LOC110497952 (LOC106587421)


Basic Information

Item Value
gene id LOC110497952
gene name LOC106587421
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 44167486 ~ 44186610 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574438.2
TATGGGAATTTCTCCTCCCAGCTAGCGTCAGCTACATCTGTGTCTGTCAGGGAGGACAGTAGTATTAGCAGGGATCAAGCATCATCTCTTTTCCTTTCTGCCACAGACACTGACTGAGATCCAACTTCACTGAAAGGGAGTGAGCGTCACCAGCCAGTCTACAGCAGTTCAGGGGAAAGTtcacccctcctctttctctctctctctttctctcctcatcaGAAACCTTCCTCTACTCCTCTAGAGCATTGGTTAATTCACAAATAACAAAGTAAGGATGCCATGCAACTTGTGGATAATCTTCTTCATTGGACTGCTACGTTGACTGATTTCTCTCCATTTTTTCTCTCCGAAAGAGATGTCCTCTTCTCTGTAGTCAACGTCTGAGCGGTGACAACTACAGCCTTCTACTTCCCGACATACAATATTACTCTGGGATCTATATATCTGGACTTCTGTAGCATGTTGGGATACTGTCAGTTAGATTTCTCATCCGCTGTgacctcatcctcatcctctttCCCAGGGTTGTGATTACACTTTTCAGCCCTGAGATTAACCTTGAGAGTTCAGAGCAAAACAAAAGGATTAAATATTAACTGGGAGAATCTATCTTCACACATCAAGAAGATCCTGCTGTCACACTGAAGGCAACGGGGCTTGAATAGTGAAAGTCAACTGATAGCCTACTCAAGATGGCATACCCAACAGATTACTCTCTCATAGCCATACCACTCATACCACAATAAGGACAACGTTAGAGAAACAACATGGAAGGTGGGGGAATACAGAACTTGTCCATAAATGGCAATGCATCAGACATCCACCCTGTCACACACAGTCTATGGGAGGTCATAACCATAGCAACTGTGTCGGCCATCGTGAGCCTGATTACGATAGTGGGGAACGTCCTGGTGATGCTGTCGTTTAAGGTTAACAGCCAGCTGAAGACAGTCAACAACTACTACCTGCTGAGTTTGGCTGTAGCTGACCTCATTATAGGTGTGTTCTCTATGAACCTCTACACCTCCTACATACTGATGGGATACTGGGCACTGGGGAGTGTGGCTTGTGACCTCTGGTTGGCTTTGGACTACGTGGCCAGTAATGCGTCAGTGATGAACCTGCTGGTAATCAGTTTTGACCGGTACTTCTCCATCACCAGACCCCTGACCTACAGAGCCAAGCGCACCCCCAAACGAGCTGGGGTCATGATAGGCATGGCCTGGCTGGTGTCCCTCATCCTGTGGGCCCCTCCCATACTGTGCTGGCAGTATTTTGTGGGGAAAAGGACAGTCCCTGAAAGGCAGTGTCAGATCCAGTTCTTCTCGGAGCCAGTGATAACATTTGGGACAGCCATTGCTGCGTTTTACATCCCAGTGTCAATCATGACCATCCTGTACTGTCGGATCTACAAGGAGACGGAACGTCGCACCAAGGACCTCGCTGAGCTCCAGGGCATCAACAGTTCCACAGACACTGGTGTCACCAAGCCCCAGAAAACCATCATTAGATCCTGCTTCAACTGCAAGCAGCTCAGCTCTGCCTCCCGCGACAGAACCCAGGCCTCCTGGTCCTCCTCCAACAGGAGCAATGCAGCCAAATCAGCAGCAGCCACCAACGACGAGTGGTCCAAGAGTGAGCAGCTGACCACCTTCAACAGCTATGCCTCCTCGGAGGACGAGGAGCGGCCCGTGTCCCCGGGGGCCTTTCAGCCCACCTGCCGGAACCAGGAGTGTAGGCAGAGCACGGGTGCAGCGGGCTGTGATAAAGAACAGCTCAGCAGTTATGAGGAGAACAACTTCTTCCACACGCCACCAAAGACCAACTCCCAGAAGAGCAAGAAGTGTGTGTCCTACAAGTTTAAACCAGTTCCCAAAGACACTAGCAGCGGTGCCCAGCAAAGCAAGAATGGGGACACTAACATGGCCCCATCATCTTTCTCTTCAGCTGACTCTATGAGTgccccaccctccacctcctcctccaagccAATAGACACCACTCTGAAGATCCAGCTGACCAAGAGGAAGAGGATGGTGCTGATTAAGGAGAGGAAGGCTGCCCAGACTCTCAGTGCTATCTTGCTGGCCTTTATCCTGACGTGGACACCATACAACATCATGGTGCTCATCTCCACCTTCTGCTCTGACTGTatccctgtgtctctctggcACCTGGGCTACTGGCTGTGCTATGTCAACAGTACAGTCAACCCAATGTGCTACGCGCTCTGCAACAAGACCTTCCAGAAGACCTTCCGCATGCTGCTGCTCTGTCAGTGGAAGAagaagagagtggaagagaaaCTTTACTGGTACGGGCAAAACCCTGTAGTGAGCAGCAAGCTAACATGAGCCATTCACACCTTCCTTCAGAGGAACGAGTATGAAGACTATATGACTCGATAGATG

Function

NR:

description
muscarinic acetylcholine receptor M5-like

GO:

id name namespace
GO:0007213 G protein-coupled acetylcholine receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0001696 gastric acid secretion biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016907 G protein-coupled acetylcholine receptor activity molecular_function

KEGG:

id description
K04133 CHRM5; muscarinic acetylcholine receptor M5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574438.2 True 2414 mRNA 0.50 2 44167486 44186610

Neighbor

gene id symbol gene type direction distance location
LOC110497951 acp7 coding downstream 7221 44135771 ~ 44160265 (-)
LOC110497950 NA coding downstream 58091 44107330 ~ 44109395 (-)
LOC110497949 LOC106587655 coding downstream 150653 44007318 ~ 44016833 (-)
LOC110497946 LOC106587737 coding downstream 226166 43931473 ~ 43941320 (-)
LOC110497944 LOC106588122 coding downstream 244436 43918670 ~ 43923050 (-)
LOC110498363 LOC106587081 coding upstream 45553 44232163 ~ 44399357 (-)
grem1b LOC106586810 coding upstream 316559 44503169 ~ 44505276 (-)
LOC110497957 LOC106586717 coding upstream 332304 44518914 ~ 44529276 (-)
LOC110498364 LOC105024319 coding upstream 345464 44532074 ~ 44535742 (-)
LOC110497959 LOC106586563 coding upstream 374811 44561421 ~ 44603811 (-)
G1627807 NA non-coding downstream 72573 44094598 ~ 44094913 (-)
G1627803 NA non-coding downstream 77880 44089372 ~ 44089606 (-)
G1627800 NA non-coding downstream 80446 44086828 ~ 44087040 (-)
G1627722 NA non-coding downstream 224604 43942646 ~ 43942882 (-)
G1627709 NA non-coding downstream 305014 43862004 ~ 43862472 (-)
G1627932 NA non-coding upstream 34121 44220731 ~ 44221039 (-)
G1627945 NA non-coding upstream 39928 44226538 ~ 44226803 (-)
G1628139 NA non-coding upstream 56504 44243114 ~ 44243359 (-)
G1628141 NA non-coding upstream 57463 44244073 ~ 44244523 (-)
G1628142 NA non-coding upstream 58582 44245192 ~ 44245401 (-)
G1627068 NA other downstream 758377 43408727 ~ 43409109 (-)
G1626324 NA other downstream 1329052 42759294 ~ 42838434 (-)
G1626232 LOC106611303 other downstream 1526213 42640449 ~ 42641273 (-)
LOC110498355 atg2b other downstream 1696784 42465705 ~ 42480874 (-)
G1626105 NA other downstream 1911689 42255235 ~ 42255797 (-)
LOC110498001 NA other upstream 1817155 46003765 ~ 46008718 (-)
G1631005 NA other upstream 2432597 46619207 ~ 46629506 (-)
G1631120 LOC106612182 other upstream 2643724 46830334 ~ 46830650 (-)
G1632192 LOC106575636 other upstream 3729685 47916295 ~ 47980466 (-)
G1632228 NA other upstream 3781904 47968514 ~ 47970332 (-)

Expression


Co-expression Network