LOC110497963 (LOC106583053)


Basic Information

Item Value
gene id LOC110497963
gene name LOC106583053
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45064237 ~ 45068205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574452.2
GTGAGGAATGTGCTGTGCTCTTTCCCGAGTTCAATTCCATCCATGTTACAAGCAGTAAATCAGTGgggactccggcagctcctgttCTGCCCTCTCCCTCAGGTAGTGGGTGCAGCCAGCGGGATTTACGCCCATGATTCAGACTCACACAGCAGGAAGGGTTACATCACCAGAGGGCAAACACTCTCTGCCGTTAGGTAGGGAGAAAAACCACAAAACCCCACCTGCTCGTCTTAACCCTCTTCTACACTCACCTGGGTTACTTACAGAGGACACTTTCTCAACCAACAAACCTGACAGGGTCTCTACTGATAAGGATTATAAGACTCAGGTAAGAGACAAGAGTAGCTAGGCTGTTAAATCCAGGATTTAGAGAATTTTCTGGGGAAGTGGCACCAGTTCGCTCTCTCAAGGTTGTTCACAGTGCTTCTCCCACTGCAGTTGAACAAGCCTCATCATGTCAGGAGAAACAGTGTCACAGTCTACAGGTATCAGCCCTAGCCTGGCTTCCTGATAGAGACAGACGTGTGGGTGTGGGATACAGATGCCCTGTGTACACAGCAGTACAGAGCTTTTTTCTAAGACGGTAGACTGCATTTAGGCTTAATCTCAGAAGTGAACCAAAGGACATCAACAGGACCAGGTAAGATGCCACTGAAGATGTCTCTGTGCCGTAAGCCAGCCTCGGCCCGCTGGTCTAGGACCCAGAAGCGCAGGGAGGTGCTCTCTGTCAACATGATCAGCCTCCCATTGGCCGACTTCTGCCACGTTGCCCACATCGGGAACAATGCCAGCAGTGACAGCTTCGGGGACCTGTCCTTTCTGAAGGGGGGCCACAGCCTGATACTGCACAGCTCTCAGAGCGAACATAACCTCTTCCTGGCCTGCTACCCTCCACCCAAACCCCCACGACTTAACCTGGGTGAGGCCGAGGCCCTAAAGATCCCAGAGTGGACCAGGGCCCACTTGAGCCACAGCGcctcagagaggaggaaggagtacCGATCCTTGCCCATGCTGGACAGTGAGGAGGGCGAGGGGGCGATCGAGGCCAGTGTTAGCCCCAGCCACGGGGTCATGGTCAGTAGCCACAGTCCTGGCCGGGGCAGTCTGAGCTCTGGCAGGGATGGAGATTCCACTCAGACCTGCCATGAGAACACACTGCAGCTGGATGAGGTGGACAACAGCTTCTCCTTCAGCCTGGACCTGGGCCCCTCCATCCTGGACGATGTGCTGCAGGTCATGGACAGGCTCCACTATTAGAGGAACAGCCAGACAAACATGGGTCCTCAGCAAGAGACTTCACTGACATAATTATATGTGACTGGCATTAGAACACTCTAATCTGTCCTAGGATATGAACAGCTGACATGAAAAAAAACTCTTGACTTAAAGAAACAATGTCAGAACATTTGAAACACCATGGGGATATAATCTCAATCTTTGGATTAGCTGACTGTGGCTGAATTATATAAAATGCAATGGACTCAAAGAGTAATGGATGAGATGTGGACAGAACTGTAACTACAAAGAGATCCTCCTCCATTTCATGTGAGGTAATCTaacccagtggttcccaacctgagGTACgtagtgctttcggaaagtattcagaccccttgactttttccacattttgttacgttacagctttattctaacaTGGATTAAATCATCCCCccccttcaa
>XM_021574453.2
GTGAGGAATGTGCTGTGCTCTTTCCCGAGTTCAATTCCATCCATGTTACAAGCAGTAAATCAGTGgggactccggcagctcctgttCTGCCCTCTCCCTCAGGTAGTGGGTGCAGCCAGCGGGATTTACGCCCATGATTCAGACTCACACAGCAGGAAGGGTTACATCACCAGAGGGCAAACACTCTCTGCCGTTAGGTAGGGAGAAAAACCACAAAACCCCACCTGCTCGTCTTAACCCTCTTCTACACTCACCTGGGTTACTTACAGAGGACACTTTCTCAACCAACAAACCTGACAGGGTCTCTACTGATAAGGATTATAAGACTCAGTTGAACAAGCCTCATCATGTCAGGAGAAACAGTGTCACAGTCTACAGGTATCAGCCCTAGCCTGGCTTCCTGATAGAGACAGACGTGTGGGTGTGGGATACAGATGCCCTGTGTACACAGCAGTACAGAGCTTTTTTCTAAGACGGTAGACTGCATTTAGGCTTAATCTCAGAAGTGAACCAAAGGACATCAACAGGACCAGGTAAGATGCCACTGAAGATGTCTCTGTGCCGTAAGCCAGCCTCGGCCCGCTGGTCTAGGACCCAGAAGCGCAGGGAGGTGCTCTCTGTCAACATGATCAGCCTCCCATTGGCCGACTTCTGCCACGTTGCCCACATCGGGAACAATGCCAGCAGTGACAGCTTCGGGGACCTGTCCTTTCTGAAGGGGGGCCACAGCCTGATACTGCACAGCTCTCAGAGCGAACATAACCTCTTCCTGGCCTGCTACCCTCCACCCAAACCCCCACGACTTAACCTGGGTGAGGCCGAGGCCCTAAAGATCCCAGAGTGGACCAGGGCCCACTTGAGCCACAGCGcctcagagaggaggaaggagtacCGATCCTTGCCCATGCTGGACAGTGAGGAGGGCGAGGGGGCGATCGAGGCCAGTGTTAGCCCCAGCCACGGGGTCATGGTCAGTAGCCACAGTCCTGGCCGGGGCAGTCTGAGCTCTGGCAGGGATGGAGATTCCACTCAGACCTGCCATGAGAACACACTGCAGCTGGATGAGGTGGACAACAGCTTCTCCTTCAGCCTGGACCTGGGCCCCTCCATCCTGGACGATGTGCTGCAGGTCATGGACAGGCTCCACTATTAGAGGAACAGCCAGACAAACATGGGTCCTCAGCAAGAGACTTCACTGACATAATTATATGTGACTGGCATTAGAACACTCTAATCTGTCCTAGGATATGAACAGCTGACATGAAAAAAAACTCTTGACTTAAAGAAACAATGTCAGAACATTTGAAACACCATGGGGATATAATCTCAATCTTTGGATTAGCTGACTGTGGCTGAATTATATAAAATGCAATGGACTCAAAGAGTAATGGATGAGATGTGGACAGAACTGTAACTACAAAGAGATCCTCCTCCATTTCATGTGAGGTAATCTaacccagtggttcccaacctgagGTACgtagtgctttcggaaagtattcagaccccttgactttttccacattttgttacgttacagctttattctaacaTGGATTAAATCATCCCCccccttcaa

Function

NR:

description
cdc42 effector protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574452.2 False 1689 mRNA 0.51 2 45064237 45068205
XM_021574453.2 True 1579 mRNA 0.51 3 45064237 45068205

Neighbor

gene id symbol gene type direction distance location
LOC110497964 LOC106583112 coding upstream 10685 45051160 ~ 45053552 (+)
cyp1c2 cyp1c2 coding upstream 70280 44991468 ~ 44993957 (+)
cyp1c1 cyp1c1 coding upstream 75846 44986672 ~ 44988391 (+)
LOC110497958 eif2ak4 coding upstream 504364 44537506 ~ 44559873 (+)
LOC110497955 LOC106586878 coding upstream 562485 44440142 ~ 44501752 (+)
LOC110497966 LOC106582786 coding downstream 60810 45129015 ~ 45147200 (+)
LOC110497965 LOC100380739 coding downstream 83321 45151526 ~ 45157970 (+)
LOC110497967 adssl2 coding downstream 98695 45166900 ~ 45174085 (+)
LOC110497969 siva1 coding downstream 106084 45174289 ~ 45198342 (+)
LOC110497971 LOC106582637 coding downstream 148796 45217001 ~ 45252828 (+)
G1628783 NA non-coding upstream 23705 44978898 ~ 45040532 (+)
G1628781 NA non-coding upstream 92933 44971092 ~ 44971304 (+)
G1628737 NA non-coding upstream 141908 44922098 ~ 44922329 (+)
G1628717 NA non-coding upstream 155730 44908267 ~ 44908507 (+)
G1628708 NA non-coding upstream 163005 44901026 ~ 44901232 (+)
G1628840 djc17 non-coding downstream 18677 45086882 ~ 45094330 (+)
G1628861 NA non-coding downstream 50247 45118452 ~ 45118655 (+)
G1629028 NA non-coding downstream 143688 45211893 ~ 45212120 (+)
G1628689 NA other upstream 177064 44886871 ~ 44887173 (+)
G1628550 NA other upstream 178003 44829922 ~ 44886234 (+)
G1628486 NA other upstream 315312 44683362 ~ 44748925 (+)
G1628488 NA other upstream 316791 44688382 ~ 44747446 (+)
G1628865 LOC105030512 other downstream 118757 45186962 ~ 45194241 (+)
LOC110497977 LOC106582390 other downstream 230294 45298446 ~ 45301424 (+)
G1629134 spit1 other downstream 328626 45396831 ~ 45399822 (+)
G1629200 NA other downstream 433589 45501794 ~ 45502263 (+)
G1629210 NA other downstream 447969 45516174 ~ 45516648 (+)

Expression


Co-expression Network