LOC110497969 (siva1)


Basic Information

Item Value
gene id LOC110497969
gene name siva1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45174289 ~ 45198342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574458.2
TAGCGTGCTAGTGTATTTTCCGCTGAGATAGCTGGCTATAAGAacggtatttatttattttatccctGTGTTGAAGCAAGCAAATTTGGTCGCGTGTTCTTCGTAGAAATGACTAAAAGAGCGTATCCTTTCGCTGAGTCATTCTCATCACAGTATAAAATTCACGTTGGACAAAAGGAGTTGAATCATCACGGCGTATTTGGGAACACGTACAGGCAAGAGGTCTTCGAAAAGACGAAGGACCTGCTCTTCAATGGGACCAAAGCTGTCATGGGAAAAATCTGGAATATAGATGCAGAGAAGTGCTTAGCAATACAGCCATCGGGGTCAGGTATGAAACCTGATGTGAGCCAGACACTCCTGAGGGGACAGACACTGATTGGGCAAGATGGCAGACTACAGAGAACTACACCTGTTCAAGGTTCAGCGTTGGCTCCAGTGGGGTGCTGTGTGTGTCAGAAGGCCCAGGGCACCAGGAGGCCGTGCTCCCAGTGTGACCGCCCAGCCTGCCCCTCCTGCATCCAGCAGTGTGCCAGCTGCTCCAGATCCTGCTGCTCTGTCTGCACCGTCATCGACTACAGTGGACAGTATGATCAAGTGCTGTGCTGTGGCTGCACATCATAATCAAGGATCAAGgattgtttttatacattttagttGTCATTTCACATTAAATGTTAATTCTCAAATGTTATACATGTGTATTTTTGTATATATGTAGTTTGTAGAATAAATACTTTGCTTGCTTC
>XM_036954911.1
TAGCGTGCTAGTGTATTTTCCGCTGAGATAGCTGGCTATAAGAacggtatttatttattttatccctGTGTTGAAGCAAGCAAATTTGGTCGCGTGTTCTTCGTAGAAATGACTAAAAGAGCGTATCCTTTCGCTGAGTCATTCTCATCACAGTATAAAATTCACGTTGGACAAAAGGAGTTGAATCATCACGGCGTATTTGGGAACACGTACAGGCAAGAGGTCTTCGAAAAGACGAAGGACCTGCTCTTCAATGGGACCAAAGCTGTCATGGGAAAAATCTGGAATATAGATGCAGAGAAGTGCTTAGCAATACAGCCATCGGGGTCAGGTATGAAACCTGATGTGAGCCAGACACTCCTGAGGGGACAGACACTGATTGGGCAAGATGGCAGACTACAGAGAACTACACCTGTTCAAGAATGGTCTGTGTGTATGGTTGTCTCAGGTTCAGCGTTGGCTCCAGTGGGGTGCTGTGTGTGTCAGAAGGCCCAGGGCACCAGGAGGCCGTGCTCCCAGTGTGACCGCCCAGCCTGCCCCTCCTGCATCCAGCAGTGTGCCAGCTGCTCCAGATCCTGCTGCTCTGTCTGCACCGTCATCGACTACAGTGGACAGTATGATCAAGTGCTGTGCTGTGGCTGCACATCATAATCAAGGATCAAGgattgtttttatacattttagttGTCATTTCACATTAAATGTTAATTCTCAAATGTTATACATGTGTATTTTTGTATATATGTAGTTTGTAGAATAAATACTTTGCTTGCTTC
>XM_021574459.2
TAGCGTGCTAGTGTATTTTCCGCTGAGATAGCTGGCTATAAGAacggtatttatttattttatccctGTGTTGAAGCAAGCAAATTTGGTCGCGTGTTCTTCGTAGAAATGACTAAAAGAGCGTATCCTTTCGCTGAGTCATTCTCATCACAGTATAAAATTCACGTTGGACAAAAGGAGTTGAATCATCACGGCGTATTTGGGAACACGTACAGGCAAGAGGTCTTCGAAAAGACGAAGGACCTGCTCTTCAATGGGACCAAAGCTGTCATGGGAAAAATCTGGAATATAGATGCAGAGAAGTGCTTAGCAATACAGCCATCGGGGTCAGGTATGAAACCTGATGTGAGCCAGACACTCCTGAGGGGACAGACACTGATTGGGCAAGATGGCAGACTACAGAGAACTACACCTGTTCAAGGTTCAGCGTTGGCTCCAGTGGGGTGCTGTGTGTGTCAGAAGGCCCAGGGCACCAGGAGGCCGTGCTCCCAGTGTGACCGCCCAGCCTGCCCCTCCTGCATCCAGCAGTGTGCCAGCTGCTCCAGATCCTGCTGCTCTGTCTGCACCGTCATCGAtctcccctcccggaggacctgagccttaaGACCATGCTTCAGGCCTACCTGACCCTACCTGGCCTGACAACTCCTGGCTGtccctgtccccagtccacctgattgtgctgctgatccagtttctgttgttctgcctgcggctatggaaccctgacctgttcacccgACGAGCAACCTTGTCCCGGACTTGCTGTTTTGACTTTCTAtttttctctcgctcgctctctctaccaGACAAGCTGCCTCgacctctgaatgatcggctatgaaaagccaactgacatttactcctgaggtgttgacctgttgcaccctatgtaaccactgtgattatttgaccctgctggtcatctatgaacgtttgttCTTCAAGATATTCAACCTGGCCTTAATGGCCACGTACTCTTATAATCTACACCCTGCACAACCAGAAGAGGGCTggtcctctaggtttcttcctaggttcctgcctttctagggagtttttcctagccactgtgcttctacatctgcaacgcttgctctttggggttttaggctgggtatcagtataagcactttgtgacaactgctgatgtaaaaagggctttaaaaaTCTATGTGATTGAATTTGATAGGCCAGATGGAATTATCACCATATTGCTTATCAGAGACGACAGTGGTGCCACTTCTGTATAGATTGTTACCTATCTAATCCTTTGTTCACCTCAAGTGCTTTGGGGGTTCATCAGTCGAAGCACATTTGTTGGAAAATAAATCTTCAAAAACTGGCAACACATCACTGGAAGTAGGCTGTTGGGGCTGTCTCAAGTTAGGCGTGAGTCAAATATTAGCCATCCTAGTAAACACATTGCAGAGTGTACATGCCTGGCTGTCATCTGAAACATTTACTTGAATTATTCTCTGTTCATTTATTATAAGGTGGATGCCAGAGCTGGGGTTATTCTCCCTTTGCTCGCTCTGAACTCTGTAATGACATTGTGTTAATGCACTCTTTAAATGGGAATGTGCAGCTGTCAGGGTTCAACACATCCCTACATCTGTCACTCTAATGTAACTCTGAAGTTCACAGTTTTCCTCCTAAGATTGTTCCTCTCCCCCTAGCATATGTATGGGGCCCTATGAGGAGAAGAAGCCGACTGGTCAGGCTTGGACACCAACTGCAGTGGGAGCGTGTGGCTTTGTCTTTCACCCATTCTTTTGGGGACCAGCTGTGCCCGGAGTGTGAGTGCCGAGCACAGCGATGCTACTGCTATAAATATGCGTCGGTGAGTGAGTGACAGCTGTGCAGTGGACCAAGGACACACTGTCTTGGCACTCCACGGACGAGTCACTCCAAACAAGGCAACCCCAGCATGACCTGAACACCAGTGATATATATCCAACTGTCTAGCTAATTGTCATTCATGTATTCAATTTCATAATGTAAGTTATGTATCGCAGAAGCATTTGAATGAAGCCAAACCAATTCTGTGACAAAATAAAAGGAAATGTAACTGAGAAAAACATTTTACGACAATGTC
>XM_036954912.1
TAGCGTGCTAGTGTATTTTCCGCTGAGATAGCTGGCTATAAGAacggtatttatttattttatccctGTGTTGAAGCAAGCAAATTTGGTCGCGTGTTCTTCGTAGAAATGACTAAAAGAGCGTATCCTTTCGCTGAGTCATTCTCATCACAGTATAAAATTCACGTTGGACAAAAGGAGTTGAATCATCACGGCGTATTTGGGAACACGTACAGGCAAGAGGTCTTCGAAAAGACGAAGGACCTGCTCTTCAATGGGACCAAAGCTGTCATGGGAAAAATCTGGAATATAGATGCAGAGAAGTGCTTAGCAATACAGCCATCGGGGTCAGGTATGAAACCTGATGTGAGCCAGACACTCCTGAGGGGACAGACACTGATTGGGCAAGATGGCAGACTACAGAGAACTACACCTGTTCAAGAATGGTCTGTGTGTATGGTTGTCTCAGGTTCAGCGTTGGCTCCAGTGGGGTGCTGTGTGTGTCAGAAGGCCCAGGGCACCAGGAGGCCGTGCTCCCAGTGTGACCGCCCAGCCTGCCCCTCCTGCATCCAGCAGTGTGCCAGCTGCTCCAGATCCTGCTGCTCTGTCTGCACCGTCATCGAtctcccctcccggaggacctgagccttaaGACCATGCTTCAGGCCTACCTGACCCTACCTGGCCTGACAACTCCTGGCTGtccctgtccccagtccacctgattgtgctgctgatccagtttctgttgttctgcctgcggctatggaaccctgacctgttcacccgACGAGCAACCTTGTCCCGGACTTGCTGTTTTGACTTTCTAtttttctctcgctcgctctctctaccaGACAAGCTGCCTCgacctctgaatgatcggctatgaaaagccaactgacatttactcctgaggtgttgacctgttgcaccctatgtaaccactgtgattatttgaccctgctggtcatctatgaacgtttgttCTTCAAGATATTCAACCTGGCCTTAATGGCCACGTACTCTTATAATCTACACCCTGCACAACCAGAAGAGGGCTggtcctctaggtttcttcctaggttcctgcctttctagggagtttttcctagccactgtgcttctacatctgcaacgcttgctctttggggttttaggctgggtatcagtataagcactttgtgacaactgctgatgtaaaaagggctttaaaaaTCTATGTGATTGAATTTGATAGGCCAGATGGAATTATCACCATATTGCTTATCAGAGACGACAGTGGTGCCACTTCTGTATAGATTGTTACCTATCTAATCCTTTGTTCACCTCAAGTGCTTTGGGGGTTCATCAGTCGAAGCACATTTGTTGGAAAATAAATCTTCAAAAACTGGCAACACATCACTGGAAGTAGGCTGTTGGGGCTGTCTCAAGTTAGGCGTGAGTCAAATATTAGCCATCCTAGTAAACACATTGCAGAGTGTACATGCCTGGCTGTCATCTGAAACATTTACTTGAATTATTCTCTGTTCATTTATTATAAGGTGGATGCCAGAGCTGGGGTTATTCTCCCTTTGCTCGCTCTGAACTCTGTAATGACATTGTGTTAATGCACTCTTTAAATGGGAATGTGCAGCTGTCAGGGTTCAACACATCCCTACATCTGTCACTCTAATGTAACTCTGAAGTTCACAGTTTTCCTCCTAAGATTGTTCCTCTCCCCCTAGCATATGTATGGGGCCCTATGAGGAGAAGAAGCCGACTGGTCAGGCTTGGACACCAACTGCAGTGGGAGCGTGTGGCTTTGTCTTTCACCCATTCTTTTGGGGACCAGCTGTGCCCGGAGTGTGAGTGCCGAGCACAGCGATGCTACTGCTATAAATATGCGTCGGTGAGTGAGTGACAGCTGTGCAGTGGACCAAGGACACACTGTCTTGGCACTCCACGGACGAGTCACTCCAAACAAGGCAACCCCAGCATGACCTGAACACCAGTGATATATATCCAACTGTCTAGCTAATTGTCATTCATGTATTCAATTTCATAATGTAAGTTATGTATCGCAGAAGCATTTGAATGAAGCCAAACCAATTCTGTGACAAAATAAAAGGAAATGTAACTGAGAAAAACATTTTACGACAATGTCTATTTTTA
>TU1863780
ctgtgttaacaaaacTCCAAACaagattcaatgccatacaacactccttccgtggcttccaactgcttttaaatgctagtaaaactaaatgcatgccctTCAACTGATTGCTGCTCGCACCCTCCCGTCTGACTAGCATCACCAAAggccatatactacccaccactgcgacctgtatgcactcgttggctggcccttgctacatattcgtcgccaaacccactggctccaggtcatctataagtctttgctaggtaaagccccgccttatctcagctcactggtcaccatagcaacacccacccgtagcacgcactccaacaggtatatttcactggtcatccccaaagccaacacctcctttggccgcctttcctttcagttctctgctgccaatgactggaatgaattgcaaaaatcactgaagctggagacttatacctccctctctaactttaagcatcagctgtcagagaagcTTACCGATcatcatctgtaaatagcacacccaactacctcatccccatattatttttatttttttggtcttttgcaccccagtatctctacttacacatcatcatctgcacatctatcactccagtgttaatgctaaattttaattattttgcctctatggcctatttattgccttacctccctaatcttaccacatttgcacacactgtacatagacttttctattgtgttattgactgtacatttgtttatcccatgtgtaactctgtgttgcttttgtcacactgctttgctttatcttggccaggtcgcagttgtaaatgagaacttgagaGCTTGAGCATGAGAgcttatctggttaaataaaggtgaaataaaataaaaagtgctCCCTATAattttcctgtctgtctctctcagtctcccctcccggaggacctgagccttaaGACCATGCTTCAGGCCTACCTGACCCTACCTGGCCTGACAACTCCTGGCTGtccctgtccccagtccacctgattgtgctgctgatccagtttctgttgttctgcctgcggctatggaaccctgacctgttcacccgACGAGCAACCTTGTCCCGGACTTGCTGTTTTGACTTTCTAtttttctctcgctcgctctctctaccaGACAAGCTGCCTCgacctctgaatgatcggctatgaaaagccaactgacatttactcctgaggtgttgacctgttgcaccctatgtaaccactgtgattatttgaccctgctggtcatctatgaacgtttgttCTTCAAGATATTCAACCTGGCCTTAATGGCCACGTACTCTTATAATCTACACCCTGCACAACCAGAAGAGGGCTggtcctctaggtttcttcctaggttcctgcctttctagggagtttttcctagccactgtgcttctacatctgcaacgcttgctctttggggttttaggctgggtatcagtataagcactttgtgacaactgctgatgtaaaaagggctttaaaaaTCTATGTGATTGAATTTGATAGGCCAGATGGAATTATCACCATATTGCTTATCAGAGACGACAGTGGTGCCACTTCTGTATAGATTGTTACCTATCTAATCCTTTGTTCACCTCAAGTGCTTTGGGGGTTCATCAGTCGAAGCACATTTGTTGGAAAATAAATCTTCAAAAACTGGCAACACATCACTGGAAGTAGGCTGTTGGGGCTGTCTCAAGTTAGGCGTGAGTCAAATATTAGCCATCCTAGTAAACACATTGCAGAGTGTACATGCCTGGCTGTCATCTGAAACATTTACTTGAATTATTCTCTGTTCATTTATTATAAGGTGGATGCCAGAGCTGGGGTTATTCTCCCTTTGCTCGCTCTGAACTCTGTAATGACATTGTGTTAATGCACTCTTTAAATGGGAATGTGCAGCTGTCAGGGTTCAACACATCCCTACATCTGTCACTCTAATGTAACTCTGAAGTTCACAGTTTTCCTCCTAAGATTGTTCCTCTCCCCCTAGCATATGTATGGGGCCCTATGAGGAGAAGAAGCCGACTGGTCAGGCTTGGACACCAACTGCAGTGGGAGCGTGTGGCTTTGTCTTTCACCCATTCTTTTGGGGACCAGCTGTGCCCGGAGTGTGAGTGCCGAGCACAGCGATGCTACTGCTATAAATATGCGTCGGTGAGTGAGTGACAGCTGTGCAGTGGACCAAGGACACACTGTCTTGGCACTCCACGGACGAGTCACTCCAAACAAGGCAACCCCAGCATGACCTGAACACCAGTGATATATATCCAACTGTCTAGCTAATTGTCATTCATGTATTCAATTTCATAATGTAAGTTATGTATCGCAGAAGCATTTGAATGAAGCCAAACCAATTCTGTGACAAAATAAAAGGAAATGTAACT

Function

symbol description
siva1 Predicted to enable CD27 receptor binding activity. Predicted to be involved in extrinsic apoptotic signaling pathway. Is expressed in male organism. Orthologous to human SIVA1 (SIVA1 apoptosis inducing factor).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574458.2 False 749 mRNA 0.46 4 45174289 45186682
XM_036954911.1 False 776 mRNA 0.45 4 45174289 45186682
XM_021574459.2 False 2098 mRNA 0.47 4 45174289 45198334
XM_036954912.1 False 2133 mRNA 0.47 4 45174289 45198342
TU1863780 True 2398 lncRNA 0.45 1 45195912 45198309

Neighbor

gene id symbol gene type direction distance location
LOC110497967 adssl2 coding upstream 204 45166900 ~ 45174085 (+)
LOC110497965 LOC100380739 coding upstream 16319 45151526 ~ 45157970 (+)
LOC110497966 LOC106582786 coding upstream 27089 45129015 ~ 45147200 (+)
LOC110497963 LOC106583053 coding upstream 106084 45064237 ~ 45068205 (+)
LOC110497964 LOC106583112 coding upstream 120737 45051160 ~ 45053552 (+)
LOC110497971 LOC106582637 coding downstream 18659 45217001 ~ 45252828 (+)
trnaa-ugc-144 NA coding downstream 44561 45242903 ~ 45242978 (+)
LOC110497972 LOC106582486 coding downstream 67756 45266098 ~ 45291658 (+)
LOC110497973 LOC106583826 coding downstream 93363 45291705 ~ 45296375 (+)
LOC110497977 LOC106582390 coding downstream 100104 45298446 ~ 45301424 (+)
G1628861 NA non-coding upstream 55634 45118452 ~ 45118655 (+)
G1628840 djc17 non-coding upstream 79959 45086882 ~ 45094330 (+)
G1628783 NA non-coding upstream 133757 44978898 ~ 45040532 (+)
G1628781 NA non-coding upstream 202985 44971092 ~ 44971304 (+)
G1628737 NA non-coding upstream 251960 44922098 ~ 44922329 (+)
G1629028 NA non-coding downstream 13551 45211893 ~ 45212120 (+)
G1629047 NA non-coding downstream 58558 45256900 ~ 45257116 (+)
G1629069 NA non-coding downstream 112534 45310876 ~ 45377620 (+)
G1629113 NA non-coding downstream 180701 45379043 ~ 45379377 (+)
G1628689 NA other upstream 287116 44886871 ~ 44887173 (+)
G1628550 NA other upstream 288055 44829922 ~ 44886234 (+)
G1628486 NA other upstream 425364 44683362 ~ 44748925 (+)
G1629134 spit1 other downstream 198489 45396831 ~ 45399822 (+)
G1629200 NA other downstream 303452 45501794 ~ 45502263 (+)
G1629210 NA other downstream 317832 45516174 ~ 45516648 (+)
G1629779 LOC106580335 other downstream 815382 46013724 ~ 46016639 (+)
G1628865 LOC105030512 other upstream 1671 45186962 ~ 45194241 (+)

Expression


Co-expression Network