Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110497947 |
| gene name | LOC106588052 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 43927072 ~ 43931372 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| sodium/bile acid cotransporter-like isoform X2 |
| id | description |
|---|---|
| K14341 | SLC10A1, NTCP; solute carrier family 10 (sodium/bile acid cotransporter), member 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021574434.2 | False | 1916 | mRNA | 0.46 | 6 | 43927072 | 43931372 |
| XM_021574435.2 | True | 1783 | mRNA | 0.46 | 6 | 43927072 | 43931372 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110498362 | LOC106588971 | coding | upstream | 191664 | 43695222 ~ 43735408 (+) |
| LOC110497938 | LOC106588908 | coding | upstream | 232141 | 43684258 ~ 43694931 (+) |
| LOC110498580 | LOC106599766 | coding | upstream | 283594 | 43638479 ~ 43643478 (+) |
| LOC110497936 | LOC106589077 | coding | upstream | 292049 | 43628125 ~ 43635200 (+) |
| LOC110498579 | LOC106599786 | coding | upstream | 339562 | 43583647 ~ 43587510 (+) |
| LOC110497948 | NA | coding | downstream | 13253 | 43944625 ~ 43946674 (+) |
| zgc:194887 | LOC106587488 | coding | downstream | 232660 | 44164032 ~ 44167404 (+) |
| LOC118941479 | LOC106586952 | coding | downstream | 478877 | 44410249 ~ 44430245 (+) |
| LOC110497955 | LOC106586878 | coding | downstream | 508770 | 44440142 ~ 44501752 (+) |
| LOC110497958 | eif2ak4 | coding | downstream | 606134 | 44537506 ~ 44559873 (+) |
| G1627390 | NA | non-coding | upstream | 67422 | 43850806 ~ 43859650 (+) |
| G1627389 | NA | non-coding | upstream | 76355 | 43850414 ~ 43850717 (+) |
| G1627374 | NA | non-coding | upstream | 98867 | 43827975 ~ 43828205 (+) |
| G1627370 | NA | non-coding | upstream | 107955 | 43818917 ~ 43819117 (+) |
| G1627368 | NA | non-coding | upstream | 109163 | 43817455 ~ 43817909 (+) |
| G1627446 | NA | non-coding | downstream | 10488 | 43941860 ~ 43942395 (+) |
| G1627537 | NA | non-coding | downstream | 157496 | 44088868 ~ 44089100 (+) |
| G1627544 | NA | non-coding | downstream | 167581 | 44098953 ~ 44099167 (+) |
| G1627818 | NA | non-coding | downstream | 190902 | 44122274 ~ 44122571 (+) |
| G1627821 | NA | non-coding | downstream | 192219 | 44123591 ~ 44123869 (+) |
| G1627319 | NA | other | upstream | 110571 | 43814593 ~ 43816501 (+) |
| LOC110497931 | LOC106589425 | other | upstream | 519945 | 43279273 ~ 43440028 (+) |
| G1625710 | NA | other | upstream | 1675501 | 42250731 ~ 42251571 (+) |
| G1624524 | NA | other | upstream | 1889954 | 42036328 ~ 42037118 (+) |
| G1624565 | LOC100846954 | other | upstream | 1891128 | 42035353 ~ 42035944 (+) |
| G1628073 | LOC106610840 | other | downstream | 482950 | 44414322 ~ 44448672 (+) |
| G1628486 | NA | other | downstream | 751990 | 44683362 ~ 44748925 (+) |
| G1628488 | NA | other | downstream | 757010 | 44688382 ~ 44747446 (+) |
| G1628550 | NA | other | downstream | 898550 | 44829922 ~ 44886234 (+) |
| G1628689 | NA | other | downstream | 955499 | 44886871 ~ 44887173 (+) |
