LOC110497965 (LOC100380739)


Basic Information

Item Value
gene id LOC110497965
gene name LOC100380739
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45151526 ~ 45157970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954910.1
TCTCTGCTTGCTCACAGGGAAGTCACACAGGGAACGCTGAGGGCTTTAAGATCAGCTCTCTGCTGAAGCTGACTGAGACTAAGGCCAACAAGAGCCGCATTACCCTACTCCATCACATTCTGGAGGAGACAGAGCTGAACCACCCAGAGCTGTTGAACCTTCCTGACGACATTGAGATTTGTGAAAAGGCAGCTGGAGTCAACCTTGACTCCATTCAGGCAGAAGCCAGTGCCTTAGTAAAACGACTGAAAGAAGCGGCAAAGAAAGTCACCAACTCTGTGGACGATGTAAAGGAGCAGTTCGAAAAGGTCGTTGAGGAAAACCTGGAGGCCTGCCTGGATTTGGAAAAGCGGTTTGCAGAGATTGTGAGGAAGAAGGGTGACCTGGCACTCTACCTGTGTGAGGATGCAAACCAACTCTCCCTGGAAGAGCTCTTCGGCACCATTAAGACCTTCAGGGGGCTTTTCATCAAAGCCTTAAAGGAAAACAAGAGCAGAAAAGAGCAGGCTGTGAAGGCGGAGAAAAGGAAGAAGCAGCTTGAGGAGGAGGAATCCAAGAGACAGAAGGGGGAGAACGGAAAAATAATCCGGAAAGGACCCCCGCCACAGGACGATGGCTGTATTATCGACCACCTCCTTAATGATATCCGGAAAGGCTTTCATCTCAGGAAGACCCGGCCCAGGTGCGAAACGGATAGCCCCCTCTCTTGTGAAATGAATAGGGATACGGGCCAGCCTGGATCAAGTGTCAAGCCTGTAAAAGAAGATGTCGAAGCCTCGGTCTCAGAAGTCTCCAGCACTCCCATTCCCACCCAACCCCAGGCAGAAGAGAGGGCACCAAGAGAAGGAGTGAACGGATTCCCCAGCATACCCAAAGAAATATACCCCCAAAAAACAGCTTTGTCAAAGACTAACCGGCTCCCAGCTGAATCCCAGGATGGAGGGGAGCCTCTGCGAAGCCTCCCCACAGACAATTCGCCACCTCCGGCAATACTAGGAATGGATGTCCTAAATAACACCCCAAGCCCCTCTACCTTCACAGACCTGGCTGAAATCAACCAGAATGTCAACAGTGGCCTGGTGACGGAGGAATTGATGCCTGAGTGCTCACAGAGCAATGGAGAGGGTCAACTTAATGGAGCCTGCACACTGGCTGTCGCTGATATGGACATGATTATAGAGGGCAAGCTGATGGGAAAAACCATTGgccaagatgacattgaaggtGAGAGCAGCAGCATGATGGTAAAGACTCTTAGACCAGTTGAGACTGGGGATGACATGGTGGTAAAGATGGTGGCACAGGATAAGGGTGTAACTAATGGACAACAAGACACCAATGGCAACACAGACACCAATGGCAACAAGTGTTTGGTCAGTGCGGTGCAAAGCGTTGGAGTGGACTCTAAAGATCTGCTCTCATCGGTATCCGAAGCTCTGCCGCCTTTTGAGTCAGGGCCCCTAATACCAGAGGATAAAAAACAGCAGAAGCTCTTTAGAAGAAACAAAAATAAGAGTAATGAAGGTAATGTATTAATTCATTCTAATAAAGATGTTTGGAACTGTGGTCTCCTGACGTGTATGAAAGGGAGATGTTGTCCCCTTTTTTTATGTGGTTTTATTGCATTTTACTTTTTATATAGTGTCTGATCATTTGGTGCTGTTTTTAAAAGTTAAGTTTTAGCATGAATGTACTGTTTTTGGAAACCGATCTTAAAAGCTTCCCATTTACATCTTATTGAGTCCTTTCATGATCAAATAGTTTGTTTTTcgtgtttgtttttttctttgacTCTCTAAAGCACAAGGTAACACTGGAAAGCGACACCCTAAATGtaaaaaggggtgtgtgttgcaGTGAGGTAGGTCAAACGACTGGATGGAAAACTAACTGGTGCAAGAGGGACATTTTTATTCAACCcataatttcaattaacagacgTGCGTCAGTCTAACCAGGATCTGGTTTAATCTGATTGTGTCTTGTCCTGCTATTAACACTGTCCTCTTCAGTAAAAATCTTTAAAATCCCCGGTAAACCACTTTGTCTGGCATTTTGGCTGCTACTTTATGCCCTTTTGTCAGCCTGAATCTTATATCTTGACAAGTCTTAAAATCAACCTGACACCTCATAAACGCCACAGTTGAatatttatcatttatatcaaAGTACACTTCAATGTCATACCTCAGTAGGAAGAACTTGCTTAGCATTTCTGCTCTGTGTGTAATCTTTTTGAAGGAGTTTCTTTGTTTCCTGTACCTCCGTACCCATATGTTGTTGAACTGCCCAACCTCACAACAACCTAAACAGCTAAATGGATTATTTAACCTACTAACACAATTACTTTTTTTGTGCTTCCTGTAAACTGTGTCGTTTTGTAAGTCTGTCTTTGCTGAAAGATGTTTTAATTTAAATTAATTTTGTGCTTTAATGATCTAGAGATTGATGCAACCAGTAGCACTATGAGATTATTTTGGAAATGAAATGGCATAAGAAACATAATAAAAGTCCATTCTCACCCCT

Function

NR:

description
PREDICTED: inverted formin-2

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954910.1 True 2526 mRNA 0.44 7 45151526 45157970

Neighbor

gene id symbol gene type direction distance location
LOC110497966 LOC106582786 coding upstream 4326 45129015 ~ 45147200 (+)
LOC110497963 LOC106583053 coding upstream 83321 45064237 ~ 45068205 (+)
LOC110497964 LOC106583112 coding upstream 97974 45051160 ~ 45053552 (+)
cyp1c2 cyp1c2 coding upstream 157569 44991468 ~ 44993957 (+)
cyp1c1 cyp1c1 coding upstream 163135 44986672 ~ 44988391 (+)
LOC110497967 adssl2 coding downstream 8930 45166900 ~ 45174085 (+)
LOC110497969 siva1 coding downstream 16319 45174289 ~ 45198342 (+)
LOC110497971 LOC106582637 coding downstream 59031 45217001 ~ 45252828 (+)
trnaa-ugc-144 NA coding downstream 84933 45242903 ~ 45242978 (+)
LOC110497972 LOC106582486 coding downstream 108128 45266098 ~ 45291658 (+)
G1628861 NA non-coding upstream 32871 45118452 ~ 45118655 (+)
G1628840 djc17 non-coding upstream 57196 45086882 ~ 45094330 (+)
G1628783 NA non-coding upstream 110994 44978898 ~ 45040532 (+)
G1628781 NA non-coding upstream 180222 44971092 ~ 44971304 (+)
G1628737 NA non-coding upstream 229197 44922098 ~ 44922329 (+)
G1629028 NA non-coding downstream 53923 45211893 ~ 45212120 (+)
G1629047 NA non-coding downstream 98930 45256900 ~ 45257116 (+)
G1629069 NA non-coding downstream 152906 45310876 ~ 45377620 (+)
G1628689 NA other upstream 264353 44886871 ~ 44887173 (+)
G1628550 NA other upstream 265292 44829922 ~ 44886234 (+)
G1628486 NA other upstream 402601 44683362 ~ 44748925 (+)
G1628865 LOC105030512 other downstream 28992 45186962 ~ 45194241 (+)
LOC110497977 LOC106582390 other downstream 140529 45298446 ~ 45301424 (+)
G1629134 spit1 other downstream 238861 45396831 ~ 45399822 (+)
G1629200 NA other downstream 343824 45501794 ~ 45502263 (+)
G1629210 NA other downstream 358204 45516174 ~ 45516648 (+)

Expression


Co-expression Network