LOC110497967 (adssl2)


Basic Information

Item Value
gene id LOC110497967
gene name adssl2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45166900 ~ 45174085 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574457.2
CGTCCTGACATCACGGAGACATTGATATGGCAATACTACTCTTGGAAACATTCTAGTCTGTTTCGGACGGACAGCATAAGCAACATCATGTCGTTTAGCTGGTCAGCAAAAGACCACAAGAGTTATACAAATCCGCCCTCCAACCCAACCCAAGGGCTGAAGCGGCCACGGAACGAAACAGGGAACAAAGTGACAGTAGTGCTCGGTGCGCAATGGGGAGATGAAGGCAAAGGAAAAGTCGTCGATTTATTGGCGACTGAGTCTGACCTTGTTTGCAGATGTCAGGGTGGTAACAATGCAGGCCACACAGTGGTAGTGGAAGGCACAGAGTATGACTTCCACCTTCTCCCCAGTGGAATTATCAACCCCAAAAGCATATGTGTCATTGGTAATGGCGTAGTCATACACCTACCAGGTTTGTTTGAGGAGGCGGAGAACAATGAGAAGAAAgGTCTCAAAGGCTGGGAGAAGAGACTAATAGTCTCTGACAGAGCTCACCTTGTGTTTGATTTCCATCAGGTTGTGGATGGAATTCAGGAGACCCAGAGACAAGCAACAGAGGGAAAGATAATTGGAACAACCAAGAAAGGCATTGGACCCACCTATGCCAGCAAGGCATCTCGCATAGGACTGCGTGTCTGTGACCTGCTGGGAGACTTCAAGGAGTTCTCTACCAAATTCAAGAACCTTGTCGAACAGTACCAGTCCATGTACTCATCCCTGACAGTTGATACTGAAAGTCAGCTGAAAAAACTGAAGGAGTATGGAGAGAGGTTGCGGCCGATGGTTCGGGATGGAGTCTATTACATGTACGAGGCTCTTCATGGACCCCCAAAGAAAATTCTGGTGGAAGGGGCCAACGCTGCCCTCCTCGACATTGACTTTGGCACATATCCTTTTGTGACCTCATCAAACTGCACCGTTGGTGGGGCATGCACTGGTCTTGGCATCCCTCCCCTGAATATTGGTGAAGTGTATGGTGTATCAAAAGCCTACACCACCAGGGTGGGAATTGGTGCCTTCCCCACAGAACAACTCAATGTGACAGGTGAGCTGCTGCAGACAAGGGGTCATGAGGTGGGCGTGACCACAGGCAGGAAACGTCGCTGTGGCTGGCTGGACCTGGTCATCCTGAGATACGCTCACATGATCAATGGCTTCACTGCCATTGCTTTGACAAAACTTGACATCCTTGATGTGCTGGATGAGATCAAAGTAGGAGTGGCCTACAAAATCAATGGCAAAAGAATTCCCCATTTCCCAGCTGACATGGAGCTGTTGCACAAAGTGGAGGTAGAGTATGAGACCTTCCCCGGCTGGAAGAGTGACACGTCTGCAGCCAGGAAGTGGAATAATCTCCCCCAGAAGGCTCAGAACTACATCCGCTTTGTGGAGAACCACATTGGAGTACCCATTAAGTGGGTCGGTGTAGGAAAGTCCAGAGAGTGCATGATCCAGATGTTCTAGAGAGTttacatcctctctcctcaagATGGACGCACAAAGATATGGCATGATGTGACATATGTTTGCAACCCCCAAACTGTCTAatattgggtaaaaaaaaaaaaacttatacCCAACAGATTTGTGTAGCTTTGAAACAATGTTGACTGGTAATGTTGGTAACTTTACATCTATCTATGCAGTGCTTCTCATCAGTAAGTTGCCTTGTGATGATGTCGGCCAGAAAGTCCTATTACTGACCAAGGAGTAAATCTTACCTTGTGCCACACAACAAACATGAAAGATAAAAACACATCCAATAACTTTTCCTCCTGTGTAACCTTACCTGCCTTACATCTACTGTTTCAGTCTTCTTTACTCATTTATCACACCAGCAGACTACACATATTTTGTATCAACCAGCTGTTTGTTTGCACATGTTTAGGAGTGAAACAGTGTGATAAAAAATTGTAATTTTGTAGTAGGCTAATATGGAATTTGATATGTCTTTGCTAGCTACAATTTCATAAGCAAGACCTAACAAAGCATGAGTAAATGAGATGCTGCCTCACTGGAAGCTTTAAAATAAAACTTATATGATAACTTG

Function

NR:

description
adenylosuccinate synthetase isozyme 1 C

GO:

id name namespace
GO:0044208 'de novo' AMP biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0004019 adenylosuccinate synthase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01939 purA, ADSS; adenylosuccinate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574457.2 True 2053 mRNA 0.46 13 45166900 45174085

Neighbor

gene id symbol gene type direction distance location
LOC110497965 LOC100380739 coding upstream 8930 45151526 ~ 45157970 (+)
LOC110497966 LOC106582786 coding upstream 19700 45129015 ~ 45147200 (+)
LOC110497963 LOC106583053 coding upstream 98695 45064237 ~ 45068205 (+)
LOC110497964 LOC106583112 coding upstream 113348 45051160 ~ 45053552 (+)
cyp1c2 cyp1c2 coding upstream 172943 44991468 ~ 44993957 (+)
LOC110497969 siva1 coding downstream 204 45174289 ~ 45198342 (+)
LOC110497971 LOC106582637 coding downstream 42916 45217001 ~ 45252828 (+)
trnaa-ugc-144 NA coding downstream 68818 45242903 ~ 45242978 (+)
LOC110497972 LOC106582486 coding downstream 92013 45266098 ~ 45291658 (+)
LOC110497973 LOC106583826 coding downstream 117620 45291705 ~ 45296375 (+)
G1628861 NA non-coding upstream 48245 45118452 ~ 45118655 (+)
G1628840 djc17 non-coding upstream 72570 45086882 ~ 45094330 (+)
G1628783 NA non-coding upstream 126368 44978898 ~ 45040532 (+)
G1628781 NA non-coding upstream 195596 44971092 ~ 44971304 (+)
G1628737 NA non-coding upstream 244571 44922098 ~ 44922329 (+)
G1629028 NA non-coding downstream 37808 45211893 ~ 45212120 (+)
G1629047 NA non-coding downstream 82815 45256900 ~ 45257116 (+)
G1629069 NA non-coding downstream 136791 45310876 ~ 45377620 (+)
G1628689 NA other upstream 279727 44886871 ~ 44887173 (+)
G1628550 NA other upstream 280666 44829922 ~ 44886234 (+)
G1628486 NA other upstream 417975 44683362 ~ 44748925 (+)
G1628865 LOC105030512 other downstream 12877 45186962 ~ 45194241 (+)
LOC110497977 LOC106582390 other downstream 124414 45298446 ~ 45301424 (+)
G1629134 spit1 other downstream 222746 45396831 ~ 45399822 (+)
G1629200 NA other downstream 327709 45501794 ~ 45502263 (+)
G1629210 NA other downstream 342089 45516174 ~ 45516648 (+)

Expression


Co-expression Network