816501 (+)
G1627368 NA non-coding downstream 182432 43817455 ~ 43817909 (+)
G1627370 NA non-coding downstream 183894 43818917 ~ 43819117 (+)
G1625710 NA other upstream 1376554 42250731 ~ 42251571 (+)
G1624524 NA other upstream 1591007 42036328 ~ 42037118 (+)
G1624565 LOC100846954 other upstream 1592181 42035353 ~ 42035944 (+)
tmem260 LOC106593970 other upstream 1598619 41988770 ~ 42029506 (+)
G1628073 LOC106610840 other downstream 779299 44414322 ~ 44448672 (+)
G1628486 NA other downstream 1048339 44683362 ~ 44748925 (+)
G1628488 NA other downstream 1053359 44688382 ~ 44747446 (+)
G1628550 NA other downstream 1194899 44829922 ~ 44886234 (+)

Expression


Co-expression Network