LOC118941479 (LOC106586952)


Basic Information

Item Value
gene id LOC118941479
gene name LOC106586952
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 44410249 ~ 44430245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954902.1
GCAGCGGTGGACGCTGGCTGCAGTGAGGATATAGATACATTATTTGTCACGCAACAAAAATTGGTAAATCGCAGCTTATCGTCCTCAAACAGCTAAATCATTTATCTGCAGGAGGTGCGTTggatgtatccatgcttttgatTATTGAATTGGGACACTGGAACCCTTCCTTTTGGAGAACATTTAAAGGAGACGTGCAACTTAAAGGTGCACCGTTTTCCGATGGAATTTAATAACGTAAGACATAATGGAATAGTTTATTTTGACGATATATCATGTGCATAGTTTGTGAAACAGGAAACAGAATAGAGACGCATGCATTAAATGGCTTGCTGCTGCAAGGTGAAACCCTACAGAGGCAGGAGTTCAATCAACCAGATGATGAACAGCTAGAGCTCTTCAGACTCTTCCTCTGAAGTCCAACGCCAAACACACCAGCGTCTGGGGACAACAGTCCATTTTTATTAAAGTGCTTAAGCAATTAACATGGCGCCCATAATGGAGGGCAGGCATACAGTCCTGTGTCTATACGAGCCCATCCGGGAACTGTGCAGTATCAGCCTTTATCAACCCAAGGGGAGGGCCCCAGGGTTTATGTACAAGAGCCACGCCCCTCGGTGGGCCCAGCCCTGTAATGACCAAGACCAGGGAGATGTAGATCCCATGGCAGCCAAAAGAAGAAGCCAGTCTTCTGAGTCTGCAGGCGAACTCCTCAACTGCTGCCAGGCAACAAATGAGGCTGTAGCTGAGCTCTGCTGGTTAGCCGCGGAGCACCACCAGTTGCTGGCTGATCTCCTATCTCTGTGTGGAGACTGCGCTGACAGAGTCAGGATGGGTAATCAGGATGGGAAGCTCCAGGATCACAGGGAGGGTTGTGGGAGCTTCTCAGGACAGGTCCTCAGCAGCAATGCTCAACATGCTCTCTCTATGTCTTTGGGGCACGATAGAACCTCCTCACTGGGCAGGAAGCTGAAGAAGCTGGGGGGAAAGAAGTTAAACAGTGCAGAGGAGTTCCTGCACAGCAAGATGAAGAAGAAAGTAGGGATAGGGAGCACTGCAGTAGAGTCTTTATTTTTTCAGTCCTCGACTCAGACCCGGGATCAATCCAACCTCGTCCCAGTGGCAGAGGAGAAAATGATTCCTAGTACCCCAGCCTTTCTCCAATCTTCGGACACTCCAATGTCAGGCTCCTATGTCAGTGTGGCCAGCAACCCCATCCTCAGTATGGAGGAACACTTCCATATCGCTAGAGAGGGCTGGGACTTCATGGAGGAAGACTCTCGTGCCTCTGAGTCAGACCTGGACTTCTGCAACAACATGTCTGAGTACGACAGTGAACTCTGCTTGGGCTACGAAGCTTCGTCCTGTAGTTTATTGGAAGACGTGGAGGATCATGTTCAACTAGAGCATATGATGAGTGGGAACAACATTCGTCCCATGAGGTCTGAGGACAAGTCAGCCCACCAGCTGTATGATGAGGTCAACAGGAGGGACACGGGGGTTAGGGTGGTTGCCAAGGGGCAGGAGATGGAGGGCACAGTGCAACATGTTGGCCATATTAGCCCAGACTGGTCCAAAGAGTTCTATCCAGAGACTGAATCAGATGTACCTCAGCCGGGGATGAGCAGCTGTCAGCAAGGGTATGGGGAGTGGAGGAGTCTAAACAGGGACATTAAAGATACGGGAGGGACCAAACCTTCAGAGGGGCTGCAGCTGCATCTCTCACTTCCTGTTGAGGCCTCCTCTATCAAATTCCACAGGAAAAgcccctcttcaccctctctgTGTGGGGTGTTCAACACCTCCTACCCTGCCACCAACAGTCTGCAGAGCATGTCCCCAGTGCTGTCCCCCCTATCGCACAAGCTCCCCAGCCCCAAGCTCAACCACCGCATCCTGCTCCTCTCTGACGTTGACATTGGCCAGGGGACGGACAGTGACAGCCCCATGACTGGATCCGAAGAGAAGCCCAAAGTCACCACAGAGGTCATAGATAAGAATGGCAACAAGCGGACCATCACACGGCTGGACCTGAACCTCAGCAGACTACCAGGGACTTCCAAATGGAATTTAAATGGCCTATCTACGGCAACAGACATACTACGTTACCTACCGGCTGGACAGTCCTAACCAAAGCTAATCAAGACAAGAATTAGACAAATTCCAACTGAACTGTCAACAATCTAACTCAACTGTACTGTGATTCAATCCATCTGAACAACCTTACATGTAATGTACCATCATCTAAATATAAAGTCTCAGGTCATAGACATTAGCATAATGGATGAGCTGTAGATTACATTGAGCCATGGGCTGAAGTTTTGTACAAGTGCTACTGGCAACATTAGTAGTCCATGTCTGTGTTTTGTTTCCATGAATGTGAAA

Function

NR:

description
formin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954902.1 True 2385 mRNA 0.49 3 44410249 44430245

Neighbor

gene id symbol gene type direction distance location
zgc:194887 LOC106587488 coding upstream 242845 44164032 ~ 44167404 (+)
LOC110497948 NA coding upstream 463575 43944625 ~ 43946674 (+)
LOC110497947 LOC106588052 coding upstream 478877 43927072 ~ 43931372 (+)
LOC110498362 LOC106588971 coding upstream 674841 43695222 ~ 43735408 (+)
LOC110497938 LOC106588908 coding upstream 715318 43684258 ~ 43694931 (+)
LOC110497955 LOC106586878 coding downstream 9897 44440142 ~ 44501752 (+)
LOC110497958 eif2ak4 coding downstream 107261 44537506 ~ 44559873 (+)
cyp1c1 cyp1c1 coding downstream 556427 44986672 ~ 44988391 (+)
cyp1c2 cyp1c2 coding downstream 561223 44991468 ~ 44993957 (+)
LOC110497964 LOC106583112 coding downstream 620915 45051160 ~ 45053552 (+)
G1628028 NA non-coding upstream 56354 44353393 ~ 44353895 (+)
G1627956 NA non-coding upstream 168538 44241383 ~ 44241711 (+)
G1627955 NA non-coding upstream 168931 44240988 ~ 44241318 (+)
G1627852 NA non-coding upstream 229848 44179780 ~ 44180401 (+)
G1627837 LOC106587421 non-coding upstream 240117 44168074 ~ 44170132 (+)
G1628126 NA non-coding downstream 85201 44515446 ~ 44515964 (+)
G1628129 NA non-coding downstream 94515 44524760 ~ 44525164 (+)
G1628316 NA non-coding downstream 100291 44530536 ~ 44586188 (+)
G1628425 NA non-coding downstream 179749 44609994 ~ 44610230 (+)
G1628431 NA non-coding downstream 184288 44614533 ~ 44614833 (+)
G1627319 NA other upstream 593748 43814593 ~ 43816501 (+)
LOC110497931 LOC106589425 other upstream 1003122 43279273 ~ 43440028 (+)
G1625710 NA other upstream 2158678 42250731 ~ 42251571 (+)
G1624524 NA other upstream 2373131 42036328 ~ 42037118 (+)
G1624565 LOC100846954 other upstream 2374305 42035353 ~ 42035944 (+)
G1628486 NA other downstream 253117 44683362 ~ 44748925 (+)
G1628488 NA other downstream 258137 44688382 ~ 44747446 (+)
G1628550 NA other downstream 399677 44829922 ~ 44886234 (+)
G1628689 NA other downstream 456626 44886871 ~ 44887173 (+)

Expression


Co-expression Network