LOC110498362 (LOC106588971)


Basic Information

Item Value
gene id LOC110498362
gene name LOC106588971
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 43695222 ~ 43735408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954885.1
CTGTGGATGCATTGGCCAACGATTTTACCCCGAGCCCTGATTGGTTGCTTTTGCGTAGGTTTCCCTCAGAACTGCAAGACGCTGATATTGCATTACAGTGTAGCAAAATGGCGGCTGTCATTCAGAACCCACTAAAAGCGTTGGGTGACCAGTTCTACAAAGAGGCCATTGAGCAGTGCCGCAGCTACAATGCCCGCCTGTGTGCCGAGCGCAGCGTGCGCCTGCCCTTCCTGGACTCGCAGACTGGTGTGGCACAGAACAACTGCTACATCTGGATGGAGCGCCACCACCGCAGCCCTGggGTGGCTGCAGGTCAGATGTATACATACCCTGCCCGCTGCTGGAGGAAGAAGAGACGGCTGCACGCCTCCATGGACCCTCGTCTACGCCTCTGTGGCCTACAGCTAGATGGAGGACTCCCAGGCAAGGATACGCTTCCCACACAGGACACCACACTGGAGGCTCTTCTTAGAGGGGAGGGCCTAGACCAGAGGACCAACTCTAAGGATGAGGAGAGTCTCCTAGAAATCCAGAGGGTGTTGGAGGCTGACGCAGCTGAAGGTGCATACAATGACGATGACTATGAAGtggacccccccaaaaaaagacacAGAGGAAAAGGCAGAGGTCGGGGTTCAGGCCGCAGGAGGACAGAGATGGAAGACCAGGACAAGCCATACGGCTGTGACATCTGTGGGAAGCGCTACAAAAACCGTACGGGGCTGAGTTACCACTACACCCATTCCCACCTGGCAGAGGAGAGGGGGTCCGAGTCCTCCCAGTCACCCTCCACACAACGCTCCGACAGACACAAACGTCAGAAGGGCCCAGGTGGGTctgccagtaccaataactacTGTAACTTGTGCCGGTGCACACCAGGCTCCAACAGGGGTAAATCTGGGGAGAGGGTACCCTGCTCAGTCTGCCGATGCTCCACTGGATGCCCAGAAGAGAAGGAGGACAGCAGGCCGTTTGCCAGGGCAGAAGAACTGTTTGGCACCACCTCAGAGAGCGACACGTCCACGTTTCACGGCTTTGAGGACGATGAGCTTGAAGAGCCCTCGTCAAACGGCAAGGGGACATCCAACCGATACAGATAGAGAAGAACTTACTAGGTTTAAAGACTATTTTTAATATGGATAACCTCTAGCAAAAGTCTGCTGcttctttttaaatgtttttgttgttgttgtggaaagCACAAGTGATTATTTCAGGAGAGAAATGCAAGAAGTGTTATTTTATTATCTACTGAACCTTGTTTAATAATTTATGAACATGTTTTTTATATTAACTTTGAAAGCAACAAGAAACAGTGTTTCTTGACAAGTGACTTGCTCTTCATGTGAAACTGAAGGAAGAATCACTTcttggatttttttccccctggaACAGAAAAGGCAATTATGTTATAAACAAACACTGGAACGTGGATATCATTGTATTGCTCTTTTTGGGATGATTTGCCAGTGAAAATTAAATTCAATAATTTATCATGAAATTAAACAACTTAAATGATAAACTTGAGTTTGGATGGGGAATGAATGTCAACACCAACCCATCCCTCGGCTTGTTGATGTCACTGGAATCACCAGGCAGTTTGGAAAGAGGAGCTTTTAGATGACACCTCCACTGCTTCCTTCTCTGGATTATAATAATGTGGCAATGAAGGAGTGGAGGATTGACGTGTGTGGATGAAGCAGAGGGCTAGGAAGGCATAACAGAAGCAGGGCATGGCTAGCTGAAAGGCGTACCATGGAATGAAGATCCAGAGGGCTGTGAAGCCAGTGAGGGGTGAGGTTCAggaccctcaacactgggcctCTACATACCCCTCCACTGGACTCAAAAAATCTATCTGGCTGACAGTCAGACAACATATAGCCatccagccagcctgccagctacCACACAACCCCATACTCTCTGACATTTTCTCTTTGAATTTCCCCCCTGAGAATATGTATTGATTATCCCAGACGGAACGTAGAAAACGAGTGGCTCCACATACAGTGAGTCTCTCCTGCACTGCAATGCACTGTGCTGTACGGTACCTATCCTGTAATAAGGAAAGGTCAGGGCTGTGGGTTCTCTGCCCACAGAGTGTGTTTGAACCCTGTGTGTTGCTACTCTACGGCTGTGTCCACCATGCCCATGGGATCCAATATGACACTGAGACGTCATTAACTTCATCACTGTGCCAGCCTGCGACCCAGTTGGGAACCAGCTCTGACGGCCATAGTGACCCAGTGACCTGATTGAACCACTCTGACCTCTAACTTCTGACCCCTGCCATAGCGACGGTGCTGAACTCCCTCCGTCACTAATACAACAAAACCTCTGGACTACTTAGACatgctcttttctcctctctcttctcttgctctctttaaTGTCAAACTAATGTAGAGTTTGCTTTAATCCCATCCATCCTCATGTTTCAGAACTGTGCTATATTCCTTCGTTTTGAACAGAATATTGACAGATTGGGTTCTTAGTGTCATTTAAGTGTATCTGCTGATTATTCTGATGTCTTCTGTTTGTTCTGGCTTTGTTGATATGTCTTTCTACAAtacctactattactactactacagtactactactcaGGCATATGATGTGTACTGCTGTTGATTGTTCTTGTGTCTGCATAATGATGCAGTCAGTATCAGGCCATTCTCCCCTGCCTGCCTCATGATATATTCTATTGGTCAAAAGGATATAAATAACTGATGAGGGTATTGACAAGGAATCAGAAAGggcaataaaataaaatgaatgcCACAGAGTTTAGTCATCACACTAACACATATCTATTTAGCCCAGCTTTAACAAACCATTGCAATAACAAAACATTCTGAACTCTGCCATTCTGAGTTCTTGGGCACATTACTCAAATTTCTCTGATTCCTCAAACACTTTTGTCCAGAATCACTTAttggtaactgccaaaataaagaaaatgctTCAcataaatgagggatacaaagtatattgaaagcaggtgcttccacacaggtgtggttcctgagttaattaagcaattaaaacaTCCCATCATGCATAGAGtgatgtataaaaatgcccagttgcccagatttgttttgctaccatggctagaagaagtgattttgaaagaggggtctcaaaagAGCATAGCTAGGGGGTTAAAAGTGTTtgggtgtgtgtccatgtgtgcatGCTTGCACTTTTTAATGGATGGGGATAAGCAATTGAACACTTattggagattctggagtggcgcctgagacagcgttttccaccaccatcaacaaaataccaaattatgaaatttctcatggaagaatggtctTGCATCCCCCCAAtatagttccagacacttgtagaatctataatCTATTTGATCTGTTCTGGCTGTTAGTGGTgtccaacgccctattaagacactttatgttggtgtttacTTTATTTTGCCAGTTACCTATACATGCCATGTGTACATAATGCGAGGAGAGTTATGTACAATTGCAGAAGAGCTGTAAAACAATGTTACGTGACATTTTGATTTGAGTGCTATATTAGGCATAGATACTTTATGAAGTGTAAAGGGTGCTTGGGATATTGAGCCAAAAACATGTTGATGTATTGTATATCTGTCACACAAAGTCATGTGTCCTTCCATGTGGTCATATGAGCAAGTTGTTAGTTGTTCCATTAGCTAAAATAACCTGAAAATGCAAGATAGCATTTAAATAGAAAGGGATGTCTTAAATGTTGGCACATTAGACACTCACTTACAATACACATTCTTAACACTGAATTCCCTCAGGGACACCTTCATCCACAGTTTCTAGGTCTTTTTTTATGGATAATTATTTTGGTAATCAGCAACAACCTCCCTATCAATTACATGGTCACCAGTCGTTTTGGAATGACAACCCGGTactgatgtaggatcttaatttgacctttattgtCGCAGCAAAATAATTCTACAGCAACAGAATTTTAATGTTTAGTCCATAATTTTGCCTGATCGGTGGTCAGGCTATTAGCTAGTCAAAatgaggctacatgaaaagtgttatattgttaatataactgtgttaGTGCAGGTTTTCAATGAATTAATCTGCAAATTCTCAGcagcaaaagagtgatcaaattaaagTCTTACATCTGTATTAACCCGCCTGGAGTCAGCGGAGAGTGTGTGGTTTATGGTTAACGTTTTCTTTCACTGGTGACTTCCTCTAACAAACGGGTCTAGCATGGTGCACTTCCAAACAACACTCATTAAAGTCAGTGATGTCTGTATAGAAACAAGTGTCATCACCACCAATCATATAATCTTGCATAGCCTGTATACCTCGTCAAAGACGGCAATAACCCAAGAGCTCTCAGCAAGCCTTCCTGAGTTAGCGGGGAGTGCAGGGGTTGGAATGGAGCCAAGAACAGATGAAATGGACTTGACCGGTCATTTTATCTTCAACTGTAAATAACTAAAATCGAGAGAATGAAGTCTTTGTTTGTTAAACTATTTTTATTGTaatgaaagaaaataaagaaTGAGACTCCGCCCA
>XM_036954884.1
AATGTCCCATTTGGAACAAGTAGAGAGAGCATATCTgctcaatctgattgggtgggcccAGGCCCACCTGTGCCTACGCTGCTGGACAGAAGACCCATCTGCCCCTCAGTAGAAGTACCCTGGCACCCCCATGGGCCCTACAGGATCAAGGGAGTGTGCTCCTCGCCTATACCCTCCATTTACGTTGGGTGACCAGTTCTACAAAGAGGCCATTGAGCAGTGCCGCAGCTACAATGCCCGCCTGTGTGCCGAGCGCAGCGTGCGCCTGCCCTTCCTGGACTCGCAGACTGGTGTGGCACAGAACAACTGCTACATCTGGATGGAGCGCCACCACCGCAGCCCTGggGTGGCTGCAGGTCAGATGTATACATACCCTGCCCGCTGCTGGAGGAAGAAGAGACGGCTGCACGCCTCCATGGACCCTCGTCTACGCCTCTGTGGCCTACAGCTAGATGGAGGACTCCCAGGCAAGGATACGCTTCCCACACAGGACACCACACTGGAGGCTCTTCTTAGAGGGGAGGGCCTAGACCAGAGGACCAACTCTAAGGATGAGGAGAGTCTCCTAGAAATCCAGAGGGTGTTGGAGGCTGACGCAGCTGAAGGTGCATACAATGACGATGACTATGAAGtggacccccccaaaaaaagacacAGAGGAAAAGGCAGAGGTCGGGGTTCAGGCCGCAGGAGGACAGAGATGGAAGACCAGGACAAGCCATACGGCTGTGACATCTGTGGGAAGCGCTACAAAAACCGTACGGGGCTGAGTTACCACTACACCCATTCCCACCTGGCAGAGGAGAGGGGGTCCGAGTCCTCCCAGTCACCCTCCACACAACGCTCCGACAGACACAAACGTCAGAAGGGCCCAGGTGGGTctgccagtaccaataactacTGTAACTTGTGCCGGTGCACACCAGGCTCCAACAGGGGTAAATCTGGGGAGAGGGTACCCTGCTCAGTCTGCCGATGCTCCACTGGATGCCCAGAAGAGAAGGAGGACAGCAGGCCGTTTGCCAGGGCAGAAGAACTGTTTGGCACCACCTCAGAGAGCGACACGTCCACGTTTCACGGCTTTGAGGACGATGAGCTTGAAGAGCCCTCGTCAAACGGCAAGGGGACATCCAACCGATACAGATAGAGAAGAACTTACTAGGTTTAAAGACTATTTTTAATATGGATAACCTCTAGCAAAAGTCTGCTGcttctttttaaatgtttttgttgttgttgtggaaagCACAAGTGATTATTTCAGGAGAGAAATGCAAGAAGTGTTATTTTATTATCTACTGAACCTTGTTTAATAATTTATGAACATGTTTTTTATATTAACTTTGAAAGCAACAAGAAACAGTGTTTCTTGACAAGTGACTTGCTCTTCATGTGAAACTGAAGGAAGAATCACTTcttggatttttttccccctggaACAGAAAAGGCAATTATGTTATAAACAAACACTGGAACGTGGATATCATTGTATTGCTCTTTTTGGGATGATTTGCCAGTGAAAATTAAATTCAATAATTTATCATGAAATTAAACAACTTAAATGATAAACTTGAGTTTGGATGGGGAATGAATGTCAACACCAACCCATCCCTCGGCTTGTTGATGTCACTGGAATCACCAGGCAGTTTGGAAAGAGGAGCTTTTAGATGACACCTCCACTGCTTCCTTCTCTGGATTATAATAATGTGGCAATGAAGGAGTGGAGGATTGACGTGTGTGGATGAAGCAGAGGGCTAGGAAGGCATAACAGAAGCAGGGCATGGCTAGCTGAAAGGCGTACCATGGAATGAAGATCCAGAGGGCTGTGAAGCCAGTGAGGGGTGAGGTTCAggaccctcaacactgggcctCTACATACCCCTCCACTGGACTCAAAAAATCTATCTGGCTGACAGTCAGACAACATATAGCCatccagccagcctgccagctacCACACAACCCCATACTCTCTGACATTTTCTCTTTGAATTTCCCCCCTGAGAATATGTATTGATTATCCCAGACGGAACGTAGAAAACGAGTGGCTCCACATACAGTGAGTCTCTCCTGCACTGCAATGCACTGTGCTGTACGGTACCTATCCTGTAATAAGGAAAGGTCAGGGCTGTGGGTTCTCTGCCCACAGAGTGTGTTTGAACCCTGTGTGTTGCTACTCTACGGCTGTGTCCACCATGCCCATGGGATCCAATATGACACTGAGACGTCATTAACTTCATCACTGTGCCAGCCTGCGACCCAGTTGGGAACCAGCTCTGACGGCCATAGTGACCCAGTGACCTGATTGAACCACTCTGACCTCTAACTTCTGACCCCTGCCATAGCGACGGTGCTGAACTCCCTCCGTCACTAATACAACAAAACCTCTGGACTACTTAGACatgctcttttctcctctctcttctcttgctctctttaaTGTCAAACTAATGTAGAGTTTGCTTTAATCCCATCCATCCTCATGTTTCAGAACTGTGCTATATTCCTTCGTTTTGAACAGAATATTGACAGATTGGGTTCTTAGTGTCATTTAAGTGTATCTGCTGATTATTCTGATGTCTTCTGTTTGTTCTGGCTTTGTTGATATGTCTTTCTACAAtacctactattactactactacagtactactactcaGGCATATGATGTGTACTGCTGTTGATTGTTCTTGTGTCTGCATAATGATGCAGTCAGTATCAGGCCATTCTCCCCTGCCTGCCTCATGATATATTCTATTGGTCAAAAGGATATAAATAACTGATGAGGGTATTGACAAGGAATCAGAAAGggcaataaaataaaatgaatgcCACAGAGTTTAGTCATCACACTAACACATATCTATTTAGCCCAGCTTTAACAAACCATTGCAATAACAAAACATTCTGAACTCTGCCATTCTGAGTTCTTGGGCACATTACTCAAATTTCTCTGATTCCTCAAACACTTTTGTCCAGAATCACTTAttggtaactgccaaaataaagaaaatgctTCAcataaatgagggatacaaagtatattgaaagcaggtgcttccacacaggtgtggttcctgagttaattaagcaattaaaacaTCCCATCATGCATAGAGtgatgtataaaaatgcccagttgcccagatttgttttgctaccatggctagaagaagtgattttgaaagaggggtctcaaaagAGCATAGCTAGGGGGTTAAAAGTGTTtgggtgtgtgtccatgtgtgcatGCTTGCACTTTTTAATGGATGGGGATAAGCAATTGAACACTTattggagattctggagtggcgcctgagacagcgttttccaccaccatcaacaaaataccaaattatgaaatttctcatggaagaatggtctTGCATCCCCCCAAtatagttccagacacttgtagaatctataatCTATTTGATCTGTTCTGGCTGTTAGTGGTgtccaacgccctattaagacactttatgttggtgtttacTTTATTTTGCCAGTTACCTATACATGCCATGTGTACATAATGCGAGGAGAGTTATGTACAATTGCAGAAGAGCTGTAAAACAATGTTACGTGACATTTTGATTTGAGTGCTATATTAGGCATAGATACTTTATGAAGTGTAAAGGGTGCTTGGGATATTGAGCCAAAAACATGTTGATGTATTGTATATCTGTCACACAAAGTCATGTGTCCTTCCATGTGGTCATATGAGCAAGTTGTTAGTTGTTCCATTAGCTAAAATAACCTGAAAATGCAAGATAGCATTTAAATAGAAAGGGATGTCTTAAATGTTGGCACATTAGACACTCACTTACAATACACATTCTTAACACTGAATTCCCTCAGGGACACCTTCATCCACAGTTTCTAGGTCTTTTTTTATGGATAATTATTTTGGTAATCAGCAACAACCTCCCTATCAATTACATGGTCACCAGTCGTTTTGGAATGACAACCCGGTactgatgtaggatcttaatttgacctttattgtCGCAGCAAAATAATTCTACAGCAACAGAATTTTAATGTTTAGTCCATAATTTTGCCTGATCGGTGGTCAGGCTATTAGCTAGTCAAAatgaggctacatgaaaagtgttatattgttaatataactgtgttaGTGCAGGTTTTCAATGAATTAATCTGCAAATTCTCAGcagcaaaagagtgatcaaattaaagTCTTACATCTGTATTAACCCGCCTGGAGTCAGCGGAGAGTGTGTGGTTTATGGTTAACGTTTTCTTTCACTGGTGACTTCCTCTAACAAACGGGTCTAGCATGGTGCACTTCCAAACAACACTCATTAAAGTCAGTGATGTCTGTATAGAAACAAGTGTCATCACCACCAATCATATAATCTTGCATAGCCTGTATACCTCGTCAAAGACGGCAATAACCCAAGAGCTCTCAGCAAGCCTTCCTGAGTTAGCGGGGAGTGCAGGGGTTGGAATGGAGCCAAGAACAGATGAAATGGACTTGACCGGTCATTTTATCTTCAACTGTAAATAACTAAAATCGAGAGAATGAAGTCTTTGTTTGTTAAACTATTTTTATTGTaatgaaagaaaataaagaaTGAGACTCCGCCCA

Function

NR:

description
zinc finger protein DPF3-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954885.1 False 4568 mRNA 0.44 10 43695222 43735408
XM_036954884.1 True 4612 mRNA 0.44 10 43697125 43735408
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110497938 LOC106588908 coding upstream 291 43684258 ~ 43694931 (+)
LOC110498580 LOC106599766 coding upstream 51744 43638479 ~ 43643478 (+)
LOC110497936 LOC106589077 coding upstream 60199 43628125 ~ 43635200 (+)
LOC110498579 LOC106599786 coding upstream 107712 43583647 ~ 43587510 (+)
LOC110497933 LOC106589343 coding upstream 204556 43483464 ~ 43490666 (+)
LOC110497947 LOC106588052 coding downstream 191664 43927072 ~ 43931372 (+)
LOC110497948 NA coding downstream 209217 43944625 ~ 43946674 (+)
zgc:194887 LOC106587488 coding downstream 428624 44164032 ~ 44167404 (+)
LOC118941479 LOC106586952 coding downstream 674841 44410249 ~ 44430245 (+)
LOC110497955 LOC106586878 coding downstream 704734 44440142 ~ 44501752 (+)
G1627212 NA non-coding upstream 98903 43595954 ~ 43596319 (+)
G1627157 NA non-coding upstream 158960 43536052 ~ 43536262 (+)
G1627148 NA non-coding upstream 164502 43530509 ~ 43530720 (+)
G1626893 NA non-coding upstream 189418 43505582 ~ 43505804 (+)
G1627353 NA non-coding downstream 56290 43791698 ~ 43792446 (+)
G1627367 NA non-coding downstream 77463 43812871 ~ 43813077 (+)
G1627319 NA non-coding downstream 79185 43814593 ~ 43816501 (+)
G1627368 NA non-coding downstream 82047 43817455 ~ 43817909 (+)
G1627370 NA non-coding downstream 83509 43818917 ~ 43819117 (+)
LOC110497931 LOC106589425 other upstream 288095 43279273 ~ 43440028 (+)
G1625710 NA other upstream 1443651 42250731 ~ 42251571 (+)
G1624524 NA other upstream 1658104 42036328 ~ 42037118 (+)
G1624565 LOC100846954 other upstream 1659278 42035353 ~ 42035944 (+)
tmem260 LOC106593970 other upstream 1665716 41988770 ~ 42029506 (+)
G1628073 LOC106610840 other downstream 678914 44414322 ~ 44448672 (+)
G1628486 NA other downstream 947954 44683362 ~ 44748925 (+)
G1628488 NA other downstream 952974 44688382 ~ 44747446 (+)
G1628550 NA other downstream 1094514 44829922 ~ 44886234 (+)

Expression

LOC110498362(LOC106588971) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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LOC110498362(LOC106588971) Expression in each Bioproject

Bar chart with 21 bars.
LOC110498362(LOC106588971) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network