LOC110497971 (LOC106582637)


Basic Information

Item Value
gene id LOC110497971
gene name LOC106582637
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45217001 ~ 45252828 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954914.1
TTATCCACCTCTGTGTGTAGCCGCCTCTCTGGATCGCAAACAGTTCAATCGGCGCTAGGACCTAGGAGATGCCACAGAAGCATTGCAGACAGAACGTTTGGGAGGTGTTGTAGAAGAAAGGCAAAAGAAACCGAGTAAATGAGAGCACTTTTTGTACAGATTATTGAAGGATTTATCAGCTAAATAAATCGCCGAAACAGCTCATTATAATGCAACGGACACACTATTGAAATCCTGTCCAGGCCCAGCCACAGCCAGAGATGACTGGAGCACAACGCACTGCTGGCCCAGCCACAGCCAGAGAGGACTGGAGCACAATGTGCTGCTGCCAGTACTCAGAGCATGTgggaccaactggcagGAAACTGGTGAAAAGGCGACTACAGGCTCCTGCCCTGGACTGAGTGAAGGACGCTTGGGGAACAGAGCTGTGTCTCTCCCTGTCAGAACCCTGGACACACTAACCTGCCCACCAACATGACCGATGTGGCGATTGTGAAGGAGGGATGGCTGCACAAAAGAGGAGAGTACATTAAGACCTGGAGGCCCAGGTATTTTCTACTCAAGAGTGATGGTACATTCATTGGCTACAAGGAACGACCACAAGATGTTGACGCGTTCGAAACCCCCTTAAATAACTTCTCAGTAGCACAGTGCCAGCTGATGAAGACGGAGAGGCCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCGAGCGCACCTTCCACGTGGAGACCCCCGAGGAGAGgGAAGAATGGACGAAAGCCATTCAGGCTGTAGCAGATGGCCTacagaaacaggaagaggagatGATGGACTCCTCCCCAGACCCAATGGACATGGAGATGTACCTGACCAAACCCAGACTCAAAGTGACTATGGACGACTTTGAATACCTCAAACTCCTCGGAAAAGGTACTTTTGGCAAAGTGATCCTGGTGAAGGAGAAGGCCACAGGACGCTACTATGCCATGAAAATCCTGAAGAAGGAAGTGATCGTAGCGAAAGATGAAgtggcacacacactcacagaaaaCCGAGTGCTCCAGAATTCCAAGCATCCGTTCTTGACAGGCCTGAAATACTCCTTCCAGACCCATGACCGGTTGTGTTTCGTAATGGAGTATGCGAACGGCGGAGAGcTGTTCTTCCACCTCTCCCGAGACCGGGTGTTCTCGGAGGAGCGGTCTCGGTTCTACGGGGCGGAGATAGTGTCAGCGCTGGACTACCTGCATGCTGAGAGGAACGTGGTCTACAGAGACCTGAAGCTGGAAAATCTCATGCTGGACAAAGACGGACACATAAAGATCACCGACTTTGGACTGTGTAAGGAGGGGATCACAGACGGGGCCACCATGAAGACCTTCTGTGGGACACCAGAGTACCTGGCCCCAGAGGTTCTGGAGGACAATGATTACGGTCGTGCGGTGGACTGGTGGGGTCTGGGCGTGGTCATGTACGAGATGATGTGCGGTCGGCTGCCCTTCTACAACCAGGACCACGAGAAGCTGTTTGAGCTCATCCTCATGGAGGACATCCGTTTCCCACGTACCCTGGGTCACGAGGGCAGGTCCCTGCTCTCCGGCCTGCTCAAGAAGGACCCCAAGCAGCGGTTAGGTGGAGGACAGGATGATGCTAAGGAGATTATGCAGCACAAATTCTTTGCTGGGATTGAATGGCAAGATGTTTATGAGAAAAAGCTGGTCCCGCCCTTCAAGCCCCAGGTTACCTCGGAAACAGATACACGGTATTTTGACGAGGAGTTCACAGCACAGACCATCACTATTACACCGCCCGGACAAGAAGACAGCATGGAGTCGTTTGACAGCGAACGGAGACCCCACTTCCCACAGTTTTCCTACTCTGCGAGTGGAACAGCCTAAACACACCCCTTTATTCCTCTGGTCCCACCATTTCCCCTCACCCCACCAGACTGCACATCCAACTACCGGGGTTTTCGCCACATCCTTTCCTTACTTCACCAGTGTTTCAGATAGTATTGTTGAACAGACATTTGCAATCTGCAGGTTCGGTAATTATATGGGAAAATACTCCATACTACACAAATGAAAAACCACTGATTAGTTTCTGTGGCCTTTTAAGACTTTTCTAATGGTGAGAGAGAACACTACAGTGCATTTCCTGCTTGTCTTGATGTGTGCAGTCAGACAAGCTTGATGTTCATAAAACCTAATTTATAGGAAAAGAGTGGTCATGCAGCGATGTGGTATATGAATTTAGAATGATAAGGCTACACGTTCTTAAACTTTTGTCTTGCTTTTGTCAGCACCTgttatatttgtcacatactaTTCACAAAGTGAACGTTTGCCTGGAAAATGTTACGGGACCATAAGGACTATATTGGAATTAGCCATTTaaaattgaaatgtattttgcTGTTCTTTGTTTAAAGGGGCGATCTGCAGttgttacatacatttttttgacTCATGAAtaaatgatatgtacccattgattcttgaagaatataacttatgaaTGCCTAATGAACTTAGTTGAACTGTCATACCCTATCACAACCCAAAATATAAGATAATTTAGCTCCAaagtttgtaaacaaacactatatagcctcacaCTATGGTTAAAATGATAATTTTGGATATGatggcatccatagctctgtctatgaattttagtggttccatttctccaacccatccctcagctttttacataAACAGGGATGGGGAGAACGctttgtttcaactgctgatttccGCTTTAATACCAATAAATATTGTGGCCCAACGGCAATAACAATAGATGACCAATGACTTCGTTTTCAATGAAGTGGGAGATTAGTCTgatattgatttttttttatcaagacTTTCACACTATCACTATTTGACCAACACTTTGAATCTCCTTGGGCTGCCAGTATACCTaatcaataaaatgtattattctgTATATCTAActgttagtagaacatggttgaTTCTTATAGGACTTCCAATGCTCAAAAAACATTCTTATCAGAATTTTAAAGCCCTAAAACATTAGAGAACAAGGTGAGAATTACCCAATGGACCACTGTCAGTCTAATAGAGAAATGATGTAATAGAGTGGCAGAAAGGGGATTTGCAGATACTTAAATAACACTTATTCTGGGGGCAGGCATAATCTAAATAGATTAAAGCTTGCTGTCAATGAATCTCAGAACTGTGTACACATGGTCAATTAGATATCCATTTCCTGTGGTCCCATTGAAAAGACAGAGTTACTCTAACCCCCCTGGACTATCATGTGCTTGGATTGTGGTGCCTCCCTGTCTGAATGTTGTATTCCAAACACTCTAGGCTGCTTCCCTCTGAACTTGCCAGTCAGGTACTGATCCTTTCTGCCCAATCAGGGAATCTTTTCTCTCTTCTGGATTTTCCTCTTCTACAGTATTGGGTGTTTTTCTCCCAGTGTACTCACTGCAGCCTCAATGAGgtcactataacaatatagtccTTTAGGACTTACTCCATAAACAAACTGGGCTGTGGTTCCGGGGGAAACAAGTTGAGTCAGCTTTGATCTCTATAGGTAGGGATGTGTTCCATTCCTCTGTACATGGCTCTGAGTTGTTATTTATAGAAAACCAGCAATGAAAATGGATTTGACTGTGCCAATGATATGCACTTTCCTGCCCCaaaacatgtatgtatgtatttgtaCACTTGTACTTGTTACACTTTGCTGTCAGAAATGactgaaacagcacctctctagACATCAATTCTGAAAGGTGTGAACTATGAAAAGATAATTTGCGCAATTAACCCCCATATACAGATTGCTGTAGATAAACTGGTAATCTTGAAAATGGAACACAGTTCTCCAATGAGTTTCCAGAAAATTCTGCTGTGTTTTCAGATGACTGATAATCACGATACAAAAGTTAATCATACAAATGAATGTAacagctttttatttttattttcatatcAATTCCTCTTTCTCAAACAATTCTTAAATTGTTAGATCTGATTGTTGCTTAATCCTATGCACACTCATCATTTGCTGTCACCCTCTGAAAATAGGGAAATGTATTTTATACCTTttctttttaaaactttttttgtaCCTCCTCTTTCCTATTCCCAAGACTGAGGACACCAgctttagtaaataaatgatatCCACTTTGTACACTGTTTTTACTGTTTTGTTTTTTCttttaaattgattaaataaaaggtCTTAACTAAACCTGC
>XM_036954913.1
ATCCACCTCTGTGTGTAGCCGCCTCTCTGGATCGCAAACAGTTCAATCGGCGCTAGGACCTAGGAGATGCCACAGAAGCATTGCAGACAGAACGTTTGGGAGGTGTTGTAGAAGAAAGGCAAAAGAAACCGAGTAAATGAGAGCACTTTTTGTACAGATTATTGAAGGATTTATCAGCTAAATAAATCGCCGAAACAGCTCATTATAATGCAACGGACACACTATTGAAATCCTGTCCAGGAAACTGGTGAAAAGGCGACTACAGGCTCCTGCCCTGGACTGAGTGAAGGACGCTTGGGGAACAGAGCTGTGTCTCTCCCTGTCAGAACCCTGGACACACTAACCTGCCCACCAACATGACCGATGTGGCGATTGTGAAGGAGGGATGGCTGCACAAAAGAGGAGAGTACATTAAGACCTGGAGGCCCAGGTATTTTCTACTCAAGAGTGATGGTACATTCATTGGCTACAAGGAACGACCACAAGATGTTGACGCGTTCGAAACCCCCTTAAATAACTTCTCAGTAGCACAGTGCCAGCTGATGAAGACGGAGAGGCCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCGAGCGCACCTTCCACGTGGAGACCCCCGAGGAGAGgGAAGAATGGACGAAAGCCATTCAGGCTGTAGCAGATGGCCTacagaaacaggaagaggagatGATGGACTCCTCCCCAGACCCAATGGACATGGAGATGTACCTGACCAAACCCAGACTCAAAGTGACTATGGACGACTTTGAATACCTCAAACTCCTCGGAAAAGGTACTTTTGGCAAAGTGATCCTGGTGAAGGAGAAGGCCACAGGACGCTACTATGCCATGAAAATCCTGAAGAAGGAAGTGATCGTAGCGAAAGATGAAgtggcacacacactcacagaaaaCCGAGTGCTCCAGAATTCCAAGCATCCGTTCTTGACAGGCCTGAAATACTCCTTCCAGACCCATGACCGGTTGTGTTTCGTAATGGAGTATGCGAACGGCGGAGAGcTGTTCTTCCACCTCTCCCGAGACCGGGTGTTCTCGGAGGAGCGGTCTCGGTTCTACGGGGCGGAGATAGTGTCAGCGCTGGACTACCTGCATGCTGAGAGGAACGTGGTCTACAGAGACCTGAAGCTGGAAAATCTCATGCTGGACAAAGACGGACACATAAAGATCACCGACTTTGGACTGTGTAAGGAGGGGATCACAGACGGGGCCACCATGAAGACCTTCTGTGGGACACCAGAGTACCTGGCCCCAGAGGTTCTGGAGGACAATGATTACGGTCGTGCGGTGGACTGGTGGGGTCTGGGCGTGGTCATGTACGAGATGATGTGCGGTCGGCTGCCCTTCTACAACCAGGACCACGAGAAGCTGTTTGAGCTCATCCTCATGGAGGACATCCGTTTCCCACGTACCCTGGGTCACGAGGGCAGGTCCCTGCTCTCCGGCCTGCTCAAGAAGGACCCCAAGCAGCGGTTAGGTGGAGGACAGGATGATGCTAAGGAGATTATGCAGCACAAATTCTTTGCTGGGATTGAATGGCAAGATGTTTATGAGAAAAAGCTGGTCCCGCCCTTCAAGCCCCAGGTTACCTCGGAAACAGATACACGGTATTTTGACGAGGAGTTCACAGCACAGACCATCACTATTACACCGCCCGGACAAGAAGACAGCATGGAGTCGTTTGACAGCGAACGGAGACCCCACTTCCCACAGTTTTCCTACTCTGCGAGTGGAACAGCCTAAACACACCCCTTTATTCCTCTGGTCCCACCATTTCCCCTCACCCCACCAGACTGCACATCCAACTACCGGGGTTTTCGCCACATCCTTTCCTTACTTCACCAGTGTTTCAGATAGTATTGTTGAACAGACATTTGCAATCTGCAGGTTCGGTAATTATATGGGAAAATACTCCATACTACACAAATGAAAAACCACTGATTAGTTTCTGTGGCCTTTTAAGACTTTTCTAATGGTGAGAGAGAACACTACAGTGCATTTCCTGCTTGTCTTGATGTGTGCAGTCAGACAAGCTTGATGTTCATAAAACCTAATTTATAGGAAAAGAGTGGTCATGCAGCGATGTGGTATATGAATTTAGAATGATAAGGCTACACGTTCTTAAACTTTTGTCTTGCTTTTGTCAGCACCTgttatatttgtcacatactaTTCACAAAGTGAACGTTTGCCTGGAAAATGTTACGGGACCATAAGGACTATATTGGAATTAGCCATTTaaaattgaaatgtattttgcTGTTCTTTGTTTAAAGGGGCGATCTGCAGttgttacatacatttttttgacTCATGAAtaaatgatatgtacccattgattcttgaagaatataacttatgaaTGCCTAATGAACTTAGTTGAACTGTCATACCCTATCACAACCCAAAATATAAGATAATTTAGCTCCAaagtttgtaaacaaacactatatagcctcacaCTATGGTTAAAATGATAATTTTGGATATGatggcatccatagctctgtctatgaattttagtggttccatttctccaacccatccctcagctttttacataAACAGGGATGGGGAGAACGctttgtttcaactgctgatttccGCTTTAATACCAATAAATATTGTGGCCCAACGGCAATAACAATAGATGACCAATGACTTCGTTTTCAATGAAGTGGGAGATTAGTCTgatattgatttttttttatcaagacTTTCACACTATCACTATTTGACCAACACTTTGAATCTCCTTGGGCTGCCAGTATACCTaatcaataaaatgtattattctgTATATCTAActgttagtagaacatggttgaTTCTTATAGGACTTCCAATGCTCAAAAAACATTCTTATCAGAATTTTAAAGCCCTAAAACATTAGAGAACAAGGTGAGAATTACCCAATGGACCACTGTCAGTCTAATAGAGAAATGATGTAATAGAGTGGCAGAAAGGGGATTTGCAGATACTTAAATAACACTTATTCTGGGGGCAGGCATAATCTAAATAGATTAAAGCTTGCTGTCAATGAATCTCAGAACTGTGTACACATGGTCAATTAGATATCCATTTCCTGTGGTCCCATTGAAAAGACAGAGTTACTCTAACCCCCCTGGACTATCATGTGCTTGGATTGTGGTGCCTCCCTGTCTGAATGTTGTATTCCAAACACTCTAGGCTGCTTCCCTCTGAACTTGCCAGTCAGGTACTGATCCTTTCTGCCCAATCAGGGAATCTTTTCTCTCTTCTGGATTTTCCTCTTCTACAGTATTGGGTGTTTTTCTCCCAGTGTACTCACTGCAGCCTCAATGAGgtcactataacaatatagtccTTTAGGACTTACTCCATAAACAAACTGGGCTGTGGTTCCGGGGGAAACAAGTTGAGTCAGCTTTGATCTCTATAGGTAGGGATGTGTTCCATTCCTCTGTACATGGCTCTGAGTTGTTATTTATAGAAAACCAGCAATGAAAATGGATTTGACTGTGCCAATGATATGCACTTTCCTGCCCCaaaacatgtatgtatgtatttgtaCACTTGTACTTGTTACACTTTGCTGTCAGAAATGactgaaacagcacctctctagACATCAATTCTGAAAGGTGTGAACTATGAAAAGATAATTTGCGCAATTAACCCCCATATACAGATTGCTGTAGATAAACTGGTAATCTTGAAAATGGAACACAGTTCTCCAATGAGTTTCCAGAAAATTCTGCTGTGTTTTCAGATGACTGATAATCACGATACAAAAGTTAATCATACAAATGAATGTAacagctttttatttttattttcatatcAATTCCTCTTTCTCAAACAATTCTTAAATTGTTAGATCTGATTGTTGCTTAATCCTATGCACACTCATCATTTGCTGTCACCCTCTGAAAATAGGGAAATGTATTTTATACCTTttctttttaaaactttttttgtaCCTCCTCTTTCCTATTCCCAAGACTGAGGACACCAgctttagtaaataaatgatatCCACTTTGTACACTGTTTTTACTGTTTTGTTTTTTCttttaaattgattaaataaaaggtCTTAACTAAACCTGC
>TU1863967
GTTTGGGAGGTGTTGTAGAAGAAAGGCAAAAGAAACCGAGTAAATGAGAGCACTTTTTGTACAGATTATTGAAGGATTTATCAGCTAAATAAATCGCCGAAACAGCTCATTATAATGCAACGGACACACTATTGAAATCCTGTCCAGgtaactctggggcttcctttcctgtgacggtcctcatgagagccagtttcatcatagagcttgttggtttttgtgactgcacttgaagaaacttggaaatttcttgaaattttccagattgactgaccttcatgtcttaaagtaacgatggactgtcgtttctctttgcttatttgagctgttcttgccataaaatggacttggtcttttaccaaataggtctttCTTCTGTATacaccccctaccttgtcacaatacaactgattggc

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954914.1 False 4248 mRNA 0.44 15 45217001 45252828
XM_036954913.1 False 4127 mRNA 0.43 14 45217003 45252828
TU1863967 True 416 lncRNA 0.40 2 45217096 45220307

Neighbor

gene id symbol gene type direction distance location
LOC110497969 siva1 coding upstream 18659 45174289 ~ 45198342 (+)
LOC110497967 adssl2 coding upstream 42916 45166900 ~ 45174085 (+)
LOC110497965 LOC100380739 coding upstream 59031 45151526 ~ 45157970 (+)
LOC110497966 LOC106582786 coding upstream 69801 45129015 ~ 45147200 (+)
LOC110497963 LOC106583053 coding upstream 148796 45064237 ~ 45068205 (+)
LOC110497972 LOC106582486 coding downstream 13270 45266098 ~ 45291658 (+)
LOC110497973 LOC106583826 coding downstream 38877 45291705 ~ 45296375 (+)
LOC110497977 LOC106582390 coding downstream 45618 45298446 ~ 45301424 (+)
zgc:162989 pp14b coding downstream 151808 45404636 ~ 45421914 (+)
bub1bb LOC106582108 coding downstream 174247 45427075 ~ 45430207 (+)
G1629028 NA non-coding upstream 4881 45211893 ~ 45212120 (+)
G1628861 NA non-coding upstream 98346 45118452 ~ 45118655 (+)
G1628840 djc17 non-coding upstream 122671 45086882 ~ 45094330 (+)
G1628783 NA non-coding upstream 176469 44978898 ~ 45040532 (+)
G1629047 NA non-coding downstream 4072 45256900 ~ 45257116 (+)
G1629069 NA non-coding downstream 58048 45310876 ~ 45377620 (+)
G1629113 NA non-coding downstream 126215 45379043 ~ 45379377 (+)
G1629115 NA non-coding downstream 127533 45380361 ~ 45380579 (+)
G1629117 NA non-coding downstream 128482 45381310 ~ 45381540 (+)
G1628865 LOC105030512 other upstream 22760 45186962 ~ 45194241 (+)
LOC110497964 LOC106583112 other upstream 163450 45051160 ~ 45053552 (+)
G1628689 NA other upstream 329828 44886871 ~ 44887173 (+)
G1628550 NA other upstream 330767 44829922 ~ 44886234 (+)
G1628486 NA other upstream 468076 44683362 ~ 44748925 (+)
G1629134 spit1 other downstream 144003 45396831 ~ 45399822 (+)
G1629200 NA other downstream 248966 45501794 ~ 45502263 (+)
G1629210 NA other downstream 263346 45516174 ~ 45516648 (+)
G1629779 LOC106580335 other downstream 760896 46013724 ~ 46016639 (+)
trnaa-ugc-144 NA coding downstream 22596 45242903 ~ 45242978 (+)
G1628488 NA other upstream 469650 44688382 ~ 44747446 (+)

Expression


Co-expression Network